Traveling Salesman Problem
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1 Steiner Minimal Trees
Steiner Minimal Trees¤ Bang Ye Wu Kun-Mao Chao 1 Steiner Minimal Trees While a spanning tree spans all vertices of a given graph, a Steiner tree spans a given subset of vertices. In the Steiner minimal tree problem, the vertices are divided into two parts: terminals and nonterminal vertices. The terminals are the given vertices which must be included in the solution. The cost of a Steiner tree is de¯ned as the total edge weight. A Steiner tree may contain some nonterminal vertices to reduce the cost. Let V be a set of vertices. In general, we are given a set L ½ V of terminals and a metric de¯ning the distance between any two vertices in V . The objective is to ¯nd a connected subgraph spanning all the terminals of minimal total cost. Since the distances are all nonnegative in a metric, the solution is a tree structure. Depending on the given metric, two versions of the Steiner tree problem have been studied. ² (Graph) Steiner minimal trees (SMT): In this version, the vertex set and metric is given by a ¯nite graph. ² Euclidean Steiner minimal trees (Euclidean SMT): In this version, V is the entire Euclidean space and thus in¯nite. Usually the metric is given by the Euclidean distance 2 (L -norm). That is, for two points with coordinates (x1; y2) and (x2; y2), the distance is p 2 2 (x1 ¡ x2) + (y1 ¡ y2) : In some applications such as VLSI routing, L1-norm, also known as rectilinear distance, is used, in which the distance is de¯ned as jx1 ¡ x2j + jy1 ¡ y2j: Figure 1 illustrates a Euclidean Steiner minimal tree and a graph Steiner minimal tree. -
Extended Branch Decomposition Graphs: Structural Comparison of Scalar Data
Eurographics Conference on Visualization (EuroVis) 2014 Volume 33 (2014), Number 3 H. Carr, P. Rheingans, and H. Schumann (Guest Editors) Extended Branch Decomposition Graphs: Structural Comparison of Scalar Data Himangshu Saikia, Hans-Peter Seidel, Tino Weinkauf Max Planck Institute for Informatics, Saarbrücken, Germany Abstract We present a method to find repeating topological structures in scalar data sets. More precisely, we compare all subtrees of two merge trees against each other – in an efficient manner exploiting redundancy. This provides pair-wise distances between the topological structures defined by sub/superlevel sets, which can be exploited in several applications such as finding similar structures in the same data set, assessing periodic behavior in time-dependent data, and comparing the topology of two different data sets. To do so, we introduce a novel data structure called the extended branch decomposition graph, which is composed of the branch decompositions of all subtrees of the merge tree. Based on dynamic programming, we provide two highly efficient algorithms for computing and comparing extended branch decomposition graphs. Several applications attest to the utility of our method and its robustness against noise. 1. Introduction • We introduce the extended branch decomposition graph: a novel data structure that describes the hierarchical decom- Structures repeat in both nature and engineering. An example position of all subtrees of a join/split tree. We abbreviate it is the symmetric arrangement of the atoms in molecules such with ‘eBDG’. as Benzene. A prime example for a periodic process is the • We provide a fast algorithm for computing an eBDG. Typ- combustion in a car engine where the gas concentration in a ical runtimes are in the order of milliseconds. -
Exploiting C-Closure in Kernelization Algorithms for Graph Problems
Exploiting c-Closure in Kernelization Algorithms for Graph Problems Tomohiro Koana Technische Universität Berlin, Algorithmics and Computational Complexity, Germany [email protected] Christian Komusiewicz Philipps-Universität Marburg, Fachbereich Mathematik und Informatik, Marburg, Germany [email protected] Frank Sommer Philipps-Universität Marburg, Fachbereich Mathematik und Informatik, Marburg, Germany [email protected] Abstract A graph is c-closed if every pair of vertices with at least c common neighbors is adjacent. The c-closure of a graph G is the smallest number such that G is c-closed. Fox et al. [ICALP ’18] defined c-closure and investigated it in the context of clique enumeration. We show that c-closure can be applied in kernelization algorithms for several classic graph problems. We show that Dominating Set admits a kernel of size kO(c), that Induced Matching admits a kernel with O(c7k8) vertices, and that Irredundant Set admits a kernel with O(c5/2k3) vertices. Our kernelization exploits the fact that c-closed graphs have polynomially-bounded Ramsey numbers, as we show. 2012 ACM Subject Classification Theory of computation → Parameterized complexity and exact algorithms; Theory of computation → Graph algorithms analysis Keywords and phrases Fixed-parameter tractability, kernelization, c-closure, Dominating Set, In- duced Matching, Irredundant Set, Ramsey numbers Funding Frank Sommer: Supported by the Deutsche Forschungsgemeinschaft (DFG), project MAGZ, KO 3669/4-1. 1 Introduction Parameterized complexity [9, 14] aims at understanding which properties of input data can be used in the design of efficient algorithms for problems that are hard in general. The properties of input data are encapsulated in the notion of a parameter, a numerical value that can be attributed to each input instance I. -
3.1 Matchings and Factors: Matchings and Covers
1 3.1 Matchings and Factors: Matchings and Covers This copyrighted material is taken from Introduction to Graph Theory, 2nd Ed., by Doug West; and is not for further distribution beyond this course. These slides will be stored in a limited-access location on an IIT server and are not for distribution or use beyond Math 454/553. 2 Matchings 3.1.1 Definition A matching in a graph G is a set of non-loop edges with no shared endpoints. The vertices incident to the edges of a matching M are saturated by M (M-saturated); the others are unsaturated (M-unsaturated). A perfect matching in a graph is a matching that saturates every vertex. perfect matching M-unsaturated M-saturated M Contains copyrighted material from Introduction to Graph Theory by Doug West, 2nd Ed. Not for distribution beyond IIT’s Math 454/553. 3 Perfect Matchings in Complete Bipartite Graphs a 1 The perfect matchings in a complete b 2 X,Y-bigraph with |X|=|Y| exactly c 3 correspond to the bijections d 4 f: X -> Y e 5 Therefore Kn,n has n! perfect f 6 matchings. g 7 Kn,n The complete graph Kn has a perfect matching iff… Contains copyrighted material from Introduction to Graph Theory by Doug West, 2nd Ed. Not for distribution beyond IIT’s Math 454/553. 4 Perfect Matchings in Complete Graphs The complete graph Kn has a perfect matching iff n is even. So instead of Kn consider K2n. We count the perfect matchings in K2n by: (1) Selecting a vertex v (e.g., with the highest label) one choice u v (2) Selecting a vertex u to match to v K2n-2 2n-1 choices (3) Selecting a perfect matching on the rest of the vertices. -
Approximation Algorithms
Lecture 21 Approximation Algorithms 21.1 Overview Suppose we are given an NP-complete problem to solve. Even though (assuming P = NP) we 6 can’t hope for a polynomial-time algorithm that always gets the best solution, can we develop polynomial-time algorithms that always produce a “pretty good” solution? In this lecture we consider such approximation algorithms, for several important problems. Specific topics in this lecture include: 2-approximation for vertex cover via greedy matchings. • 2-approximation for vertex cover via LP rounding. • Greedy O(log n) approximation for set-cover. • Approximation algorithms for MAX-SAT. • 21.2 Introduction Suppose we are given a problem for which (perhaps because it is NP-complete) we can’t hope for a fast algorithm that always gets the best solution. Can we hope for a fast algorithm that guarantees to get at least a “pretty good” solution? E.g., can we guarantee to find a solution that’s within 10% of optimal? If not that, then how about within a factor of 2 of optimal? Or, anything non-trivial? As seen in the last two lectures, the class of NP-complete problems are all equivalent in the sense that a polynomial-time algorithm to solve any one of them would imply a polynomial-time algorithm to solve all of them (and, moreover, to solve any problem in NP). However, the difficulty of getting a good approximation to these problems varies quite a bit. In this lecture we will examine several important NP-complete problems and look at to what extent we can guarantee to get approximately optimal solutions, and by what algorithms. -
‣ Dijkstra's Algorithm ‣ Minimum Spanning Trees ‣ Prim, Kruskal, Boruvka ‣ Single-Link Clustering ‣ Min-Cost Arborescences
4. GREEDY ALGORITHMS II ‣ Dijkstra's algorithm ‣ minimum spanning trees ‣ Prim, Kruskal, Boruvka ‣ single-link clustering ‣ min-cost arborescences Lecture slides by Kevin Wayne Copyright © 2005 Pearson-Addison Wesley http://www.cs.princeton.edu/~wayne/kleinberg-tardos Last updated on Feb 18, 2013 6:08 AM 4. GREEDY ALGORITHMS II ‣ Dijkstra's algorithm ‣ minimum spanning trees ‣ Prim, Kruskal, Boruvka ‣ single-link clustering ‣ min-cost arborescences SECTION 4.4 Shortest-paths problem Problem. Given a digraph G = (V, E), edge weights ℓe ≥ 0, source s ∈ V, and destination t ∈ V, find the shortest directed path from s to t. 1 15 3 5 4 12 source s 0 3 8 7 7 2 9 9 6 1 11 5 5 4 13 4 20 6 destination t length of path = 9 + 4 + 1 + 11 = 25 3 Car navigation 4 Shortest path applications ・PERT/CPM. ・Map routing. ・Seam carving. ・Robot navigation. ・Texture mapping. ・Typesetting in LaTeX. ・Urban traffic planning. ・Telemarketer operator scheduling. ・Routing of telecommunications messages. ・Network routing protocols (OSPF, BGP, RIP). ・Optimal truck routing through given traffic congestion pattern. Reference: Network Flows: Theory, Algorithms, and Applications, R. K. Ahuja, T. L. Magnanti, and J. B. Orlin, Prentice Hall, 1993. 5 Dijkstra's algorithm Greedy approach. Maintain a set of explored nodes S for which algorithm has determined the shortest path distance d(u) from s to u. ・Initialize S = { s }, d(s) = 0. ・Repeatedly choose unexplored node v which minimizes shortest path to some node u in explored part, followed by a single edge (u, v) ℓe v d(u) u S s 6 Dijkstra's algorithm Greedy approach. -
Multi-Budgeted Matchings and Matroid Intersection Via Dependent Rounding
Multi-budgeted Matchings and Matroid Intersection via Dependent Rounding Chandra Chekuri∗ Jan Vondrak´ y Rico Zenklusenz Abstract ing: given a fractional point x in a polytope P ⊂ Rn, ran- Motivated by multi-budgeted optimization and other applications, domly round x to a solution R corresponding to a vertex we consider the problem of randomly rounding a fractional solution of P . Here P captures the deterministic constraints that we x in the (non-bipartite graph) matching and matroid intersection wish the rounding to satisfy, and it is natural to assume that polytopes. We show that for any fixed δ > 0, a given point P is an integer polytope (typically a f0; 1g polytope). Of course the important issue is what properties we need R to x can be rounded to a random solution R such that E[1R] = (1 − δ)x and any linear function of x satisfies dimension-free satisfy, and this is dictated by the application at hand. A Chernoff-Hoeffding concentration bounds (the bounds depend on property that is useful in several applications is that R sat- δ and the expectation µ). We build on and adapt the swap isfies concentration properties for linear functions of x: that n rounding scheme in our recent work [9] to achieve this result. is, for any vector a 2 [0; 1] , we want the linear function P 1 Our main contribution is a non-trivial martingale based analysis a(R) = i2R ai to be concentrated around its expectation . framework to prove the desired concentration bounds. In this Ideally, we would like to have E[1R] = x, which would P paper we describe two applications. -
Converting MST to TSP Path by Branch Elimination
applied sciences Article Converting MST to TSP Path by Branch Elimination Pasi Fränti 1,2,* , Teemu Nenonen 1 and Mingchuan Yuan 2 1 School of Computing, University of Eastern Finland, 80101 Joensuu, Finland; [email protected] 2 School of Big Data & Internet, Shenzhen Technology University, Shenzhen 518118, China; [email protected] * Correspondence: [email protected].fi Abstract: Travelling salesman problem (TSP) has been widely studied for the classical closed loop variant but less attention has been paid to the open loop variant. Open loop solution has property of being also a spanning tree, although not necessarily the minimum spanning tree (MST). In this paper, we present a simple branch elimination algorithm that removes the branches from MST by cutting one link and then reconnecting the resulting subtrees via selected leaf nodes. The number of iterations equals to the number of branches (b) in the MST. Typically, b << n where n is the number of nodes. With O-Mopsi and Dots datasets, the algorithm reaches gap of 1.69% and 0.61 %, respectively. The algorithm is suitable especially for educational purposes by showing the connection between MST and TSP, but it can also serve as a quick approximation for more complex metaheuristics whose efficiency relies on quality of the initial solution. Keywords: traveling salesman problem; minimum spanning tree; open-loop TSP; Christofides 1. Introduction The classical closed loop variant of travelling salesman problem (TSP) visits all the nodes and then returns to the start node by minimizing the length of the tour. Open loop TSP is slightly different variant, which skips the return to the start node. -
CSE 421 Algorithms Warmup Dijkstra's Algorithm
Single Source Shortest Path Problem • Given a graph and a start vertex s – Determine distance of every vertex from s CSE 421 – Identify shortest paths to each vertex Algorithms • Express concisely as a “shortest paths tree” • Each vertex has a pointer to a predecessor on Richard Anderson shortest path 1 u u Dijkstra’s algorithm 1 2 3 5 s x s x 3 4 3 v v Construct Shortest Path Tree Warmup from s • If P is a shortest path from s to v, and if t is 2 d d on the path P, the segment from s to t is a a 1 5 a 4 4 shortest path between s and t 4 e e -3 c s c v -2 s t 3 3 2 s 6 g g b b •WHY? 7 3 f f Assume all edges have non-negative cost Simulate Dijkstra’s algorithm Dijkstra’s Algorithm (strarting from s) on the graph S = {}; d[s] = 0; d[v] = infinity for v != s Round Vertex sabcd While S != V Added Choose v in V-S with minimum d[v] 1 a c 1 Add v to S 1 3 2 For each w in the neighborhood of v 2 s 4 1 d[w] = min(d[w], d[v] + c(v, w)) 4 6 3 4 1 3 y b d 4 1 3 1 u 0 1 1 4 5 s x 2 2 2 2 v 2 3 z 5 Dijkstra’s Algorithm as a greedy Correctness Proof algorithm • Elements committed to the solution by • Elements in S have the correct label order of minimum distance • Key to proof: when v is added to S, it has the correct distance label. -
The Complexity of Multivariate Matching Polynomials
The Complexity of Multivariate Matching Polynomials Ilia Averbouch∗ and J.A.Makowskyy Faculty of Computer Science Israel Institute of Technology Haifa, Israel failia,[email protected] February 28, 2007 Abstract We study various versions of the univariate and multivariate matching and rook polynomials. We show that there is most general multivariate matching polynomial, which is, up the some simple substitutions and multiplication with a prefactor, the original multivariate matching polynomial introduced by C. Heilmann and E. Lieb. We follow here a line of investigation which was very successfully pursued over the years by, among others, W. Tutte, B. Bollobas and O. Riordan, and A. Sokal in studying the chromatic and the Tutte polynomial. We show here that evaluating these polynomials over the reals is ]P-hard for all points in Rk but possibly for an exception set which is semi-algebraic and of dimension strictly less than k. This result is analoguous to the characterization due to F. Jaeger, D. Vertigan and D. Welsh (1990) of the points where the Tutte polynomial is hard to evaluate. Our proof, however, builds mainly on the work by M. Dyer and C. Greenhill (2000). 1 Introduction In this paper we study generalizations of the matching and rook polynomials and their complexity. The matching polynomial was originally introduced in [5] as a multivariate polynomial. Some of its general properties, in particular the so called half-plane property, were studied recently in [2]. We follow here a line of investigation which was very successfully pursued over the years by, among others, W. Tutte [15], B. -
1 Bipartite Matching and Vertex Covers
ORF 523 Lecture 6 Princeton University Instructor: A.A. Ahmadi Scribe: G. Hall Any typos should be emailed to a a [email protected]. In this lecture, we will cover an application of LP strong duality to combinatorial optimiza- tion: • Bipartite matching • Vertex covers • K¨onig'stheorem • Totally unimodular matrices and integral polytopes. 1 Bipartite matching and vertex covers Recall that a bipartite graph G = (V; E) is a graph whose vertices can be divided into two disjoint sets such that every edge connects one node in one set to a node in the other. Definition 1 (Matching, vertex cover). A matching is a disjoint subset of edges, i.e., a subset of edges that do not share a common vertex. A vertex cover is a subset of the nodes that together touch all the edges. (a) An example of a bipartite (b) An example of a matching (c) An example of a vertex graph (dotted lines) cover (grey nodes) Figure 1: Bipartite graphs, matchings, and vertex covers 1 Lemma 1. The cardinality of any matching is less than or equal to the cardinality of any vertex cover. This is easy to see: consider any matching. Any vertex cover must have nodes that at least touch the edges in the matching. Moreover, a single node can at most cover one edge in the matching because the edges are disjoint. As it will become clear shortly, this property can also be seen as an immediate consequence of weak duality in linear programming. Theorem 1 (K¨onig). If G is bipartite, the cardinality of the maximum matching is equal to the cardinality of the minimum vertex cover. -
Minimum Spanning Trees Announcements
Lecture 15 Minimum Spanning Trees Announcements • HW5 due Friday • HW6 released Friday Last time • Greedy algorithms • Make a series of choices. • Choose this activity, then that one, .. • Never backtrack. • Show that, at each step, your choice does not rule out success. • At every step, there exists an optimal solution consistent with the choices we’ve made so far. • At the end of the day: • you’ve built only one solution, • never having ruled out success, • so your solution must be correct. Today • Greedy algorithms for Minimum Spanning Tree. • Agenda: 1. What is a Minimum Spanning Tree? 2. Short break to introduce some graph theory tools 3. Prim’s algorithm 4. Kruskal’s algorithm Minimum Spanning Tree Say we have an undirected weighted graph 8 7 B C D 4 9 2 11 4 A I 14 E 7 6 8 10 1 2 A tree is a H G F connected graph with no cycles! A spanning tree is a tree that connects all of the vertices. Minimum Spanning Tree Say we have an undirected weighted graph The cost of a This is a spanning tree is 8 7 spanning tree. the sum of the B C D weights on the edges. 4 9 2 11 4 A I 14 E 7 6 8 10 A tree is a This tree 1 2 H G F connected graph has cost 67 with no cycles! A spanning tree is a tree that connects all of the vertices. Minimum Spanning Tree Say we have an undirected weighted graph This is also a 8 7 spanning tree.