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Novel Contributions to the Peritrich Family Vaginicolidae
applyparastyle “fig//caption/p[1]” parastyle “FigCapt” Zoological Journal of the Linnean Society, 2019, 187, 1–30. With 13 figures. Novel contributions to the peritrich family Vaginicolidae (Protista: Ciliophora), with morphological and Downloaded from https://academic.oup.com/zoolinnean/article-abstract/187/1/1/5434147/ by Ocean University of China user on 08 October 2019 phylogenetic analyses of poorly known species of Pyxicola, Cothurnia and Vaginicola BORONG LU1, LIFANG LI2, XIAOZHONG HU1,5,*, DAODE JI3,*, KHALED A. S. AL-RASHEID4 and WEIBO SONG1,5 1Institute of Evolution and Marine Biodiversity, & Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China 2Marine College, Shandong University, Weihai 264209, China 3School of Ocean, Yantai University, Yantai 264005, China 4Zoology Department, College of Science, King Saud University, Riyadh 11451, Saudi Arabia 5Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China Received 29 September 2018; revised 26 December 2018; accepted for publication 13 February 2019 The classification of loricate peritrich ciliates is difficult because of an accumulation of several taxonomic problems. In the present work, three poorly described vaginicolids, Pyxicola pusilla, Cothurnia ceramicola and Vaginicola tincta, were isolated from the surface of two freshwater/marine algae in China. In our study, the ciliature of Pyxicola and Vaginicola is revealed for the first time, demonstrating the taxonomic value of infundibular polykineties. The small subunit rDNA, ITS1-5.8S rDNA-ITS2 region and large subunit rDNA of the above species were sequenced for the first time. Phylogenetic analyses based on these genes indicated that Pyxicola and Cothurnia are closely related. -
Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers Micah Dunthorn University of Massachusetts Amherst, [email protected]
University of Massachusetts Amherst ScholarWorks@UMass Amherst Open Access Dissertations 9-2009 Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers Micah Dunthorn University of Massachusetts Amherst, [email protected] Follow this and additional works at: https://scholarworks.umass.edu/open_access_dissertations Part of the Life Sciences Commons Recommended Citation Dunthorn, Micah, "Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers" (2009). Open Access Dissertations. 95. https://doi.org/10.7275/fyvd-rr19 https://scholarworks.umass.edu/open_access_dissertations/95 This Open Access Dissertation is brought to you for free and open access by ScholarWorks@UMass Amherst. It has been accepted for inclusion in Open Access Dissertations by an authorized administrator of ScholarWorks@UMass Amherst. For more information, please contact [email protected]. CILIATE BIODIVERSITY AND PHYLOGENETIC RECONSTRUCTION ASSESSED BY MULTIPLE MOLECULAR MARKERS A Dissertation Presented by MICAH DUNTHORN Submitted to the Graduate School of the University of Massachusetts Amherst in partial fulfillment of the requirements for the degree of Doctor of Philosophy September 2009 Organismic and Evolutionary Biology © Copyright by Micah Dunthorn 2009 All Rights Reserved CILIATE BIODIVERSITY AND PHYLOGENETIC RECONSTRUCTION ASSESSED BY MULTIPLE MOLECULAR MARKERS A Dissertation Presented By MICAH DUNTHORN Approved as to style and content by: _______________________________________ -
Zoothamnium Ignavum Sp
RESEARCH ARTICLE A Novel Colonial Ciliate Zoothamnium ignavum sp. nov. (Ciliophora, Oligohymeno- phorea) and Its Ectosymbiont Candidatus Navis piranensis gen. nov., sp. nov. from Shallow-Water Wood Falls Lukas Schuster*, Monika Bright University of Vienna, Departmentof Limnology and Bio-Oceanography, Althanstraße 14, A-1090 Vienna, Austria * [email protected] a11111 Abstract Symbioses between ciliate hosts and prokaryote or unicellular eukaryote symbionts are widespread. Here, we report on a novel ciliate species within the genus Zoothamnium Bory de St. Vincent, 1824, isolated from shallow-water sunken wood in the North Adriatic Sea OPEN ACCESS (Mediterranean Sea), proposed as Zoothamnium ignavum sp. nov. We found this ciliate Citation: Schuster L, Bright M (2016) A Novel species to be associated with a novel genus of bacteria, here proposed as “Candidatus Colonial Ciliate Zoothamnium ignavum sp. nov. Navis piranensis” gen. nov., sp. nov. The descriptions of host and symbiont species are (Ciliophora, Oligohymeno-phorea) and Its based on morphological and ultrastructural studies, the SSU rRNA sequences, and in situ Ectosymbiont Candidatus Navis piranensis gen. nov., sp. nov. from Shallow-Water Wood Falls. PLoS ONE hybridization with symbiont-specific probes. The host is characterized by alternate micro- 11(9): e0162834. doi:10.1371/journal.pone.0162834 zooids on alternate branches arising from a long, common stalk with an adhesive disc. Editor: Jonathan H. Badger, National Cancer Three different types of zooids are present: microzooids with a bulgy oral side, roundish to Institute,UNITED STATES ellipsoid macrozooids, and terminal zooids ellipsoid when dividing or bulgy when undividing. Received: June 9, 2016 The oral ciliature of the microzooids runs 1¼ turns in a clockwise direction around the peri- stomial disc when viewed from inside the cell and runs into the infundibulum, where it Accepted: August 29, 2016 makes another ¾ turn. -
Lobban & Schefter 2008
Micronesica 40(1/2): 253–273, 2008 Freshwater biodiversity of Guam. 1. Introduction, with new records of ciliates and a heliozoan CHRISTOPHER S. LOBBAN and MARÍA SCHEFTER Division of Natural Sciences, College of Natural & Applied Sciences, University of Guam, Mangilao, GU 96923 Abstract—Inland waters are the most endangered ecosystems in the world because of complex threats and management problems, yet the freshwater microbial eukaryotes and microinvertebrates are generally not well known and from Guam are virtually unknown. Photo- documentation can provide useful information on such organisms. In this paper we document protists from mostly lentic inland waters of Guam and report twelve freshwater ciliates, especially peritrichs, which are the first records of ciliates from Guam or Micronesia. We also report a species of Raphidiophrys (Heliozoa). Undergraduate students can meaningfully contribute to knowledge of regional biodiversity through individual or class projects using photodocumentation. Introduction Biodiversity has become an important field of study since it was first recognized as a concept some 20 years ago. It includes the totality of heritable variation at all levels, including numbers of species, in an ecosystem or the world (Wilson 1997). Biodiversity encompasses our recognition of the “ecosystem services” provided by organisms, the interconnectedness of species, and the impact of human activities, including global warming, on ecosystems and biodiversity (Reaka-Kudla et al. 1997). Current interest in biodiversity has prompted global bioinformatics efforts to identify species through DNA “barcodes” (Hebert et al. 2002) and to make databases accessible through the Internet (Ratnasingham & Hebert 2007, Encyclopedia of Life 2008). Biodiversity patterns are often contrasted between terrestrial ecosystems, with high endemism, and marine ecosystems, with low endemism except in the most remote archipelagoes (e.g., Hawai‘i), but patterns in Oceania suggest that this contrast may not be so clear as it seemed (Paulay & Meyer 2002). -
Classification of the Phylum Ciliophora (Eukaryota, Alveolata)
1! The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised 2! Classification of the Phylum Ciliophora (Eukaryota, Alveolata) 3! 4! Feng Gao a, Alan Warren b, Qianqian Zhang c, Jun Gong c, Miao Miao d, Ping Sun e, 5! Dapeng Xu f, Jie Huang g, Zhenzhen Yi h,* & Weibo Song a,* 6! 7! a Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao, 8! China; b Department of Life Sciences, Natural History Museum, London, UK; c Yantai 9! Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China; d 10! College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China; 11! e Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystem, 12! Xiamen University, Xiamen, China; f State Key Laboratory of Marine Environmental 13! Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, 14! China; g Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China; h 15! School of Life Science, South China Normal University, Guangzhou, China. 16! 17! Running Head: Phylogeny and evolution of Ciliophora 18! *!Address correspondence to Zhenzhen Yi, [email protected]; or Weibo Song, 19! [email protected] 20! ! ! 1! Table S1. List of species for which SSU rDNA, 5.8S rDNA, LSU rDNA, and alpha-tubulin were newly sequenced in the present work. ! ITS1-5.8S- Class Subclass Order Family Speicies Sample sites SSU rDNA LSU rDNA a-tubulin ITS2 A freshwater pond within the campus of 1 COLPODEA Colpodida Colpodidae Colpoda inflata the South China Normal University, KM222106 KM222071 KM222160 Guangzhou (23° 09′N, 113° 22′ E) Climacostomum No. -
New Record of Epistylis Hentscheli (Ciliophora, Peritrichia)
A peer-reviewed open-access journal ZooKeys 782: 1–9 (2018) New record of Epistylis hentscheli (Ciliophora, Peritrichia)... 1 doi: 10.3897/zookeys.782.26417 SHORT COMMUNICATION http://zookeys.pensoft.net Launched to accelerate biodiversity research New record of Epistylis hentscheli (Ciliophora, Peritrichia) as an epibiont of Procambarus (Austrocambarus) sp. (Crustacea, Decapoda) in Chiapas, Mexico Mireya Ramírez-Ballesteros1,2, Gregorio Fernandez-Leborans3, Rosaura Mayén-Estrada1 1 Laboratorio de Protozoología, Departamento de Biología Comparada, Facultad de Ciencias, Universidad Nacional Autónoma de México, Av. Universidad 3000, Circuito Exterior S/N. Coyoacán, 04510. Ciudad de México, México 2 Posgrado en Ciencias Biológicas, Facultad de Ciencias, Universidad Nacional Autónoma de México 3 Departamento de Zoología, Facultad de Biología, Universidad Complutense, Calle José Antonio Novais 12, 28040. Madrid, España Corresponding author: Mireya Ramírez-Ballesteros ([email protected]) Academic editor: I. Wehrtmann | Received 4 May 2018 | Accepted 24 July 2018 | Published 16 August 2018 http://zoobank.org/59385B28-A81E-4C90-B3B7-5BADC513CA55 Citation: Ramírez-Ballesteros M, Fernandez-Leborans G, Mayén-Estrada R (2018) New record of Epistylis hentscheli (Ciliophora, Peritrichia) as an epibiont of Procambarus (Austrocambarus) sp. (Crustacea, Decapoda) in Chiapas, Mexico. ZooKeys 782: 1–9. https://doi.org/10.3897/zookeys.782.26417 Abstract Epibiosis is very common between crustaceans and ciliates where the calcified surface of the crustacean body provides a suitable substrate for ciliate colonization. The aim of this contribution is to provide data about a new record between the epistylid ciliate Epistylis hentscheli Kahl, 1935, and the crayfish Procambarus (Austrocambarus) sp. The distribution of the epistylid on the basibiont body and its cellular/ colonial characteristics were analyzed. -
New Discoveries of the Genus Thuricola Kent, 1881 (Ciliophora, Peritrichia, Vaginicolidae), with Descriptions of Three Poorly Known Species from China
Acta Protozool. (2018) 57: 123–143 www.ejournals.eu/Acta-Protozoologica ACTA doi:10.4467/16890027AP.18.011.8985 PROTOZOOLOGICA New discoveries of the genus Thuricola Kent, 1881 (Ciliophora, Peritrichia, Vaginicolidae), with descriptions of three poorly known species from China Borong LU1, Daode JI2, Yalan SHENG1, Weibo SONG1, Xiaozhong HU1,5, Xiangrui CHEN3, Khaled A. S. AL-RASHEID4, 1 Institute of Evolution and Marine Biodiversity & Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, China; 2 School of Ocean, Yantai University, Yantai, China; 3 School of Marine Sciences, Ningbo University, Ningbo, China; 4 Zoology Department, King Saud University, Riyadh, Saudi Arabia; 5 Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China Abstract. Members of the genus Thuricola are a highly specialized group of peritrichous ciliates possessing a protective barrel-shaped lorica. The genus presents many difficulties in terms of species separation and definition, and in this context the present study investigates three species by protargol staining and analyses of SSU rDNA sequences. Based on their morphologic characteristics and biotope, they were identified as three poorly known forms in Thuricola, namely T. obconica Kahl, 1933, T. kellicottiana (Stokes, 1887) Kahl 1935 and T. folliculata Kent, 1881, respectively. T. obconica is characterized by possessing curved lorica and a single valve in vivo. T. kellicottiana is distinguished by two valves with a spine on the main valve, and a generally long internal stalk upon which the zooids sit. T. folliculata also has two valves but lacks a spine. The ciliature of the three species are basically similar. -
Protozoologica
Acta Protozool. (2009) 48: 291–319 ActA Protozoologica Morphological and Molecular Characterization of Some Peritrichs (Ciliophora: Peritrichida) from Tank Bromeliads, Including Two New Genera: Orborhabdostyla and Vorticellides Wilhelm FOISSNER1, Natalie BLAKE1, Klaus WOLF2, Hans-Werner BREINER3 and Thorsten STOECK3 1 Universität Salzburg, FB Organismische Biologie, Salzburg, Austria; 2 University of the West Indies, Electron Microscopy Unit, Kingston 7, Jamaica; 3 Universität Kaiserslautern, FB Biologie, Kaiserslautern, Germany Summary. Using standard methods, we studied the morphology and 18S rDNA sequence of some peritrich ciliates from tank bromeliads of Costa Rica, Jamaica, and Ecuador. The new genus Orborhabdostyla differs from Rhabdostyla by the discoidal macronucleus. Two species from the literature and a new species from Ecuadoran tank bromeliads are combined with the new genus: O. previpes (Claparède and Lach- mann, 1857) nov. comb., O. kahli (Nenninger, 1948) nov. comb., and O. bromelicola nov. spec. Orborhabdostyla bromelicola is a slender species with stalk-like narrowed posterior half and operculariid/epistylidid oral apparatus. An epistylidid relationship is also suggested by the gene sequence. Vorticella gracilis, described by Dujardin (1841) from French freshwater, belongs to the V. convallaria complex but differs by the yellowish colour and the number of silverlines. The classification as a distinct species is supported by the 18S rDNA, which differs nearly 10% from that of V. convallaria s. str. Based on the new data, especially the very stable yellowish colour, we neotypify V. gracilis with the Austrian population studied by Foissner (1979). Vorticella gracilis forms a strongly supported phyloclade together with V. campanula, V. fusca and V. convallaria, while Vorticellides astyliformis and Vorticella microstoma branch in a separate, fully-supported clade that includes Astylozoon and Opisthonecta. -
Morphology of Four New Solitary Sessile Peritrich Ciliates from the Yellow Sea, China, with Description of an Unidentified Speci
Available online at www.sciencedirect.com ScienceDirect European Journal of Protistology 57 (2017) 73–84 Morphology of four new solitary sessile peritrich ciliates from the Yellow Sea, China, with description of an unidentified species of Paravorticella (Ciliophora, Peritrichia) a,b c d b,∗ Ping Sun , Saleh A. Al-Farraj , Alan Warren , Honggang Ma a Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystem, Xiamen University, Xiamen 361005, China b Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China c Zoology Department, College of Science, King Saud University, Riyadh 11451, Saudi Arabia d Department of Life Sciences, Natural History Museum, London SW7 5BD, UK Received 23 June 2016; received in revised form 7 November 2016; accepted 7 November 2016 Available online 14 November 2016 Abstract Sessile peritrichs are a large assemblage of ciliates that have a wide distribution in soil, freshwater and marine waters. Here, we document four new and one unidentified species of solitary sessile peritrichs from aquaculture ponds and coastal waters of the northern Yellow Sea, China. Based on their living morphology, infraciliature and silverline system, four of the five forms were identified as new members belonging to one of three genera, Vorticella, Pseudovorticella and Scyphidia, representing two families, Vorticellidae and Scyphidiidae. The other isolate was found to be an unidentified species of the poorly known genus Paravorticella. Vorticella chiangi sp. nov. is characterized by its inverted bell-shaped zooid, short row 3 in infundibular polykinety 3 and marine habitat. Pseudovorticella liangae sp. nov. posseses a thin, broad peristomial lip and a granular pellicle. -
Cell Proliferation and Growth in Zoothamnium Niveum (Oligohymenophora, Peritrichida) – Thiotrophic Bacteria Symbiosis
SYMBIOSIS (2009) 47, 43–50 ©2009 Balaban, Philadelphia/Rehovot ISSN 0334-5114 Cell proliferation and growth in Zoothamnium niveum (Oligohymenophora, Peritrichida) – thiotrophic bacteria symbiosis Ulrike Kloiber1*, Bettina Pflugfelder1, Christian Rinke1,2, and Monika Bright1 1Department of Marine Biology, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria, Tel. +43-14277-54331, Fax. +43-14277-54339, Emails. [email protected], [email protected] and [email protected]; 2Current address: School of Biological Sciences, Washington State University, Pullmann, WA 99164, USA, Email. [email protected] (Received March 31, 2008; Accepted July 4, 2008) Abstract Chemolithoautotrophic, sulphide-oxidizing (thiotrophic) symbioses represent spectacular adaptations to fluctuating environmental gradients and survival is often accomplished when growth is fuelled by sufficient nourishment through the symbionts leading to fast cell proliferation. Here we show 5’-bromo-2’deoxyuridine (BrdU) pulse labelling of vegetative growing Zoothamnium niveum, a colonial ciliate obligately associated with thiotrophic ectosymbionts, and demonstrate age related growth profiles in three heteromorphic host cell types. At the colony’s apex, a large top terminal zooid performed high proliferation activity, which decreased significantly with increasing colony age but was still present in old colonies indicating that this cell possesses lifelong cell division potential. In contrast, terminal branch zooids proliferated independent of colony age but appeared to be limited by their cell division capacity predetermined by branch size, thus leading to the strict, feather-shaped colony form. Appearance of labelled terminal branch zooids allowed us to distinguish a highly proliferating apical colony region from an almost inactive, senescent basal region. In macrozooids attached to the colony, extensive BrdU labelling suggests that DNA synthesis occurs in preparation for a new generation. -
Ciliophora: Peritrichia) from Coastal Waters of Southern China
Title Morphology and Phylogeny of Four New Vorticella Species (Ciliophora: Peritrichia) from Coastal Waters of Southern China Authors Liang, Z; Shen, Z; Zhang, Y; Ji, D; Li, J; Warren, A; Lin, X Date Submitted 2018-07-26 MISS ZHUO SHEN (Orcid ID : 0000-0002-6839-0418) DR. DAODE JI (Orcid ID : 0000-0002-4878-9640) DR. XIAOFENG LIN (Orcid ID : 0000-0001-7886-7198) Article type : Original Article LIANG ET AL. – Morphology and Phylogeny of Vorticella Species Morphology and Phylogeny of Four New Vorticella Species (Ciliophora: Peritrichia) from Coastal Waters of Southern China Ziyao Lianga,#, Zhuo Shena, b, #, Yong Zhanga, Daode Jic, Jiqiu Lia, Alan Warrend, Xiaofeng Lina,* Article a Laboratory of Protozoology, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Science, South China Normal University, Guangzhou 510631, China b Microbial Ecology and Matter Cycle Group, School of Marine Sciences, Sun Yat-sen University, Zhuhai, 519082, China c School of Ocean, Yantai University, Yantai 264005, China d Department of Life Sciences, Natural History Museum, Cromwell Rd., London SW7 5BD, UK. # These authors contributed equally to this work. * Correspondence X. Lin, Laboratory of Protozoa, South China Normal University, Guangzhou 510631, China E-mail: [email protected]; Telphone/Fax: +86-20-8521 0644 ABSTRACT Four new species of Vorticella, V. parachiangi sp. n., V. scapiformis sp. n., V. sphaeroidalis sp. n., and V. paralima sp. n., were isolated from coastal brackish waters of southern China. Their morphology, infraciliature, and silverline system were investigated based on observations of specimens both in vivo and following silver staining. Vorticella parachiangi sp. -
Research Article
Ecologica Montenegrina 10: 51-57 (2017) This journal is available online at: www.biotaxa.org/em First records of epibiont ciliates (Ciliophora) in methane enriched sediments with species redescriptions ЕKATERINA IVANOVA1, IGOR V. DOVGAL1 & ALICE NEWTON2 1 Kovalevsky Institute of Marine Biological Research of Russian Academy of Sciences, 2, Nakhimov ave., Sevastopol 299011, Russia. E-mails: [email protected]; [email protected] 2 University of Algarve, Gambelas Campus, Faro 8005-139, Portugal Corresponding author: Igor V. Dovgal. E-mail: [email protected] Received: 27 February 2017 │ Accepted by V. Pešić: 5 April 2017 │ Published online: 7 April 2017. Abstract The article is dedicated to re-discovery of ciliates Loricophrya bosporica (Suctorea) and Cothurnia sp. (Peritrichia) found at nematodes from methane seep of the Ria Formosa lagoon (Southern Portugal). Based on authors’ data the lagoon sediments might be attributing to the hypoxic (periodically anoxic) methane seepage environment. The morphological characterizations of found ciliates with emphasis on poorly studied stylotheca structure in suctorian ciliate and macronucleus morphology in peritrich are presented. Key words: ciliate, epibiont, commensal, nematode, host, methane seep, Ria Formosa lagoon. Introduction Methane seeps referred to chemosynthetic extreme ecological communities, the main producers in which are methane bacteria and archaea (Pasulka et al., 2017). However, unicellular eukaryotes (protists) of methane seeps are still poorly understood components. The first finds of protists, especially ciliates in chemosynthetic communities have been in the hydrothermal vents (Van Dover et al., 1988), where, in particular, the abundant colonies of ciliates (so-called blue mats) from family Folliculinidae Dons, 1914 (Folliculinopsis sp.), attached to inanimate substrates were observed (Kories et al., 2010).