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Classification of Cell Death
Cell Death and Differentiation (2005) 12, 1463–1467 & 2005 Nature Publishing Group All rights reserved 1350-9047/05 $30.00 www.nature.com/cdd News and Commentary Classification of cell death: recommendations of the Nomenclature Committee on Cell Death G Kroemer*,1, WS El-Deiry2, P Golstein3, ME Peter4, D Vaux5, with or without, caspase activation and that ‘autophagic cell P Vandenabeele6, B Zhivotovsky7, MV Blagosklonny8, death’ represents a type of cell death with (but not necessarily W Malorni9, RA Knight10, M Piacentini11, S Nagata12 and through) autophagic vacuolization. This article details the G Melino10,13 2005 recommendations of NCCD. Over time, molecular definitions are expected to emerge for those forms of cell 1 CNRS-UMR8125, Institut Gustave Roussy, 39 rue Camille-Desmoulins, death that remain descriptive. F-94805 Villejuif, France 2 University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA Preface 3 Centre d’Immunologie INSERM/CNRS/Universite de la Mediterranee de Marseille-Luminy, Case 906, Avenue de Luminy, 13288 Marseille Cedex 9, It is obvious that clear definitions of objects that are only France shadows in Plato’s cage are difficult to be achieved. Cell death 4 The Ben May Institute for Cancer Research, University of Chicago, 924 E 57th and the different subroutines leading to cell death do not Street, Chicago, IL 60637, USA 5 escape this rule. Even worse, the notion of death is strongly Sir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, influenced by religious and cultural beliefs, which may UK 6 Molecular Signalling and Cell Death Unit, Department for Molecular Biomedical subliminally influence the scientific view of cell death. -
Meet the Gilded Lady 2 Mummies Now Open
Member Magazine Spring 2017 Vol. 42 No. 2 Mummies meet the gilded lady 2 mummies now open Seeing Inside Today, computerized inside of mummies, revealing CT scans of the Gilded Lady tomography (CT) scanning details about the person’s reveal that she was probably offers researchers glimpses age, appearance, and health. in her forties. They also suggest of mummified individuals “Scans like these are noninvasive, that she may have suffered like never before. By combining they’re repeatable, and they from tuberculosis, a common thousands of cross-sectioned can be done without damaging disease at the time. x-ray images, CT scans let the history that we’re trying researchers examine the to understand,” Thomas says. Mummy #30007, known as the Gilded Lady, is one of the most beautifully preserved mummies from The Field Museum’s collection, and one of 19 now on view in the special exhibition Mummies. For decades, keeping mummies like this one well preserved also meant severely limiting the ability of researchers to study them. The result is that little was known about the Gilded Lady beyond what could be gleaned from the mummy’s exterior, with its intricate linen bindings, gilded headdress, and painted facial features. Exterior details do offer some clues. The mummy dates from 30 BC–AD 395, a period when Egypt was a province of the Roman Empire. While the practice of mummification endured in Egypt, it was being transformed by Roman influences. Before the Roman era, for example, mummies had been placed in wooden coffins, while the Gilded Lady is preserved in only linen wrappings and cartonnage, a papier mâché-like material. -
Place Names Describing Fossils in Oral Traditions
Place names describing fossils in oral traditions ADRIENNE MAYOR Classics Department, Stanford University, Stanford CA 94305 (e-mail: [email protected]) Abstract: Folk explanations of notable geological features, including fossils, are found around the world. Observations of fossil exposures (bones, footprints, etc.) led to place names for rivers, mountains, valleys, mounds, caves, springs, tracks, and other geological and palaeonto- logical sites. Some names describe prehistoric remains and/or refer to traditional interpretations of fossils. This paper presents case studies of fossil-related place names in ancient and modern Europe and China, and Native American examples in Canada, the United States, and Mexico. Evidence for the earliest known fossil-related place names comes from ancient Greco-Roman and Chinese literature. The earliest documented fossil-related place name in the New World was preserved in a written text by the Spanish in the sixteenth century. In many instances, fossil geonames are purely descriptive; in others, however, the mythology about a specific fossil locality survives along with the name; in still other cases the geomythology is suggested by recorded traditions about similar palaeontological phenomena. The antiquity and continuity of some fossil-related place names shows that people had observed and speculated about miner- alized traces of extinct life forms long before modern scientific investigations. Traditional place names can reveal heretofore unknown geomyths as well as new geologically-important sites. Traditional folk names for geological features in the Named fossil sites in classical antiquity landscape commonly refer to mythological or and modern Greece legendary stories that accounted for them (Vitaliano 1973). Landmarks notable for conspicuous fossils Evidence for the practice of naming specific fossil have been named descriptively or mythologically locales can be found in classical antiquity. -
The Biochemistry of Cell Death Cell Death: Apoptosis and Other Means to an End, Second Edition by Douglas R
Zampieri et al. Cell Death and Disease (2020) 11:259 https://doi.org/10.1038/s41419-020-2465-5 Cell Death & Disease BOOK REVIEW Open Access The biochemistry of cell death Cell Death: Apoptosis and Other Means to an End, Second Edition by Douglas R. Green, St. Jude Children’s Research Hospital, Cold Spring Harbor Laboratory Press, New York, 2018 Carlotta Zampieri 1, Carlo Ganini 1 and Gerry Melino 1 Can we impress you with a mind-blowing revelation? Douglas Green is one of the worldwide leading experts “Cells are not eternal in our bodies, but rather they on apoptosis and cell death. He has dealt with the role of encounter death!”1. cell death in the regulation of cancer and immune If someone pronounces this sentence at a biology class, response, studying the molecular events that drive the students will laugh. Why? Because cell death has been process, focusing on the induction-activation of apoptosis studied since the 60s of the last century. When we speak in T cells and the role of Myc, death receptors and Bcl-2 about apoptosis nowadays, we regard it as a well-known in this context. His deep understanding of the field truth. Anyway, this truth did not catch the attention of allowed him to write the first edition of this book in a scientists until the 1980s, where the interest in the field clear and straightforward manner, enriched by extremely exploded, leading to a dramatic increase of publications. informative figures. His talent as a biologist, as well as a Cell death passed “from neglect to hysteria” in only a few communicator, has been condensed in this second edi- years, citing Martin Raff2, one of the founders of the field. -
Viruses and the Origin of Microbiome Selection and Immunity
The ISME Journal (2017) 11, 835–840 © 2017 International Society for Microbial Ecology All rights reserved 1751-7362/17 www.nature.com/ismej PERSPECTIVE Viruses and the origin of microbiome selection and immunity Steven D Quistad1,2,3, Juris A Grasis1, Jeremy J Barr1,4 and Forest L Rohwer1 1Department of Biology, San Diego State University, San Diego, CA, USA; 2Laboratoire de Colloïdes et Matériaux Divisés (LCMD), Institute of Chemistry, Biology, and Innovation, ESPCI ParisTech/CNRS UMR 8231/PSL Research University, Paris, France; 3Laboratoire de Colloïdes et Matériaux Divisés (LCMD), Institute of Chemistry, Biology, and Innovation, ESPCI ParisTech/CNRS UMR 8231/PSL Research University, Paris, France and 4School of Biological Sciences, Monash University, Clayton, Victoria 3800, Australia The last common metazoan ancestor (LCMA) emerged over half a billion years ago. These complex metazoans provided newly available niche space for viruses and microbes. Modern day contemporaries, such as cnidarians, suggest that the LCMA consisted of two cell layers: a basal endoderm and a mucus-secreting ectoderm, which formed a surface mucus layer (SML). Here we propose a model for the origin of metazoan immunity based on external and internal microbial selection mechanisms. In this model, the SML concentrated bacteria and their associated viruses (phage) through physical dynamics (that is, the slower flow fields near a diffusive boundary layer), which selected for mucin-binding capabilities. The concentration of phage within the SML provided the LCMA with an external microbial selective described by the bacteriophage adherence to mucus (BAM) model. In the BAM model, phage adhere to mucus protecting the metazoan host against invading, potentially pathogenic bacteria. -
Issue of the FOSSIL
Official Publication of The Fossils, The Historians of Amateur Journalism The Fossil Volume 116, No. 3, Whole No. 383 Sunnyvale, California April 2020 Fossil Profile My Ajay Mentors by Linda Donaldson FOSSIL EDITOR Dave Tribby has asked me to provide a the beginning of a long love affair. It was almost the few thoughts on my friends and mentors in the world last press I saw exit my door. of amateur journalism. Though I’m not active now, He also introduced me to ajayers in my hometown thanks mostly to vision problems that make it hard to of Portsmouth, Ohio: Karl X. Williams and Charlie read the bundles, I was fortunate Phillips. The two of them were to have had several good men happy to share or sell me some of tors. I am still a Fossil—it’s hard their treasure troves of type or to totally desert the realm. necessary equipment. Much has It started with the one and been written of Karl, a Lone only J. Hill Hamon, whom I met Scout young printer in the 1920s, as my Biology professor at AAPA founding father, and a Transylvania University in Lex Fossil. To this day I possess a pa ington, Kentucky in January of per cutter I bought from Katie, 1972. I didn’t start learning the Karl’s widow. I was employed printing part until a short term about five years as a rubber class in December of 1972. He set stamp maker by Karl’s daughter out lots of old type on the Bio Pam and soninlaw Gary. -
Dual Effects of Thyroid Hormone on Neurons and Neurogenesis
Lin et al. Cell Death and Disease (2020) 11:671 https://doi.org/10.1038/s41419-020-02836-9 Cell Death & Disease ARTICLE Open Access Dual effects of thyroid hormone on neurons and neurogenesis in traumatic brain injury Chao Lin1,2, Nan Li3, Hanxiao Chang1,2,Yuqishen1,2,ZhengLi1,2,Wuwei1,2,HuaChen1,2,HuaLu1,2,JingJi 1,2 and Ning Liu1,2 Abstract Thyroid hormone (TH) plays a crucial role in neurodevelopment, but its function and specific mechanisms remain unclear after traumatic brain injury (TBI). Here we found that treatment with triiodothyronine (T3) ameliorated the progression of neurological deficits in mice subjected to TBI. The data showed that T3 reduced neural death and promoted the elimination of damaged mitochondria via mitophagy. However, T3 did not prevent TBI-induced cell death in phosphatase and tensin homolog (PTEN)-induced putative kinase 1 (Pink1) knockout mice suggesting the involvement of mitophagy. Moreover, we also found that T3 promoted neurogenesis via crosstalk between mature neurons and neural stem cells (NSCs) after TBI. In neuron cultures undergoing oxygen and glucose deprivation (OGD), conditioned neuron culture medium collected after T3 treatment enhanced the in vitro differentiation of NSCs into mature neurons, a process in which mitophagy was required. Taken together, these data suggested that T3 treatment could provide a therapeutic approach for TBI by preventing neuronal death via mitophagy and promoting neurogenesis via neuron–NSC crosstalk. 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; Introduction treatments focus only on preventing complications or Traumatic brain injury (TBI) is considered to be a providing support in nature. leading cause of substantial mortality and long-term dis- Thyroid hormone (TH) is crucial for neural stem cell ability among young adults worldwide1. -
The Carbon Cycle
The Carbon Cycle Overview of the Carbon Cycle The movement of carbon from one area to another is the basis for the carbon cycle. Carbon is important for all life on Earth. All living things are made up of carbon. Carbon is produced by both natural and human-made (anthropogenic) sources. Carbon Cycle Page 1 Nature’s Carbon Sources Carbon is found in the Carbon is found in the lithosphere Carbon is found in the Carbon is found in the atmosphere mostly as carbon in the form of carbonate rocks. biosphere stored in plants and hydrosphere dissolved in ocean dioxide. Animal and plant Carbonate rocks came from trees. Plants use carbon dioxide water and lakes. respiration place carbon into ancient marine plankton that sunk from the atmosphere to make the atmosphere. When you to the bottom of the ocean the building blocks of food Carbon is used by many exhale, you are placing carbon hundreds of millions of years ago during photosynthesis. organisms to produce shells. dioxide into the atmosphere. that were then exposed to heat Marine plants use cabon for and pressure. photosynthesis. The organic matter that is produced Carbon is also found in fossil fuels, becomes food in the aquatic such as petroleum (crude oil), coal, ecosystem. and natural gas. Carbon is also found in soil from dead and decaying animals and animal waste. Carbon Cycle Page 2 Natural Carbon Releases into the Atmosphere Carbon is released into the atmosphere from both natural and man-made causes. Here are examples to how nature places carbon into the atmosphere. -
The Mummy of All Dinosaurs Compare and Contrast Careful Work
Careful Work © Clipart.com Scientists are very careful when they © iClipart work on dinosaur presented by Science a-z a division of Learning A-Z fossils. They use bright The Mummy of All Dinosaurs lights and small tools. By Jane Sellman They use toothbrushes March 2008: Scientists have found the most to clean away dirt. complete dinosaur mummy ever. A dinosaur They do not want to © Louis Tremblay mummy is a kind of fossil. A fossil is a living hurt the fossils! It thing that died and turned into rock. A mummy takes a long time to Tyler Lyson, who found the dinosaur fossil has bones and skin or muscles. With this uncover a fossil. mummy, works on a fossil. mummy, even the insides turned into rock. Scientists are Compare and Contrast learning amazing things from this mummy. © National Geographic Television Art and Animation, © National Geographic Television Julius T. Csotonyi and 3D model by 422 South Julius T. Scientists have T. rex Hadrosaur learned that • Length: 40’ • Length: 36’ dinosaurs were • Speed: 20 mph • Speed: 28 mph © Louis Tremblay • Teeth: pointed for • Teeth: flat for even bigger than tearing meat chewing plants we thought! How else can you compare these two dinosaurs? See Mummy of All Dinos Tyler Lyson (on the right) uses a jackhammer © BigStockPhoto, Digital Studio on page 2 to remove rock from around fossils. © Learning A–Z, Inc. All rights reserved. 4 www.sciencea-z.com 1 Mummy of All Dinos Continued from page 1 Writing Prompt: There was a little space between each piece of How is this the mummy’s backbone. -
Fossil Record – Timing of Events and Extinction
Biology 1B—Evolution Lecture 11, Insights from the Fossil Record – timing of events and extinction Fossil Record (speciation) Microevolution Macroevolution The fossil record is our primary source of information on the past, including the timing of various extinction and evolutionary events and the phenotypes of ancestral forms. Sedimentary rocks created by erosion (often in a marine environment) form strata, with different layers corresponding to different time periods. Consider the Grand Canyon, formed by the Colorado River over 20 million years: the exposed strata, from the top of nearby Bryce Canyon to the bottom of the Grand Canyon itself, cover the last billion years. These layers can be dated by analyzing proportions of different isotopes present in each of the strata. Fossils provided both key evidence and frustration to Darwin when writing the Origin of the Species. Fossils showed there were many creatures which no longer existed; but these animals existed at some point, and must have been adapted to the environment in which they lived. This further reinforced the idea that the present and past are ruled by the same physical processes. However, it was frustrating in that many complex creatures seemed to suddenly appear in the fossil record, without preceding transitional forms. Darwin predicted that these gaps would be filled, and many of the gaps he predicted have now been filled. Some major transitions in earth history Billions of Years Ago Earth and Solar System formation 4.5 Earliest prokaryote fossils 3.5 Increase in oxygen – implies photosynthesis 2.7 Single-celled fossil eukaryotes 2.1-1.2 Complex metazoan (multi-celled animals) 0.5 Hominids (apes and humans) 0.005 The Cambrian Explosion is a time period from 550 million years ago (appearance of complex metazoans) when many species and new body forms appear in the fossil record. -
Fueling Extinction: How Dirty Energy Drives Wildlife to the Brink
Fueling Extinction: How Dirty Energy Drives Wildlife to the Brink The Top Ten U.S. Species Threatened by Fossil Fuels Introduction s Americans, we are living off of energy sources produced That hasn’t stopped oil and gas companies from gobbling in the age of the dinosaurs. Fossil fuels are dirty. They’re up permits and leases for millions of acres of our pristine Adangerous. And, they’ve taken an incredible toll on our public land, which provides important wildlife habitat and country in many ways. supplies safe drinking water to millions of Americans. And the industry is demanding ever more leases, even though it is Our nation’s threatened and endangered wildlife, plants, birds sitting on thousands of leases it isn’t using—an area the size of and fish are among those that suffer from the impacts of our Pennsylvania. fossil fuel addiction in the United States. This report highlights ten species that are particularly vulnerable to the pursuit Oil companies have generated billions of dollars in profits, and of oil, gas and coal. Our outsized reliance on fossil fuels and paid their senior executives $220 million in 2010 alone. Yet the impacts that result from its development, storage and ExxonMobil, Chevron, Shell, and BP combined have reduced transportation is making it ever more difficult to keep our vow to their U.S. workforce by 11,200 employees since 2005. protect America’s wildlife. The American people are clearly getting the short end of the For example, the Arctic Ocean is home to some of our most stick from the fossil fuel industry, both in terms of jobs and in beloved wildlife—polar bears, whales, and seals. -
Estimation of Postmortem Interval Based on Cell Death Progression in Biological Fluids
Estimation of Postmortem Interval Based on Cell Death Progression in Biological Fluids Author: Mónica Cristina Francisco Tomé Dissertation submitted to the Faculty of Medicine of University of Porto for the Master degree in Forensic Sciences Supervisor: Prof. Doutor Agostinho Almiro de Almeida (Faculty of Pharmacy, University of Porto) Co-supervisors: Prof. Doutor Agostinho José Carvalho dos Santos (Faculty of Medicine, University of Porto) Doutora Daniela Sofia Almeida Ribeiro (Faculty of Pharmacy, University of Porto) Porto, September 2017 Acknowledgments My special acknowledgments to: My supervisor Professor Agostinho Almeida that accepted to work with me and provided me the indispensable help to finish my master degree. My co-supervisor Professor Agostinho Santos, without him I would not be doing my dissertation, he opened my eyes and I am glad that he did. My co-supervisor Doctor Daniela Ribeiro that welcomed me with open arms and was always with me. Doctor Rui Almeida who is a very professional person and who was always ready to help me in whatever it takes! To Professor Eduarda Fernandes who was always present during the development of this study and was always trying to find solutions to the problems. To all of my friends, especially to Cátia Pereira, Margarida Pereira, Miguel Pinto and Sofia Salsinha, that provided me the emotional strength to continue to fight and get my motivation. To my parents and brother, that always listened to me and gave me the emotional support while I was far away from home. I have to thank also to all of those who were present during this period of my life and never let me give up.