Provided for Non-Commercial Research and Educational Use. Not for Reproduction, Distribution Or Commercial Use

Total Page:16

File Type:pdf, Size:1020Kb

Provided for Non-Commercial Research and Educational Use. Not for Reproduction, Distribution Or Commercial Use Provided for non-commercial research and educational use. Not for reproduction, distribution or commercial use. This article was originally published in the Encyclopedia of Evolutionary Biology published by Elsevier, and the attached copy is provided by Elsevier for the author's benefit and for the benefit of the author's institution, for non- commercial research and educational use including without limitation use in instruction at your institution, sending it to specific colleagues who you know, and providing a copy to your institution's administrator. All other uses, reproduction and distribution, including without limitation commercial reprints, selling or licensing copies or access, or posting on open internet sites, your personal or institution's website or repository, are prohibited. For exceptions, permission may be sought for such use through Elsevier's permissions site at: http://www.elsevier.com/locate/permissionusematerial Gontier, N. (2016) Symbiosis, History of. In: Kliman, R.M. (ed.), Encyclopedia of Evolutionary Biology. vol. 4, pp. 272–281. Oxford: Academic Press. © 2016 Elsevier Inc. All rights reserved. Author's personal copy Symbiosis, History of N Gontier, University of Lisbon, Lisbon, Portugal r 2016 Elsevier Inc. All rights reserved. Glossary Transformation and metamorphosis are precursors to Deism The idea that the universe follows natural, transmutation and evolution theory. mechanical laws even though it was created by a deity. The Symbiogenesis Evolutionary mechanism that results from deity is presumed not to intervene after its original creation hereditary symbiosis. act. Deism was introduced by Natural Philosophers and is Symbiont Any organism that engages in a symbiotic foundational for nineteenth century Natural History schools. relation with one or more organisms – often used to Ecology The study of the ‘household’ of organisms, designate the smaller partner in the symbiosis. broadly conceived as including biotic and abiotic Theism The idea that a supernatural being has created the environmental interactions, often depicted in hierarchy universe and intervenes in creation at will. This belief is theories ranging from populations and species to foundational for the Semitic religions as well as early ecosystems, biomes, and biospheres. Natural Theology schools. Metamorphosis Pre-evolutionary idea that living organisms can transform, or change in form. Defining Symbiosis called Social-Contract theoreticians because they founded sociopolitical, secular thought by debating the fair and just Symbiosis refers to the phenomenon whereby two or distribution of ‘public goods’ and ‘natural resources’ across more organisms with distinct genealogical, evolutionary nations, the ‘natural’‘division of labor,’ and the ‘common histories live in close association with one another (de Bary, goods’ (shared belief states) that socially bond individual 1878, 1879). Together, the host and its symbionts form a new citizens into a ‘common wealth’ (a nation) (Gontier, 2009). biological entity that is sometimes called a superorganism Their theorizing on the ‘naturalness’ by which humans ‘live (Spencer, 1876; Carrapiço, 2015), holobiont (Margulis, 1991; together,’ and what the most righteous sociopolitical societal Guerrero et al., 2013), or symbiome (Sapp, 2003: 33); and this structure is, would come to define liberal and social thought newly formed entity is considered to be a single unit, either of and lead to the rise of the major secular sociopolitical doctrines natural selection (through its hologenome, Rosenberg et al., of the nineteenth and twentieth centuries (libertarianism, lib- 2007; Zilber-Rosenberg and Rosenberg, 2008), or of other eralism, socialism, Marxism (communism), communitarian- evolutionary mechanisms. Symbionts can be acquired both ism, national socialism, and democracy). These sociopolitical vertically (during phylogenesis) and horizontally (during ideologies were formulated by drawing idealized analogies ontogenesis). When symbiosis becomes obligate and heredi- with the animal world (often in the form of fables), which tary, it can lead to evolution by symbiogenesis (Margulis and in turn founded preliminary researches on ‘animal societies’ Dolan, 2000: 157). But even without causing symbiogenesis, that developed into naturalistic, and eventually evolutionary symbiotic associations can affect an organism's adaptation, research on biological species. reproduction and fitness, species extinction or speciation, and It is well-known that Darwin (Burrow, 1972; Barrett, 1977; symbiosis can influence ecological systems (Brucker and Bowler, 1983; Smocovitis, 1996) was inspired by: Bordenstein, 2012; Margulis, 1991; Zook, 2015). 1. Adam Smith’s liberal idea of free-market economy and his metaphor of the ‘invisible hand’; 2. Thomas Malthus’s notions of ‘scarcity of resources’ and Is Nature ‘Red in Tooth and Claw’ or ‘Social’–Origins ‘struggle for existence’; of Symbiosis Research in Natural History Research 3. Herbert Spencer and Thomas Huxley’s liberal ideas on and Its Relation to the Sociopolitical Sciences sociocultural ‘progress’; 4. Jean Baptiste Lamarck’s ideas of ‘adaptation’ and tele- Research on symbiosis originated in nineteenth century ological progress in biology; European Natural History Research. Natural History Research 5. Francis Bacon’s ‘induction theory’; marked the beginning of the modern sciences and en- 6. Charles Lyell’s ‘uniformitarianism’; and compassed the physical, biological, and cultural sciences 7. Wilhelm von Humboldt and Auguste Schleicher’s ‘natural (Gontier, 2011). Rather than adhering to ‘divine laws’ speci- genealogies’ of the Indo-European languages. fied in religious writings, utopian scholars such as Thomas More or Bernard Mandeville, and moral philosophers such as The early Darwinists did not distinguish the natural from Thomas Hobbes, Adam Smith, David Hume, and Jean-Jacques the sociocultural sciences, and their evolutionary theories Rousseau would search for ‘natural laws,’ and transition from were a natural extension of sociopolitical, liberal Hobbesian a theist to a deist worldview. These moral philosophers are thought – how the latter ideology defined the ‘natural’ 272 Encyclopedia of Evolutionary Biology, Volume 4 doi:10.1016/B978-0-12-800049-6.00015-9 Author's personal copy Symbiosis, History of 273 condition as well as the sociocultural and political life of which in turn specify the nature of the social lives of animals, humans and animals. For Hobbes (1651/2010), humans were in particular how they establish communal living and how like wolves, who in a ‘natural state’ found themselves at ‘war’ they share their food resources. In this context, he would with other humans because they wanted to defend their introduce the terms commensalism (commensaux), mutualism and individual freedom. Early Darwinists extended these ideas parasitism (Table 1). to the whole of nature and, in the words of Alfred Lord For van Beneden, Tennyson, they saw nature as ‘red in tooth and claw.’ A struggle for existence results from a scarcity of resources, When taking a closer look at the animal world, it does not take long leading to a natural selection of the fit, at the expense of the to find more than one analogy with human society. If I’m allowed to maladaptive (Huxley, 1888; Bouglé, 1909). say so, there is not one social position found in human society that is Etymological analyses of symbiosis jargon demonstrate not also found in the animal kingdom. Most of the animals live peacefully from the fruits of their labors, and exercise a profession that, prior to the introduction into biology, many of the that gives them life. But, at the sideline of these honest industrials, foundational concepts were also used to define sociocultural we also find miserable ones, who cannot do without the assistance of human relations and sociopolitical ideologies (Table 1). Early their neighbors, some of whom establish themselves as parasites in fi symbiologists, however, applied less-liberal or non-liberal, their organs, others as commensals (commensaux) that take pro t from the gains (labors) of the honest. (Van Beneden, 1875:2–3, my often socialist and communitarian language to characterize the translation) living arrangements present in the natural world – ideas that were inspired by Rousseau’s social-contract theory. Rousseau (1762/2001) understood humans as ‘good natured’ and in- Commensals or messmates are merely companions at the herently social beings that became corrupted by artificial so- table, they are allowed to dine with the host and feed on their cieties. The human family, one of the basic units of law, is neighbor’s catch. They can live inside or onside their host typified by its sharing of resources, and societal living is ideally (what we today call endo- or ectosymbiosis), and they can either characterized by reciprocal exchange and a fair (re)distribution live independently or forever remain fixed (today called fac- of natural resources. Reciprocal and altruistic social rule- ultative and obligate symbiosis). Parasites are those animals who following enables the formation of a ‘social-contract’ that in live at the expense of their neighbor, they take advantage of turn allows for the establishment of a ‘higher, common good’ their host and can endanger its life. Mutualists are animals that that founds the resurrection of the welfare state. As members live onto one another without being either parasites or mess- of the welfare state, persons become citizens that create a mates. They receive
Recommended publications
  • Aristotle's Essentialism Revisited
    University of Missouri, St. Louis IRL @ UMSL Theses Graduate Works 4-15-2013 Accommodating Species Evolution: Aristotle’s Essentialism Revisited Yin Zhang University of Missouri-St. Louis, [email protected] Follow this and additional works at: http://irl.umsl.edu/thesis Recommended Citation Zhang, Yin, "Accommodating Species Evolution: Aristotle’s Essentialism Revisited" (2013). Theses. 192. http://irl.umsl.edu/thesis/192 This Thesis is brought to you for free and open access by the Graduate Works at IRL @ UMSL. It has been accepted for inclusion in Theses by an authorized administrator of IRL @ UMSL. For more information, please contact [email protected]. Accommodating Species Evolution: Aristotle’s Essentialism Revisited by Yin Zhang B.A., Philosophy, Peking University, 2010 A Thesis Submitted to The Graduate School at the University of Missouri – St. Louis in partial fulfillment of the requirements for the degree Master of Arts in Philosophy May 2013 Advisory Committee Jon D. McGinnis, Ph.D. Chairperson Andrew G. Black, Ph.D. Berit O. Brogaard, Ph.D. Zhang, Yin, UMSL, 2013, p. i PREFACE In the fall of 2008 when I was a junior at Peking University, I attended a lecture series directed by Dr. Melville Y. Stewart on science and religion. Guest lecturers Dr. Alvin Plantinga, Dr. William L. Craig and Dr. Bruce Reichenbach have influenced my thinking on the relation between evolution and faith. In the fall of 2010 when I became a one-year visiting student at Calvin College in Michigan, I took a seminar directed by Dr. Kelly J. Clark on evolution and ethics. Having thought about evolution/faith and evolution/ethics, I signed up for Dr.
    [Show full text]
  • Plant-Microbe Symbioses: a Continuum from Commensalism to Parasitism
    UCLA UCLA Previously Published Works Title Plant-microbe symbioses: A continuum from commensalism to parasitism Permalink https://escholarship.org/uc/item/6kx779h1 Journal Symbiosis, 37(1-3) ISSN 0334-5114 Author Hirsch, Ann M. Publication Date 2004 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Symbiosis, 37 (2004) xx–xx 1 Balaban, Philadelphia/Rehovot Review article. Plant-Microbe Symbioses: A Continuum from Commensalism to Parasitism ANN M. HIRSCH Department of Molecular, Cell, and Developmental Biology and Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095-1606, USA, Tel. +1-310-206-8673, Fax. +1-310-206-5413, Email. [email protected] Received October 28, 2003; Accepted January 27, 2004 Abstract Photosynthetic organisms establish symbioses with a wide range of microorganisms. This review examines the diversity of symbiotic interactions, and proposes that there is a continuum from commensalism to mutualism to pathogenesis/parasitism in plant-microbe associations. The advantage of considering commensalism, mutualism, and pathogenesis/parasitism as a continuum rather than as discrete relationships between hosts and microbes, as they have been considered in the past, is that it will motivate us to focus more on common molecular mechanisms. Keywords: ?? 1. Introduction Plants establish mutualistic, often described as symbiotic, interactions with myriad organisms, both prokaryotic and eukaryotic. Some of the most prominent photosynthetic mutualisms are illustrated in Fig. 1. Although technically not a plant symbiosis, lichens are photosynthetic and represent an excellent example of a beneficial interaction (Fig. 1A). Presented at the 4th International Symbiosis Congress, August 17–23, 2003, Halifax, Canada 0334-5114/2004/$05.50 ©2004 Balaban 2 A.M.
    [Show full text]
  • The Fourth Perspective: Evolution and Organismal Agency
    The Fourth Perspective: Evolution and Organismal Agency Johannes Jaeger Complexity Science Hub (CSH), Vienna, Josefstädter Straße 39, 1080 Vienna Abstract This chapter examines the deep connections between biological organization, agency, and evolution by natural selection. Using Griesemer’s account of the re- producer, I argue that the basic unit of evolution is not a genetic replicator, but a complex hierarchical life cycle. Understanding the self-maintaining and self-pro- liferating properties of evolvable reproducers requires an organizational account of ontogenesis and reproduction. This leads us to an extended and disambiguated set of minimal conditions for evolution by natural selection—including revised or new principles of heredity, variation, and ontogenesis. More importantly, the con- tinuous maintenance of biological organization within and across generations im- plies that all evolvable systems are agents, or contain agents among their parts. This means that we ought to take agency seriously—to better understand the con- cept and its role in explaining biological phenomena—if we aim to obtain an or- ganismic theory of evolution in the original spirit of Darwin’s struggle for exis- tence. This kind of understanding must rely on an agential perspective on evolu- tion, complementing and succeeding existing structural, functional, and processual approaches. I sketch a tentative outline of such an agential perspective, and present a survey of methodological and conceptual challenges that will have to be overcome if we are to properly implement it. 1. Introduction There are two fundamentally different ways to interpret Darwinian evolutionary theory. Charles Darwin’s original framework grounds the process of evolution on 2 the individual’s struggle for existence (Darwin, 1859).
    [Show full text]
  • A Utumn Catalogue 2016
    Autumn Catalogue 2016 antiquariaat FORUM & ASHER Rare Books Autumn Catalogue 2016 ’t Goy-Houten 2016 autumn catalogue 2016 Extensive descriptions and images available on request. All offers are without engagement and subject to prior sale. All items in this list are complete and in good condition unless stated otherwise. Any item not agreeing with the description may be returned within one week after receipt. Prices are EURO (€). Postage and insurance are not included. VAT is charged at the standard rate to all EU customers. EU customers: please quote your VAT number when placing orders. Preferred mode of payment: in advance, wire transfer or bankcheck. Arrangements can be made for MasterCard and VisaCard. Ownership of goods does not pass to the purchaser until the price has been paid in full. General conditions of sale are those laid down in the ILAB Code of Usages and Customs, which can be viewed at: <www.ilab.org/eng/ilab/code.html>. New customers are requested to provide references when ordering. Orders can be sent to either firm. Tuurdijk 16 Tuurdijk 16 3997 ms ‘t Goy – Houten 3997 ms ‘t Goy – Houten The Netherlands The Netherlands Phone: +31 (0)30 6011955 Phone: +31 (0)30 6011955 Fax: +31 (0)30 6011813 Fax: +31 (0)30 6011813 E-mail: [email protected] E-mail: [email protected] Web: www.forumrarebooks.com Web: www.asherbooks.com front cover: no. 163 on p. 90. v 1.1 · 12 Dec 2016 p. 136: no. 230 on p. 123. inside front cover: no. 32 on p. 23. inside back cover: no.
    [Show full text]
  • Plant Viruses
    Western Plant Diagnostic Network1 First Detector News A Quarterly Pest Update for WPDN First Detectors Spring 2015 edition, volume 8, number 2 In this Issue Page 1: Editor’s Note Dear First Detectors, Pages 2 – 3: Intro to Plant Plant viruses cause many important plant diseases and are Viruses responsible for huge losses in crop production and quality in Page 4: Virus nomenclature all parts of the world. Plant viruses can spread very quickly because many are vectored by insects such as aphids and Page 5 – Most Serious World Plant Viruses & Symptoms whitefly. They are a major pest of crop production as well as major pests of home gardens. By mid-summer many fields, Pages 6 – 7: Plant Virus vineyards, orchards, and gardens will see the effects of plant Vectors viruses. The focus of this edition is the origin, discovery, taxonomy, vectors, and the effects of virus infection in Pages 7 - 10: Grapevine plants. There is also a feature article on grapevine viruses. Viruses And, as usual, there are some pest updates from the West. Page 10: Pest Alerts On June 16 – 18, the WPDN is sponsoring the second Invasive Snail and Slug workshop at UC Davis. The workshop Contact us at the WPDN Regional will be recorded and will be posted on the WPDN and NPDN Center at UC Davis: home pages. Have a great summer and here’s hoping for Phone: 530 754 2255 rain! Email: [email protected] Web: https://wpdn.org Please find the NPDN family of newsletters at: Editor: Richard W. Hoenisch @Copyright Regents of the Newsletters University of California All Rights Reserved Western Plant Diagnostic Network News Plant Viruses 2 Ag, Manitoba Photo courtesy Photo Food, and Rural Initiatives and Food, of APS Photo by Giovanni Martelli, U of byBari Giovanni Photo Grapevine Fanleaf Virus Peanut leaf with Squash Mosaic Virus tomato spotted wilt virus Viruses are infectious pathogens that are too small to be seen with a light microscope, but despite their small size they can cause chaos.
    [Show full text]
  • Phylogenetic Classification of Life
    Proc. Natl. Accad. Sci. USA Vol. 93, pp. 1071-1076, February 1996 Evolution Archaeal- eubacterial mergers in the origin of Eukarya: Phylogenetic classification of life (centriole-kinetosome DNA/Protoctista/kingdom classification/symbiogenesis/archaeprotist) LYNN MARGULIS Department of Biology, University of Massachusetts, Amherst, MA 01003-5810 Conitribluted by Lynnl Marglulis, September 15, 1995 ABSTRACT A symbiosis-based phylogeny leads to a con- these features evolved in their ancestors by inferable steps (4, sistent, useful classification system for all life. "Kingdoms" 20). rRNA gene sequences (Trichomonas, Coronympha, Giar- and "Domains" are replaced by biological names for the most dia; ref. 11) confirm these as descendants of anaerobic eu- inclusive taxa: Prokarya (bacteria) and Eukarya (symbiosis- karyotes that evolved prior to the "crown group" (12)-e.g., derived nucleated organisms). The earliest Eukarya, anaero- animals, fungi, or plants. bic mastigotes, hypothetically originated from permanent If eukaryotes began as motility symbioses between Ar- whole-cell fusion between members of Archaea (e.g., Thermo- chaea-e.g., Thermoplasma acidophilum-like and Eubacteria plasma-like organisms) and of Eubacteria (e.g., Spirochaeta- (Spirochaeta-, Spirosymplokos-, or Diplocalyx-like microbes; like organisms). Molecular biology, life-history, and fossil ref. 4) where cell-genetic integration led to the nucleus- record evidence support the reunification of bacteria as cytoskeletal system that defines eukaryotes (21)-then an Prokarya while
    [Show full text]
  • Genome Evolution of a Bee- Associated Bacterium
    Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1953 Genome evolution of a bee- associated bacterium ANDREA GARCÍA-MONTANER ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6214 ISBN 978-91-513-0986-6 UPPSALA urn:nbn:se:uu:diva-416847 2020 Dissertation presented at Uppsala University to be publicly examined in A1:111a, Biomedicinskt centrum (BMC), Husargatan 3, Uppsala, Thursday, 24 September 2020 at 09:15 for the degree of Doctor of Philosophy. The examination will be conducted in English. Faculty examiner: Professor Matthias Horn (Department of Microbial Ecology and Ecosystem Science, Division of Microbial Ecology). Abstract García-Montaner, A. 2020. Genome evolution of a bee-associated bacterium. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1953. 80 pp. Uppsala: Acta Universitatis Upsaliensis. ISBN 978-91-513-0986-6. The use of large-scale comparative genomics allows us to explore the genetic diversity and mechanisms of evolution of related organisms. This thesis has focused on the application of such approaches to study Lactobacillus kunkeei, a bacterial inhabitant of the honeybee gut. We produced 102 novel complete genomes from L. kunkeei, which were used in four large comparative studies. In the first study, 41 bacterial strains were isolated from the crop of honeybees whose populations were geographically isolated. Their genome sequences revealed differences in gene contents, including the mobilome, which were mostly phylogroup- specific. However, differences in strain diversity and co-occurrence between both locations were observed. In the second study, we obtained 61 bacterial isolates from neighboring hives at different timepoints during the summer.
    [Show full text]
  • Coming to Terms with a Field: Words and Concepts in Symbiosis
    Symbiosis, 14 (1992) 17-31 17 Balaban, Philadelphia/Rehovot Review article Coming to Terms with a Field: Words and Concepts in Symbiosis MARY BETH SAFFO Institute of Marine Sciences, University of California Santa Cruz, CA 95064, USA Tel. ( 408) 459 4997, Fax ( 408) 459 4882 Received March 29, 1992; Accepted May 5, 1992 Abstract More than a century after de Bary (1879) adopted the term symbiosis, biolo• gists still disagree about the word's meaning. Many researchers define symbiosis in the sense of de Bary, as an intimate, outcome-independent interaction between species; others use symbiosis as a synonym for mutualistic or non-parasitic as• sociations. This varied usage arises in part from the absence of a language for describing both symbiotic and non-symbiotic mutualistic interactions; the complexity of many "mutualistic" endosymbiosesposes a particular descriptive difficulty. Expropriation of "symbiosis" to identify these mutualistic associa• tions is an understandable, but ultimately confusing, and conceptually limiting solution to this problem. Retention of the broad, outcome-independent sense of symbiosis is urged. Alternate terms, including chronic endosymbiosis, are proposed for apparently benign symbioses which are too poorly known, or too complex, to categorize comfortably as "mutualistic." In addition to outcome-independent investigations of symbiotic phenomena, questions of the evolutionary significance of symbioses are difficult, but im• portant problems. Thus, terms which address particular outcomes for host or symbiont - e.g., parasitism, commensalism and mutualism, "costs," "bene• fits," fitness, and related terms - also have a place in the language of symbiosis research. 0334-5114/92 /$03.50 ©1992 Balaban 18 M.B. SAFFO Habits of language ..
    [Show full text]
  • Marine Microbiology at Scripps
    81832_Ocean 8/28/03 7:18 PM Page 67 Special Issue—Scripps Centennial Marine Microbiology at Scripps A. Aristides Yayanos Scripps Institution of Oceanography, University of California, • San Diego, California USA Marine microbiology is the study of the smallest isolated marine bioluminescent bacteria, isolated and organisms found in the oceans—bacteria and archaea, characterized sulfate-reducing bacteria, and showed many eukaryotes (among the protozoa, fungi, and denitrifying bacteria could both produce and consume plants), and viruses. Most microorganisms can be seen nitrous oxide, now known to be an important green- only with a microscope. Microbes pervade the oceans, house gas. Beijerinck also founded the field of virology its sediments, and some hydrothermal fluids and through his work on plant viruses (van Iterson et al., exhibit solitary life styles as well as complex relation- 1983). Mills (1989) describes the significance of the ships with animals, other microorganisms, and each work of Beijerink and Winogradsky to plankton other. The skeletal remains of microorganisms form the research and marine chemistry. largest component of sedimentary fossils whose study Around 1903, bacteriology in California was reveals Earth’s history. The enormous morphological, emerging in the areas of medicine and public health physiological, and taxonomic diversity of marine and accordingly was developing into an academic dis- microorganisms remains far from adequately cipline in medical schools (McClung and Meyer, 1974). described and studied. Because the sea receives terres- Whereas the branch of microbiology dealing with bac- trial microorganisms from rivers, sewage outfalls, and teria and viruses was just beginning, the branch con- other sources, marine microbiology also includes the cerning protozoa and algae was a relatively more estab- study of alien microorganisms.
    [Show full text]
  • Ernst Haeckel and the Morphology of Ethics Nolan Hele
    Document généré le 26 sept. 2021 19:41 Journal of the Canadian Historical Association Revue de la Société historique du Canada Ernst Haeckel and the Morphology of Ethics Nolan Hele Volume 15, numéro 1, 2004 URI : https://id.erudit.org/iderudit/012066ar DOI : https://doi.org/10.7202/012066ar Aller au sommaire du numéro Éditeur(s) The Canadian Historical Association/La Société historique du Canada ISSN 0847-4478 (imprimé) 1712-6274 (numérique) Découvrir la revue Citer cet article Hele, N. (2004). Ernst Haeckel and the Morphology of Ethics. Journal of the Canadian Historical Association / Revue de la Société historique du Canada, 15(1), 1–27. https://doi.org/10.7202/012066ar Tous droits réservés © The Canadian Historical Association/La Société Ce document est protégé par la loi sur le droit d’auteur. L’utilisation des historique du Canada, 2004 services d’Érudit (y compris la reproduction) est assujettie à sa politique d’utilisation que vous pouvez consulter en ligne. https://apropos.erudit.org/fr/usagers/politique-dutilisation/ Cet article est diffusé et préservé par Érudit. Érudit est un consortium interuniversitaire sans but lucratif composé de l’Université de Montréal, l’Université Laval et l’Université du Québec à Montréal. Il a pour mission la promotion et la valorisation de la recherche. https://www.erudit.org/fr/ chajournal2004.qxd 12/01/06 14:11 Page 1 Ernst Haeckel and the Morphology of Ethics NOLAN HEIE n 10 May 1907, Johannes Reinke,1 a Professor of botany at the University Oof Kiel and member of the Prussian upper chamber, the
    [Show full text]
  • A Realism-Based Approach to an Ontological Representation of Symbiotic Interactions Matthew Diller1* , Evan Johnson1, Amanda Hicks2 and William R
    Diller et al. BMC Medical Informatics and Decision Making (2020) 20:258 https://doi.org/10.1186/s12911-020-01273-0 RESEARCH ARTICLE Open Access A realism-based approach to an ontological representation of symbiotic interactions Matthew Diller1* , Evan Johnson1, Amanda Hicks2 and William R. Hogan1 Abstract Background: The symbiotic interactions that occur between humans and organisms in our environment have a tremendous impact on our health. Recently, there has been a surge in interest in understanding the complex relationships between the microbiome and human health and host immunity against microbial pathogens, among other things. To collect and manage data about these interactions and their complexity, scientists will need ontologies that represent symbiotic interactions as they occur in reality. Methods: We began with two papers that reviewed the usage of ‘symbiosis’ and related terms in the biology and ecology literature and prominent textbooks. We then analyzed several prominent standard terminologies and ontologies that contain representations of symbiotic interactions, to determine if they appropriately defined ‘symbiosis’ and related terms according to current scientific usage as identified by the review papers. In the process, we identified several subtypes of symbiotic interactions, as well as the characteristics that differentiate them, which we used to propose textual and axiomatic definitions for each subtype of interaction. To both illustrate how to use the ontological representations and definitions we created and provide additional quality assurance on key definitions, we carried out a referent tracking analysis and representation of three scenarios involving symbiotic interactions among organisms. Results: We found one definition of ‘symbiosis’ in an existing ontology that was consistent with the vast preponderance of scientific usage in biology and ecology.
    [Show full text]
  • Reticulate Evolution Everywhere
    Reticulate Evolution Everywhere Nathalie Gontier Abstract Reticulation is a recurring evolutionary pattern found in phylogenetic reconstructions of life. The pattern results from how species interact and evolve by mechanisms and processes including symbiosis; symbiogenesis; lateral gene transfer (that occurs via bacterial conjugation, transformation, transduction, Gene Transfer Agents, or the movements of transposons, retrotransposons, and other mobile genetic elements); hybridization or divergence with gene flow; and infec- tious heredity (induced either directly by bacteria, bacteriophages, viruses, pri- ons, protozoa and fungi, or via vectors that transmit these pathogens). Research on reticulate evolution today takes on inter- and transdisciplinary proportions and is able to unite distinct research fields ranging from microbiology and molecular genetics to evolutionary biology and the biomedical sciences. This chapter sum- marizes the main principles of the diverse reticulate evolutionary mechanisms and situates them into the chapters that make up this volume. Keywords Reticulate evolution · Symbiosis · Symbiogenesis · Lateral Gene Transfer · Infectious agents · Microbiome · Viriome · Virolution · Hybridization · Divergence with gene flow · Evolutionary patterns · Extended Synthesis 1 Reticulate Evolution: Patterns, Processes, Mechanisms According to the Online Etymology Dictionary (http://www.etymonline.com), the word reticulate is an adjective that stems from the Latin words “re¯ticulātus” (having a net-like pattern) and re¯ticulum (little net). When scholars identify the evolution of life as being “reticulated,” they first and foremost refer to a recurring evolutionary pattern. N. Gontier (*) AppEEL—Applied Evolutionary Epistemology Lab, University of Lisbon, Lisbon, Portugal e-mail: [email protected] © Springer International Publishing Switzerland 2015 1 N. Gontier (ed.), Reticulate Evolution, Interdisciplinary Evolution Research 3, DOI 10.1007/978-3-319-16345-1_1 2 N.
    [Show full text]