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Université D'orléans Universidade de Lisboa Faculdade de Ciências Departamento de Química e Bioquímica Université d’Orléans Institut de Chimie Organique et Analytique Carbohydrate-based 1,3-oxazoline-2-thiones as original bioactive structures. Synthesis and reactivity. Sandrina Isabel Ribeiro Martins da Silva Supervised by: Amélia Pilar Rauter (Professora Associada com Agregação do Departamento de Química e Bioquímica da Faculdade de Ciências da Universidade de Lisboa) Patrick Rollin (Professeur Classe Exceptionnelle 1 de l’Université d’Orléans) Jorge Guerra Justino (Professor Coordenador com Agregação da Escola Superior Agrária do Instituto Politécnico de Santarém) Doutoramento em Química (Química Orgânica) 2008 II Wonder is the beginning of all science Aristotle III IV Acknowledgements First of all, I would like to express my deep sense of gratitude to my supervisors, Prof. Amélia Pilar Rauter and Prof. Patrick Rollin, for the opportunity they gave me to develop this interesting subject of research. Their excellent guidance, inspiration, encouragement and support were crucial for the success of this project. I want to express my grateful thanks to Prof. Jorge Justino for his high implication and fruitful discussions about antimicrobial activity. The motivation he gave me during this project was also very important to me. I also would like to thank to Fundação para a Ciência e Tecnologia for the PhD grant SFRH/BD/16937/2004. In a special way, I want to thank Dr. Arnaud Tatibouët, for his availability, good advices, patience, sympathy and constant support during this project. All over these years and each day, many persons shared with me the laboratory and life, being decisive for the development of this project in a good environment. Among them, I want to thank particularly Abdel, AnaCat, Charlotte, Deimas, Sarona, Balla, Laury, Claudita, Yoyo, Sebastien, Ilona, Julie, Vanessa, Anthony, Andreia, Filipa, Elise, Mathilde, Monika, Alexis, Eddy, Nicholas Leconte, Stephane, petit et grand Mathiew, Jamal, Ahmed, Catherine, Nicholas Weisse, Aude, Virginie, Rajaâ, Aziz, Laurent, Ugo, Aurelien, Florent, Damien, Pamela, Aurélie, Mathéo, Fred, Joana, Zack, Fabienne, Jerôme, Mimi, Helène, Veronique, Christelle Pillard, Christelle Lopin, Franck, Sylvan, Marie Madeleine, Jean-Marie, Jean-Yves Coadou, Nathalie, Susana, Nuno, Ana Vicente, Filipa, João, Caio, Ana N., Ana C. and Bernard. I want to express my grateful thanks to Prof. Carmen Ortiz Mellet, for the availability to test my compounds against glycosidase inhibitors and for helpful discussions. I also want to thank Filipa Vinagre for the tests of antimicrobial activity. My dear friends, Rita, Susana, Mauro, Eliana, Nuno, Carlos e André, I want to thank them very much for their support during this PhD. Also, and in a special way, I want to thank Rui for all love and comprehension he demonstrated during these years, especially when I was in France. At last, but not least, I could not finish without thanking my parents Fátima e Jorge and my sister Fátima. Quero agradecer-vos do fundo do coração todo o apoio incondicional que me têm dado desde que comecei esta etapa da minha vida e todos os sacrifícios que têm feito ao longo dos meus estudos. A vossa presença e motivação constantes são a base da força que sinto cada dia, para enfrentar algumas dificuldades e lutar pelos meus objectivos. São a melhor família do mundo e sou muito feliz por pertencer a ela! V VI To my parents To my sister To my grandparents VII VIII Abstract The resistance of microorganisms to antibiotics is, in our days, one of the biggest problems in terms of public health. The research for new artificial and natural families of compounds throws us towards innovative methodologies leading to novel antibiotics. In the present work, we are invited to dive in the “new world” of 1,3- oxazoline-2-thiones (OXTs, structure-type i) regarding their synthesis, reactivity and biological activity. In fact, this heterocycle is a simple synthon readily obtained by condensation of thiocyanic acid with an α-hydroxycarbonyl species. When compared to their non-aromatic counterpart 1,3-oxazolidine-2-thiones (OZTs, structure-type ii ), this family of compounds is still unexplored. S S HN O HN O R R' R R' i ii When the heterocycle is anchored on a carbohydrate template (i.e. a more complex chiral α-hydroxycarbonyl moiety), original structures are expected such as OZTs fused to five- or six-membered rings (structures-type iii , iv , v and vi) and OXTs C-C linked to sugars (structure-type vii) , with a broad potential in organic chemistry and bioorganic applications. RO RO O RO X OR O O HO O O O RO HO S HN O S Y OR O HN OR N OH S H OH OR NH O X= O, Y= NH S S X= NH, Y= O iii iv v vi vii IX The work developed in this PhD is presented in five chapters. In the first one, the formation and reactivity of sulfur and nitrogen centres of a simple OXT were investigated. In the second one, we have developed the synthesis of thionocarbamates fused to carbohydrate templates, as well as the study of the reactivity of the sulfur center in such bicyclic systems, leading to the formation of new carbohydrate-fused oxazolidinones (OZOs). The third chapter is dedicated to the synthesis and reactivity of C-C linked OXTs to a sugar moiety. Moreover, from the exploitation of the sulfur and nitrogen centers, different families of compounds were raised, such as pseudo-C-iminosugars and oxazoles. In the fourth chapter, we have explored the use of thioxo compounds as electrophiles in Pd-assisted cross-coupling methods, such as Suzuki and Stille reactions. A new modified Sonogashira cross-coupling reaction, in which copper (I) is used in catalytic amount, was developed and its feasibility was proven for a variety of substrates. In the last chapter, we focused on the biological potential of the new molecules. We have targeted a broad spectrum of antimicrobial activity for some OXTs and OZTs, to which was added a screening of glycosidases inhibition for the pseudo-C-iminosugars. X Resumo A resistência dos microorganismos aos antibióticos é um dos maiores problemas nos dias de hoje, em termos de saúde pública. É pois urgente desenvolver novas formas de combate a este problema, que nos orientem para a investigação de novos antibióticos naturais e artificiais. No âmbito deste projecto de investigação somos convidados a mergulhar no “novo mundo” das 1,3-oxazolina-2-tionas (OXTs), estudando a sua síntese, reactividade e actividade biológica. Este heterociclo aromático, de estrutura i, é um composto facilmente obtido através da condensação do ácido tiociânico com uma unidade estrutural α-hidroxicarbonilo e, ao contrário dos compostos com o anel não aromático 1,3-oxazolidina-2-tiona (OZT, estrutura ii) , não está bem estudado, sendo a literatura bastante escassa no que respeita a esta família de heterociclos. S S HN O HN O R R' R R' i ii A ligação de OXTs a hidratos de carbono modelo, que possuem a unidade α- hidroxicarbonilo, conduz à formação de estruturas originais, como por exemplo derivados de OZT fusionada a açúcares de cinco e seis membros (estruturas de tipo iii , iv , v e vi) , bem como pseudo-C-nucleósidos de tipo vii , com enorme potencial em química orgânica e em aplicações bioorgânicas. RO RO O RO X OR O O HO O O O RO HO S HN O S Y OR O HN OR N OH S H OH OR NH O X= O, Y= NH S S X= NH, Y= O iii iv v vi vii O projecto desenvolvido neste doutoramento é apresentado em cinco capítulos. XI Numa primeira parte do projecto, foram investigadas as condições ideais para a síntese de OXTs, tendo sido demonstrado que a sua formação é possível com uma vasta gama de solventes e ácidos, sendo o aspecto mais importante a escolha do par solvente/ácido para efectuar a reacção. Esta primeira parte foi também dirigida para o estudo de reactividade padrão do enxofre e do azoto, envolvendo processos de alquilação, acilação, sulfonilação e adições de tipo Michael. Durante todos estes processos, verificou-se que a aromaticidade do anel assume um papel muito importante na reactividade do enxofre e, em especial, na do azoto, ficando demonstrado que a reactividade de OXTs é completamente diferente da descrita na literatura referente às OZTs. Numa segunda parte do trabalho, os nossos esforços concentraram-se na síntese de tionocarbamatos fusionados a hidratos de carbono modelo, com estruturas de tipo iii , iv, v e vi . Assim, envolvendo reacções de protecção, desprotecção e oxidação, foi introduzida a unidade α-hidroxicarbonilo em açúcares a partir dos compostos 1,2-isopropilideno-α-D-xylofuranose, α-D-glucopiranósido de metilo e β- D-glucopiranósido de metilo. Estas α-hidroxicetonas complexas foram utilizadas como precursores das moléculas-alvo, as OXTs fusionadas aos acúcares. No entanto, a condensação com o ácido tiociânico conduziu à formação de OXTs fusionadas hidratadas, que revelaram uma maior estabilidade em relação às correspondentes OXTs fusionadas. Muito importante é também o facto de a estereoquímica destas OXTs fusionadas hidratadas depender absolutamente da posição e da orientação do grupo hidroxilo envolvido na reacção – uma relação cis foi sempre verificada. Quando a condensação com o ácido tiociânico é realizada entre as posições 2 e 3 do hidrato de carbono, a configuração da posição anomérica mostra ter influência decisiva na formação das OXTs hidratadas – para os α-glicósidos, em que se observa a relação 1,2-cis , a reacção de condensação mostra-se ineficaz. No entanto, quando a condensação é efectuada nos β-glicósidos, a mesma decorre sem problemas e com bons rendimentos. XII Após protecção do enxofre através de uma reacção de S-benzilação e tratamento com ácido tríflico foi possível a desidratação dos compostos de tipo iii, conduzindo à formação das correspondentes OXTs fusionadas.
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