Supporting information (Tables S1–S2, Supporting data S1; Fig S1): Granite boulders act as deep-time climate refugia: a Miocene divergent clade of rupicolous Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the Mysore Plateau, India, with descriptions of three new species

ISHAN AGARWAL, TEJAS THACKERAY, SAUNAK PAL & AKSHAY KHANDEKAR

Table S1. Additional sequences used for divergence dating in this study. Museum abbreviations as follows: ABTC, Australian Biological Tissue Collection, South Australian Museum, Adelaide; ADS, Anslem de Silva field series; AMB, Aaron M. Bauer field series; AMS, Australian Museum; BPBM, Bernice P. Bishop Museum; BNHS ,Bombay Natural History Society, ; CAS, California Academy of Sciences; CD, Charles Daugherty field series; CES G (Karanth lab field series) and CES L (Kartik Shanker lab field series), Centre for Ecological Sciences, Bangalore; CHUNB, Coleção Herpetológica da Universidade de Brasília; CJS, Christopher J. Schneider field series; CUMZ, Chulalongkorn University Museum of Zoology; DB, Don Buden; DJH, D. James Harris; EBG, Eli B. Greenbaum field series; FG/MV, Frank Glaw and Miguel Vences; FGZC, Frank Glaw; FLMNH, Florida Museum of Natural History; FT, frozen tissue collection of Victoria University of Wellington; GVH, Gerald V Haagner; IEBR, Institute of Ecology and Biological Resources (Hanoi); IRSNB, Institute des Sciences Naturelles du Belgique, Brussels; ITB, Institute of Tropical Biology Collection of Zoology; JB, Jon Boone; JEM, John E. Measey; KU, University of Kansas Natural History Museum, Lawrence; LJAMM, Luciano J. Avila and Mariana Morando; LLG, L. Lee Grismer field series; LSHUC, La Sierra University Herpetological Collection, L. Lee Grismer; MCZ, Museum of Comparative Zoology, Harvard University; MTSN, Trento Museum of Natural Sciences; MV, Museum of Victoria; MVZ, Museum of Vertebrate Zoology, Berkeley; MZUSP, Museu de Zoologia da Universidade de São Paulo; NCBS ,National Centre for Biological Sciences, Bangalore; NJNUh, Nanjing Normal University, Jiangsu, China; NMZ, National Museum of Zimbabwe; PEM, Port Elizabeth Museum; PMNH, Pakistan Museum of Natural History; QM, Queensland Museum; RAH, Rod A. Hitchmough; RMB, Rafe M. Brown; ROM, Royal Ontario Museum; SAM, South Australian Museum; SC, Salvador Carranza; SYS, the Museum of Biology, Sun Yat-sen University (SYS), Guangzhou; TG, Tony Gamble; USNM, National Museum of Natural History, Smithsonian Institution; WBJ, W. Bryan Jennings; WDH, Wulf D. Haacke; YPM, Yale Peabody Museum, New Haven; ZCMV, Miguel Vences; ZMKU TM, Zoological Museum, Kasetsart University, Bangkok, Thailand; ZRC, Zoological Reference Collection, Raffles Museum.; ZSM, Zoologische Staatssammlung München.

Species Tissue voucher Locality GenBank Accession Aeluroscalabotes felinus JB 16 Cameron Highlands, Malaysia JX041301 Afroedura loveridgei GVH 3969 Mozambique JX041303 Agamura persica FMNH 247474 Gwadar Division, Balochistan, Pakistan JX440515 Alsophylax pipiens CAS 238804 Mongolia, Khovd, 1km N of Bulgam KC151973 Aprasia parapulchella MVD66569 Bendigo Whipstick, Victoria, Australia GU459941 Aristelliger praesignis USNM 337563 Kingston, St. Andrew Parish, Jamaica JX041312 Asaccus platyrhynchus CAS 227605 Wilayat Nazwa, Oman JX041313 Calodactylodes illingworthorum AMB7415 Sri Lanka, Pitakumbura JX041318 Carphodactylus laevis AMS 143258 Lamb Range, Queensland, Australia GU459943 Chondrodactylus fitzsimonsi MCZ R185712 Namibia, Gai-as spring JN393945 Christinus marmoratus AMS 135338 Wirralie, Ladysmith, New South Wales, JX041322 Australia Cnemaspis africana CAS 168872 Amani, Tanga, Tanzania JX041323 Cnemaspis dickersonae MTSN 8604 Uzungwa Scarp, Tanzania JX041324 Cnemaspis kendalii LSHUC6562 Selangor, Malaysia JX041326 Cnemaspis limi LSHUC 6267 Pulau Tioman, Malaysia JX041327 Cnemaspis siamensis USNM 594370 Myanmar, Tanintharyi Region, MN104945 Coleodactylus cf. brachystoma CHUNB 43901 São Domingos, Goiás, Brazil JX041331 Coleonyx brevis TG 00194 Hudspeth County, Texas, USA JX041333 Colopus wahlbergii NMZ 16974 Kalamba Station, Kazungula Dist., JX041337 Zambia Crenadactylus ocellatus AMS R162089 Trephina Gorge, Northern Territory, JX024364 Australia Cyrtodactylus albofasciatus CES09/1109 , Chikmagalur District, KM878626 Cyrtodactylus angularis FMNH 265815 Thailand, Sa Kaeo, Muang Sa Kaeo JX440523 Cyrtodactylus ayeyarwadyensis CAS 216459 Myanmar, Rakhine State, Than Dawe JX440526 District Cyrtodactylus battalensis PMNH 2301 Pakistan, NWFP, Battagram City KC151983 Cyrtodactylus collegalensis CES09/1444 Karnataka, Chamarajanagar District, KM878627 base of MM Hills Cyrtodactylus deccanensis CES09/1243 , Thane District, Malshej KM878614 Cyrtodactylus jeyporensis CES09/1356 Andhra Pradesh, Visakhapatnam KM878616 District, Arakku Valley Cyrtodactylus nebulosus CES09/1205 Orissa, Koraput District, Gupteswar KM878621 Cyrtodactylus triedra AdS 35 Sri Lanka, Yakkunehela JX440522 Cyrtodactylus varadgirii CES09/1381 , Navsari District, Chikli KM878612 Cyrtopodion' kohsulaimanai PMNH 2388 Sakhi Sarwar, Pakistan KC151965 Delma butleri SAM R36144 Coonbah, New South Wales, Australia AY134584 Diplodactylus tesselatus AMS 143855 Stonehenge area, Queensland, JQ173631 Australia Dixonius vietnamensis FMNH 263003 Cambodia, Mondolkiri Province, Keo EU054297 Seima district Ebenavia inunguis ZCMV 2099 Cambonia Marojejy, Madagascar JX041348 Elasmodactylus tetensis PEM 5551 Niassa Game Reserve, Mozambique JX041349 Eublepharis macularius TG00081 Pakistan JX041350 Euleptes europaea No ID Liguria, Italy JN393941 Garthia gaudichaudii SC 1 Chile JX041351 Geckolepis maculata FGZC 463 Montagne d'Ambre, Madagascar EU054235 Gehyra dubia AMS 152245 Daydawn, New South Wales, Australia JN393911 Gehyra mutilata AMS 139934 Australia, Western Australia, El Questro JN019081 Gehyra oceanica USNM 559790 Palau: Ngkesill Island JN393924 Gehyra robusta AMS NR2429 Australia: Queensland, 17.7KM N JN393928 Barkly Hwy via Kajabbi Rd Gehyra variegata AMS136026 Australia: Northern Territory, vic. 8-mile JN393916 bore Gehyra xenopus AMS140173 Australia: Western Australia, Mitchell JN393932 Plateau Gekko badenii JB 13 Vietnam JN019065 Gekko chinensis LSHUC 4209 Wuzhi Shan, Hainan Id., China JN019058 Gekko monarchus LLG 4824 West Malaysia, Selangor, Kepong, JN019078 FRIM Gekko smithi LLG 7648 West Malaysia, Johor, Endau-Rompin, JN019056 Peta Gekko vittatus AMS 138865 Vanuatu, Gaua Island JN019072 Goggia lineata AMB4762 Park, Northern Cape Prov., South JX041353 Africa Hemidactylus angulatus EBG 746 Guinea, Daniah village at Koulete River HM559620 Hemidactylus mabouia AMB 8301 South Africa, Limpopo Prov., nr. HM559638 Huntleigh Hemidactylus macropholis CAS 227520 Bari Region, JX041369 Puntland State, Somalia Hemidactylus prashadi JB 30 India (captive specimen) HM559644 Hemiphyllodactylus arakuensis BNHS 2275 Araku, Visakhapatnam District, Andhra MK570109 Pradesh Hemiphyllodactylus dushanensis n/a Guizhou, China FJ971016 Hemiphyllodactylus harterti LSUHC 10384 Bukit Larut, Malaysia KF219761 Hemiphyllodactylus jnana CES G174 India, Karnataka, Bangalore, IISc MK570112 Holodactylus africanus CAS 198845 Kajiado District, Kenya JX041372 Homonota darwinii LJAMM 4601 Puerto Deseado, Santa Cruz, Argentina JX041373 Homopholis walbergii AMB 8410 n/a EU054244 Hoplodactylus duvaucelii FT(VUW) 174 Mercury Island, New Caledonia GU459843 Hoplodactylus pacificus CD853 Pupuha, New Caledonia GU459787 Kolekanos plumicaudus WDH 1 Parque Nacional do Iona, Cunene JX041304 Prov., Angola Lepidodactylus lugubris ZRC 24847 Singapore JN393944 Lepidodactylus orientalis BPBM 19794 Papua New Guinea: Sudest Island JN019080 Lialis jicari n/a Australia AY369025 Lucasium stenodactylum AMS 139897 Western Australia, Australia JQ173630 Luperosaurus cumingii RMB 3546 Philippines, Cumiagi JX515623

Lygodactylus miops ZSM 116/2004 Andohahela, Madagascar KM034118 Matoatoa brevipes FG/MV Tulear area, Madagascar EF490777 2002.2237 Mediodactylus brachykolon PMNH 2165 Pakistan, NWFP, Battagram City KC151981 Mediodactylus russowii JEM 863 Kazakhstan, Ili River JX440517 Nactus vankampeni BPBM 23365 Papua New Guinea, East Sepik EU054295 Province, Wewak Naultinus elegans No ID Whangarei, New Zealand GU459757 Nephrurus levis AMS 140561 Western Australia, Australia AY369018 Oedodera marmorata CAS 230936 Paagoumène, New Caledonia GU459947 Oedura marmorata AMS 143861 Australia, Queensland GU459951 Pachydactylus gaiasensis AMB 7596 Gai-As, Namibia JX041391 Paradelma orientalis QM J56089 20 km N Capella, Queensland, AY134605 Australia Paragehyra gabriellae FGZC 2366 Grotte Ampasy, Madagascar JX041399 Paroedura picta FG/MV 2002.B1 Berenty, Madagascar EF536197 Perochirus ateles DB Dmale Dehpelhi Id., Pohnpei, Federated JN393938 States of Micronesia Phelsuma astriata - - EU423286 Phelsuma borbonica JB 95 Réunion JX041400 Phelsuma inexpectata JB 56 Réunion (captive) JN393939 Phelsuma ornata - - EU423282 Phelsuma rosagularis n/a Mauritius EU423292 Phyllodactylus xanti ROM 38490 Mexico, Baja California Sur JN393940 Phyllopezus pollicaris MZUSP 92491 das Confusões, Piauí, Brazil JX041417 Pseudogekko smaragdina KU 303995 Philippines: Quezon JX515626 Pseudogonatodes guianensis KU 222142 Loreto, Peru JX041421 Pseudothecadactylus lindneri MVZ 99544 Kakadu Natl. Park, NT, Australia GU459946 Ptyodactylus guttatus TG 00072 Egypt (captive) JX041426 Pygopus lepidopodus WBJ 1206 Western Australia, Australia AY134603 Pygopus nigriceps MVZ 197233 Australia, Northern Territory JX440518 Quedenfeldtia trachyblepharus MVZ 178121 Oukaimeden, Morocco JX041428 Ramigekko swartbergensis JB 47 Swartberg Mts., Western Cape Prov., JX041305 South Africa Rhoptropella ocellata CAS 186351 Richtersveld National Park, Northern JX041429 Cape, South Africa Rhoptropus diporus MCZ R183737 Brandberg Wes Myn, Namibia JX041432 Saltuarius swaini AMS 143262 Lamb Range, Queensland, Australia JX024356 Saurodactylus fasciatus DJH M616 Zumi, Morocco JX041434 Saurodactylus mauritanicus DJH Sm61 NW of Ain Benimather,Morocco JX041435 Sphaerodactylus elegans YPM 14795 Monroe County, Florida, USA JN393942 Sphaerodactylus grandisquamis TG0099 Puerto Rico KP640637 Sphaerodactylus nigropunctatus FLMNH 144010 Long Island, Bahamas JX041439 Sphaerodactylus roosevelti CAS 198428 USA, Puerto Rico JN393943 Sphaerodactylus torrei JB 34 Cuba JX440519 Tarentola deserti JB 44 unknown JX041445 Thecadactylus rapicauda USNM 561446 St. Croix, U.S. Virgin Islands JX041456 Uroplatus henkeli FG/MV 2000.C1 Nosy Be, Madagascar EF490796 Woodworthia maculata RAH 292 New Zealand, Titahi Bay GU459852

Table S2. Indian Cnemaspis species and the locality information used in climate analyses. Species Type locality Latitude Longitude Cnemaspis ajijae Maharashtra, Satara District, 17.9263 73.6566 Cnemaspis amba Maharashtra, Kolhapur District, 16.928 73.796 Amba Cnemaspis Maharashtra, Sindhudurg District, 15.96 73.999 amboliensis Amboli Cnemaspis Maharashtra, Sindhudurg District, 15.96 73.999 flaviventralis Amboli Cnemaspis girii Maharashtra, Satara District, Kaas 17.723 73.819 Cnemaspis goaensis , South Goa District, Cancona 14.974 74.205 Cnemaspis Maharashtra, Kolhapur District, 16.371 73.864 kolhapurensis Dajipur Cnemaspis Maharashtra, Satara District, 17.413 73.731 koynaensis Koyna Cnemaspis limayei Maharashtra, Sindhudurg District, 16.3678 73.8044 Marutiwadi Cnemaspis mahabali Maharashtra, Raigad District, 18.4582 73.393 Bhira Cnemaspis anandani , Nilgiri District, 11.416 76.82 Horasholai Cnemaspis Tamil Nadu, Coimbatore district, 11.091 76.793 anaikattiensis Anaikatti Hills Cnemaspis Karnataka, Uttara Kannada District 15.09809 74.547 heteropholis Gund Cnemaspis indica Tamil Nadu, Nilgiris 11.42659 76.90269 Cnemaspis , Wildlife 11.898 75.906 kottiyoorensis Sanctuary Cnemaspis littoralis* Kerala, Chaliyam coast 11.16 75.808 Cnemaspis Kerala, Wynaad 11.4189 76.16315 monticola Cnemaspis nilagirica Tamil Nadu, Nilgiris 11.42659 76.90269 Cnemaspis Tamil Nadu, Sispara 11.4189 76.16315 sisparensis* Cnemaspis Kerala, Wynaad 11.4189 76.16315 wynadensis Cnemaspis Kerala, Kollam District, Thenmala 8.959972 77.07517 aaronbaueri Cnemaspis Kerala, Reserve Forest 10.166 76.997 anamudiensis Cnemaspis australis Tamil Nadu, Tinnevelly 11.4189 76.16315 Cnemaspis Tamil Nadu, South Tinnevelly, and 11.4189 76.16315 beddomei* Kerala, Travankor Hills 3000–5000 feet Cnemaspis gracilis Kerala, Palghat Hills, 11.4189 76.16315 Cnemaspis Kerala, Shendurney Wildlife 8.827 77.217 maculicollis Sanctuary Cnemaspis nairi Kerala, , >600 m asl. 11.4189 76.16315 Cnemaspis ornata Tamil Nadu, South Tinnevelly Hills 11.4189 76.16315 Cnemaspis adii Karnataka, Ballari District, Hampi 15.321 76.472 Cnemaspis agarwali Tamil Nadu, Salem District, 11.5 77.859 Sankari, Kidayur road Cnemaspis bangara Karnataka, Kolar District, 13.135 78.093 sp. nov. Paparajanahalli Cnemaspis Andhra Pradesh, Chittoor District, 13.645 78.403 graniticola sp. nov. Horsley hills Cnemaspis Tamil Nadu, Vellore District, 12.6 78.633 yelagiriensis sp. Yelagiri hills nov. Cnemaspis Karnataka, Bangalore, Agara 12.846 77.49 mysoriensis village Cnemaspis otai Tamil Nadu, Vellore district, 12.932 79.149 Vellore Fort Cnemaspis Tamil Nadu, Salem District,, 11.819 78.27 shevaroyensis Yercaud, Kottachedu Kari Raman Temple Cnemaspis Tamil Nadu, Salem District, 11.775 78.219 thackerayi Yercaud, Grange resort Cnemaspis Tamil Nadu, Salem District, 11.775 78.219 yercaudensis Yercaud, Grange resort

Supporting data S1. Specimens morphologically examined Cnemaspis adii: BNHS 2464, and BNHS 2465 from near Hampi, Ballary District, Karnataka state, India. Cnemaspis agarwali: holotype NCBS-AU486 (adult male); paratypes NCBS-AU487, BNHS 2337, NCBS- AU488, NCBS-AU490, and BNHS 2338, (adult males), NCBS-AU485, BNHS 2336, and BNHS 2339, (adult females), from near Kidayur road, Sankari, Salem District, Tamil Nadu state, India Cnemaspis ajijae: holotype, BNHS 2456 (adult male), from near Mahabaleshwar; paratype, BNHS 2457 (female) from , Satara District, Maharashtra, India. AK 321, AK 322, AK 323, AK 324, AK 325, AK 326, AK 327, AK 328, AK 329, AK 330, AK 331, AK 332, AK 357, AK 429, AK 430, AK 431, AK 432, AK 433, AK 434, AK 435, AK 436, AK 437, AK 438, from Mahabaleshwar, Satara District, Maharashtra, India. Cnemaspis amba: holotype, NCBS-BH690 (adult male); paratypes, BNHS 2542 (adult male), NCBS-BH691, BNHS 2543, BNHS 2544 (adult females), from near Kokan Darshan Point, Manoli village, near Amba, Kolhapur District, Maharashtra, India. Cnemaspis amboliensis: holotype, BNHS 2458 (adult male); paratypes, BNHS 2459 (adult female), BNHS 2504, BNHS 2506, BNHS 2507, BNHS 2508, and BNHS 2505 (adult males), from Amboli, Sindhudurg District, Maharashtra, India. AK 181, AK 190, AK 191, AK 192, AK 194 from Parpoli, near Amboli, Sindhudurg District, Maharashtra, India. Cnemaspis flaviventralis: holotype, BNHS 2442, (adult male), paratypes, BNHS 2443 (male), BNHS 2444 (female), from Amboli, Sindhudurg District, Maharashtra, India. AK 186, AK 187, AK 188, AK 189, AK 193, from Amboli, Sindhudurg District, Maharashtra, India. Cnemaspis girii: holotype, BNHS 2299 (adult male); paratypes, BNHS 2079, BNHS 2081 (males), BNHS 2078, BNHS 2080 (females), from Kaas Plateau, Satara District, Maharashtra, India. AK 439, AK 440, AK 441, AK 442 from Kaas Plateau, Satara District, Maharashtra, India. Cnemaspis goaensis: AK 358, AK 359, AK 360, AK 361, from Cancona, South Goa District, Goa, India. AK 195, AK 196, AK 197, AK 198, AK 199, VG 403, VG 404, VG 405, VG 406, from Sangli, Sangli District, Maharashtra, India. AK 177, AK 178, AK 179, AK 180, AK 182, AK 183, AK 184, from Gund, Uttara Kanada District, Karnataka; AK 185, from Ganeshgudi, Uttara Kanada District, Karnataka. Cnemaspis gracilis: CESG385 from near Chittur river, , Kerala, India. AK 133, AK 134, AK 135, AK 136, AK 137, AK 138, AK 139, AK 140, AK 141, AK 142, AK 143, AK 144, from Valparai town, Coimbatore District, Tamil Nadu, India. Cnemaspis indica: BNHS 1252-10 (male), and BNHS 1252-1 (female), from Nilgiris, Tamil Nadu state, India. BNHS 2515, BNHS 2516, from , Tamil Nadu state, India. Cnemaspis kolhapurensis: holotype, BNHS 1855 (adult male); paratypes, BNHS 1843, BNHS 1844, BNHS 1845, BNHS 1846 and BNHS 1847 from Dajipur, Kolhapur District, Maharashtra, India. AK 370, AK 371 from Dajipur, Kolhapur District, Maharashtra, India. Cnemaspis kottiyoorensis: BNHS 2519 from Kannur, Kerala state, India. Cnemaspis koynaensis: holotype, NCBS-BH685 (adult male); paratypes, NCBS-BH687, NCBS-BH688, NCBS- BH689, BNHS 2538, BNHS 2541 (adult males), NCBS-BH686, BNHS 2539, BNHS 2540 (adult females), from near Dhanagarwada, Humbarli village, near Koyna, Satara District, Maharashtra, India. Cnemaspis limayei: Holotype, BNHS 2454 (adult male); paratype BNHS 2455 (female), from Marutiwadi, near Phondaghat, Sindhudurg District, Maharashtra, India. Cnemaspis littoralis: BNHS 1150 (male), from , Malabar, Kerala state, India. BNHS 2517, BNHS 2518 from the , Kerala state, India. Cnemaspis mahabali: holotype, BNHS 2449 (adult male); paratypes, BNHS 2502 and BNHS 2450 (adult males), BNHS 2451 and BNHS 2503 (adult females), from Bhira, near Tamhini, Pune District, Maharashtra, India. Cnemaspis mysoriensis: AK569, AK570, AK 571 from National Centre for Biological Sciences (NCBS) campus, Bengaluru, Bengaluru District, Karnataka, India. Cnemaspis otai: BNHS 2511, and BNHS 2512 from Vellore Fort, Vellore District, Tamil Nadu state, India. Cnemaspis shevaroyensis: holotype NCBS-BH674 (adult male); paratypes BNHS 2530, BNHS 2531, (adult males), NCBS-BH675, NCBS-BH674, BNHS 2529, (adult females), from near Kottachedu Kari Raman Temple, Yercaud, in the Shevaroys, Salem District, Tamil Nadu state, India. Cnemaspis thackerayi: holotype NCBS-BH670 (adult male); paratypes NCBS-BH671, BNHS 2527, (adult males), NCBS-BH672, NCBS-BH673, BNHS 2526, BNHS 2528, (adult females), from near Grange resort, Yercaud town, in the Shevaroys, Salem District, Tamil Nadu state, India. Cnemaspis yercaudensis: NCBS-BH678 (adult male), and NCBS-BH677 (adult female), from near Grange resort, Yercaud town, in the Shevaroys, Salem District, Tamil Nadu state, India. NCBS-BH679, BNHS 2533 (adult males), NCBS-BH680, BNHS 2532, BNHS 2534 (adult females), from near Nallathambi resort, Kollimalai, Namakkal District, Tamil Nadu state, India.

KMTR Supporting information Fig S1 Ponmudi Granite boulders act as deep-time climate refugia: a Miocene divergent clade of rupicolous Meghamalai Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the Mysore Plateau, India, with Wayanad descriptions of three new species Munnar Kodaikanal ISHAN AGARWAL, TEJAS THACKERAY, SAUNAK PAL & AKSHAY KHANDEKAR Hemidactylus angulatus Hemidactylus prashadi Hemidactylus mabouia Hemidactylus macropholis Cyrtodactylus jeyporensis Cyrtodactylus nebuolsus Cyrtodactylus collegalensis Cyrtodactylus varadgirii Cyrtodactylus albofasciatus Cyrtodactylus deccanensis Cyrtodactylus triedrus Cyrtodactylus angularis Cyrtodactylus ayeyarwadyensis Cyrtodactylus battalensis Mediodactylus brachykolon Mediodactylus russowi Cyrtopodion kohsulaimanai Agamura persica Calodacatylodes illingworthorum Alsophylax pipiens Cnemaspis siamensis Cnemaspis limi Cnemaspis kendalii Gehyra robusta Gehyra mutilata Gehyra dubia Gehyra variegata Gehyra xenopus Gehyra oceanica Hemiphyllodactylus arakuensis Hemiphyllodactylus jnana Hemiphyllodactylus dushanensis Hemiphyllodactylus harterti LSUHC10384- Paroedura picta Nactus pelagicus Pachydactylus gaiasensis Colopus wahlbergii Chondrodactylus fitzsimonsi Elasmodactylus tetensis Rhoptropus diporus Afroedura loveridgei Goggia lineata Homophopholis walbergii Paragehyra gabriellae Geckolepis maculata Lygodactylus miops Uroplatus henkeli Phelsuma inexpectata Phelsuma ornata Phelsuma rosagularis Phelsuma borbonica Phelsuma astriata Rhoptropella ocellata Kolekanos plumicaudus Afrogecko swartbergi Christinus marmoratus Matoatoa brevipes Dixonius vietnamensis Ebenavia inunguis Cnemaspis_kandiana_AMB7431 SSK15.1_organism_Cnemaspis_kumarasinghei SSK6.0_organism_Cnemaspis_gotaimbarai SSK16.0_organism_Cnemaspis_nandimithrai Cnemaspis_silvula_AA88 Cnemaspis_kumarasinghei_AA49 SSK1.2_organism_Cnemaspis_butewai Cnemaspis_kandiana_AMB7508_pulchra Cnemaspis_sp_AA87 Cnemaspis_latha_AA05 SSK4.0_organism_Cnemaspis_kivulegedarai Cnemaspis_upendrai_AA83 SSK24.1_organism_Cnemaspis_pava Cnemaspis_tropidogaster_AMB7505 Cnemaspis_kandiana_AMB7448 Cnemaspis_kallima_AA82 Cnemaspis_kandiana_AA57 Cnemaspis_sp_AA17 MN104950.1_Cnemaspis_thayawthadangyi MN104944.1_Cnemaspis_tanintharyi Cnemaspis_modigliani_MVZ239314 Cnemaspis_SB048_Pushpagiri Cnemaspis_sp_J239 AK107_Cnemaspis_sp AK_212_Cnemaspis_sp_colourful AK_204_Cnemaspis_sp_colourful Cn_G385_Palghat Cn_yercaud CN_roughYRC AK668_C_otaI 40.6_C_mysoriensis_NCBS BNHS2494_C_adii VG_385_Cnemaspis_Indranieldasi VG_394_Cnemaspis_Flavivantalis AK398_cnem_Phansad AK389_Cnem_Guhagar VG_408_Cnemaspis_cf_giri AK439_cnem_Kaas G349_Cnemaspis_sp_Koyna AK_362_Cnem_Daj VG354_Cnemaspis_sp_Amboli AK518_Cnem_Mhadei AK517_Cnem_Tillari AK429_Cnem_Mahab CESL839_Cnemaspis_Horseley AK292_C_KOLAR AK828_Cnem_bang_Yelagiri Cnemaspis_scalpensis_AMB7418 Cnemaspis_scalpensis_47A SSK3.0_organism_Cnemaspis_hitihami Cnemaspis_punctata_AA80 Cnemaspis_scalpensis_AMB7447 SSK23.0_organism_Cnemaspis_kohukumburai Cnemaspis_podihuna_AMB7449 Cnemaspis_podihuna_58A Cnemaspis_gemunu_AMB75072 Cnemaspis_gemunu_AMB7495 Cnemaspis_scalpensis_AA47 Cnemaspis_phillipsi_AA81 Cnemaspis_SB151_Athirapally dv40.2_CNEM_KERALA Cn_heterop DV404_CNEM_KOL_DAJ Gekko smithi Gekko monarchus Gekko chinensis Gekko badenii Gekko vittatus Pseudogekko smaragdina Lepidodactylus lugubris Lepdiodactylus orientalis Luperosaurus cumingii Cnemaspis africana Cnemaspis dickersonae Perochirus_ateles_DBDmale Garthia gaudichaudii Phyllopezus pollicaris Tarentola deserti Thecadactylus rapicauda Phyllodactylus xanti Homonota darwinii Ptyodactylus guttatus Asaccus platyrhynchus Sphaerodactylus grandisquamis Sphaerodactylus roosevelti Sphaerodactylus elegans Sphaerodactylus torrei Sphaerodactylus nigropunctatus Pseudogonatodes guianensis Coleodactylus cf. brachystoma Euleptes europaea Saurodactylus fasciatus Aristelliger praesignis Quedenfeldtia trachyblepharus Saurodactylus mauritanicus Eublepharis macularius Holodactylus africanus Aeluroscalabotes felinus Coleonyx brevis Hoplodactylus duvaucelii Woodworthia maculata Naultinus elegans Hoplodactylus pacificus Lucasium stenodactylum Diplodactylus tesselatus Oedura marmorata Crenadactylus ocellatus Pseudothecadactylus lindneri Oedodera marmorata Nephrurus levis Saltuarius swaini Carphodactylus laevis Pygopus lepidopodus Pygopus nigriceps Paradelma orientalis Delma butleri Aprasia parapulchella Lialis jicari

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