Intracellular Redox-Modulated Pathways As Targets for Effective Approaches in the Treatment of Viral Infection
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Zinc and Copper Ions Differentially Regulate Prion-Like Phase
viruses Article Zinc and Copper Ions Differentially Regulate Prion-Like Phase Separation Dynamics of Pan-Virus Nucleocapsid Biomolecular Condensates Anne Monette 1,* and Andrew J. Mouland 1,2,* 1 Lady Davis Institute at the Jewish General Hospital, Montréal, QC H3T 1E2, Canada 2 Department of Medicine, McGill University, Montréal, QC H4A 3J1, Canada * Correspondence: [email protected] (A.M.); [email protected] (A.J.M.) Received: 2 September 2020; Accepted: 12 October 2020; Published: 18 October 2020 Abstract: Liquid-liquid phase separation (LLPS) is a rapidly growing research focus due to numerous demonstrations that many cellular proteins phase-separate to form biomolecular condensates (BMCs) that nucleate membraneless organelles (MLOs). A growing repertoire of mechanisms supporting BMC formation, composition, dynamics, and functions are becoming elucidated. BMCs are now appreciated as required for several steps of gene regulation, while their deregulation promotes pathological aggregates, such as stress granules (SGs) and insoluble irreversible plaques that are hallmarks of neurodegenerative diseases. Treatment of BMC-related diseases will greatly benefit from identification of therapeutics preventing pathological aggregates while sparing BMCs required for cellular functions. Numerous viruses that block SG assembly also utilize or engineer BMCs for their replication. While BMC formation first depends on prion-like disordered protein domains (PrLDs), metal ion-controlled RNA-binding domains (RBDs) also orchestrate their formation. Virus replication and viral genomic RNA (vRNA) packaging dynamics involving nucleocapsid (NC) proteins and their orthologs rely on Zinc (Zn) availability, while virus morphology and infectivity are negatively influenced by excess Copper (Cu). While virus infections modify physiological metal homeostasis towards an increased copper to zinc ratio (Cu/Zn), how and why they do this remains elusive. -
An ER Stress/Defective Unfolded Protein Response Model Richard T
ORIGINAL RESEARCH Ethanol Induced Disordering of Pancreatic Acinar Cell Endoplasmic Reticulum: An ER Stress/Defective Unfolded Protein Response Model Richard T. Waldron,1,2 Hsin-Yuan Su,1 Honit Piplani,1 Joseph Capri,3 Whitaker Cohn,3 Julian P. Whitelegge,3 Kym F. Faull,3 Sugunadevi Sakkiah,1 Ravinder Abrol,1 Wei Yang,1 Bo Zhou,1 Michael R. Freeman,1,2 Stephen J. Pandol,1,2 and Aurelia Lugea1,2 1Department of Medicine, Cedars Sinai Medical Center, Los Angeles, California; 2Department of Medicine, or 3Psychiatry and Biobehavioral Sciences, University of California Los Angeles David Geffen School of Medicine, Los Angeles, California Pancreatic acinar cells Pancreatic acinar cells - no pathology - - Pathology - Ethanol feeding ER sXBP1 Pdi, Grp78… (adaptive UPR) aggregates Proper folding and secretion • disordered ER of proteins processed in the • impaired redox folding endoplasmic reticulum (ER) • ER protein aggregation • secretory defects SUMMARY METHODS: Wild-type and Xbp1þ/- mice were fed control and ethanol diets, then tissues were homogenized and fraction- Heavy alcohol consumption is associated with pancreas ated. ER proteins were labeled with a cysteine-reactive probe, damage, but light drinking shows the opposite effects, isotope-coded affinity tag to obtain a novel pancreatic redox ER reinforcing proteostasis through the unfolded protein proteome. Specific labeling of active serine hydrolases in ER with response orchestrated by X-box binding protein 1. Here, fluorophosphonate desthiobiotin also was characterized pro- ethanol-induced changes in endoplasmic reticulum protein teomically. Protein structural perturbation by redox changes redox and structure/function emerge from an unfolded was evaluated further in molecular dynamic simulations. protein response–deficient genetic model. -
Original Article PDIA3 Knockdown in Dendritic Cells Regulates IL-4 Dependent Mast Cell Degranulation
Int J Clin Exp Med 2019;12(7):8482-8491 www.ijcem.com /ISSN:1940-5901/IJCEM0089109 Original Article PDIA3 knockdown in dendritic cells regulates IL-4 dependent mast cell degranulation Liyuan Tao1,2, Yue Hu1,3, Bin Lv1,3, Lu Zhang1,3, Zhaomeng Zhuang1,3, Meng Li1,3 1Department of Gastroenterology, First Affiliated Hospital of Zhejiang Chinese Medical University, 54 Youdian Road, Hangzhou 310006, China; 2Department of Gastroenterology and Hepatology, Hangzhou Red Cross Hospital, 208 Huancheng Dong Road, Hangzhou 310003, China; 3Key Laboratory of Digestive Pathophysiology of Zhejiang Province, First Affiliated Hospital of Zhejiang Chinese Medical University, 54 Youdian Road, Hangzhou 310006, China Received November 28, 2018; Accepted March 13, 2019; Epub July 15, 2019; Published July 30, 2019 Abstract: Background: A previous study found that expression of protein disulfide isomerase A3 (PDIA3) in den- dritic cells (DCs) is a potential mediator of exaggerated intestinal mucosal immunity response in a rodent model of irritable bowel syndrome (IBS). Aim: The aim of this study was to explore the roles of PDIA3 in the interaction between DCs and mast cells (MCs) in the context of IBS. Methods: This study investigated the effects of shRNA- mediated knockdown of PDIA3 expression in a dendritic cell line and spleen lymphocyte co-cultures. Resultant co-culture supernatants were used to challenge MC. PDIA3 expression was assessed using q-PCR and Western blotting. Expression of surface markers was analyzed by flow cytometry. CD4+ and CD8+ T-cell proliferation were examined using Cell Trace CFSE kits. Cytokine production was determined by ELISA testing. MC viability was ascer- tained using CCK-8 production. -
How Influenza Virus Uses Host Cell Pathways During Uncoating
cells Review How Influenza Virus Uses Host Cell Pathways during Uncoating Etori Aguiar Moreira 1 , Yohei Yamauchi 2 and Patrick Matthias 1,3,* 1 Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland; [email protected] 2 Faculty of Life Sciences, School of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, UK; [email protected] 3 Faculty of Sciences, University of Basel, 4031 Basel, Switzerland * Correspondence: [email protected] Abstract: Influenza is a zoonotic respiratory disease of major public health interest due to its pan- demic potential, and a threat to animals and the human population. The influenza A virus genome consists of eight single-stranded RNA segments sequestered within a protein capsid and a lipid bilayer envelope. During host cell entry, cellular cues contribute to viral conformational changes that promote critical events such as fusion with late endosomes, capsid uncoating and viral genome release into the cytosol. In this focused review, we concisely describe the virus infection cycle and highlight the recent findings of host cell pathways and cytosolic proteins that assist influenza uncoating during host cell entry. Keywords: influenza; capsid uncoating; HDAC6; ubiquitin; EPS8; TNPO1; pandemic; M1; virus– host interaction Citation: Moreira, E.A.; Yamauchi, Y.; Matthias, P. How Influenza Virus Uses Host Cell Pathways during 1. Introduction Uncoating. Cells 2021, 10, 1722. Viruses are microscopic parasites that, unable to self-replicate, subvert a host cell https://doi.org/10.3390/ for their replication and propagation. Despite their apparent simplicity, they can cause cells10071722 severe diseases and even pose pandemic threats [1–3]. -
Structural Organization of a Filamentous Influenza a Virus
Structural organization of a filamentous influenza A virus Lesley J. Calder, Sebastian Wasilewski, John A. Berriman1, and Peter B. Rosenthal2 Division of Physical Biochemistry, MRC National Institute for Medical Research, London NW7 1AA, United Kingdom Edited* by Robert A. Lamb, Northwestern University, Evanston, IL, and approved April 27, 2010 (received for review February 26, 2010) Influenza is a lipid-enveloped, pleomorphic virus. We combine electron HA trimer in the neutral pH conformation (9), proteolytic frag- cryotomography and analysis of images of frozen-hydrated virions ments of the HA in the low pH conformation (10, 11), and the NA to determine the structural organization of filamentous influenza A tetramer (12, 13) have provided a molecular understanding of the virus. Influenza A/Udorn/72 virions are capsule-shaped or filamentous function of these proteins. particles of highly uniform diameter. We show that the matrix layer Further understanding of the virus life cycle requires 3D studies adjacent to the membrane is an ordered helix of the M1 protein and its of ultrastructure that can identify the specific molecular inter- close interaction with the surrounding envelope determines virion actions that govern virus self-assembly. In addition, ultrastructural morphology. The ribonucleoprotein particles (RNPs) that package the changes that are essential to membrane fusion and virion disas- genome segments form a tapered assembly at one end of the virus sembly during cell entry remain to be described. Electron cry- interior. The neuraminidase, which is present in smaller numbers than omicroscopy of influenza virions that are vitrified by rapid plunge- the hemagglutinin, clusters in patches and are typically present at the freezing (14–17) shows contrast from virion structures themselves end of the virion opposite to RNP attachment. -
Inhibitor for Protein Disulfide‑Isomerase Family a Member 3
ONCOLOGY LETTERS 21: 28, 2021 Inhibitor for protein disulfide‑isomerase family A member 3 enhances the antiproliferative effect of inhibitor for mechanistic target of rapamycin in liver cancer: An in vitro study on combination treatment with everolimus and 16F16 YOHEI KANEYA1,2, HIDEYUKI TAKATA2, RYUICHI WADA1,3, SHOKO KURE1,3, KOUSUKE ISHINO1, MITSUHIRO KUDO1, RYOTA KONDO2, NOBUHIKO TANIAI4, RYUJI OHASHI1,3, HIROSHI YOSHIDA2 and ZENYA NAITO1,3 Departments of 1Integrated Diagnostic Pathology, and 2Gastrointestinal and Hepato‑Biliary‑Pancreatic Surgery, Nippon Medical School; 3Department of Diagnostic Pathology, Nippon Medical School Hospital, Tokyo 113‑8602; 4Department of Gastrointestinal and Hepato‑Biliary‑Pancreatic Surgery, Nippon Medical School Musashi Kosugi Hospital, Tokyo 211‑8533, Japan Received April 16, 2020; Accepted October 28, 2020 DOI: 10.3892/ol.2020.12289 Abstract. mTOR is involved in the proliferation of liver 90.2±10.8% by 16F16 but to 62.3±12.2% by combination treat‑ cancer. However, the clinical benefit of treatment with mTOR ment with Ev and 16F16. HuH‑6 cells were resistant to Ev, and inhibitors for liver cancer is controversial. Protein disulfide proliferation was reduced to 86.7±6.1% by Ev and 86.6±4.8% isomerase A member 3 (PDIA3) is a chaperone protein, and by 16F16. However, combination treatment suppressed prolif‑ it supports the assembly of mTOR complex 1 (mTORC1) and eration to 57.7±4.0%. Phosphorylation of S6K was reduced by stabilizes signaling. Inhibition of PDIA3 function by a small Ev in both Li‑7 and HuH‑6 cells. Phosphorylation of 4E‑BP1 molecule known as 16F16 may destabilize mTORC1 and was reduced by combination treatment in both Li‑7 and HuH‑6 enhance the effect of the mTOR inhibitor everolimus (Ev). -
Protein Disulfide-Isomerase A3 Significantly Reduces Ischemia
Neurochemistry International 122 (2019) 19–30 Contents lists available at ScienceDirect Neurochemistry International journal homepage: www.elsevier.com/locate/neuint Protein disulfide-isomerase A3 significantly reduces ischemia-induced damage by reducing oxidative and endoplasmic reticulum stress T Dae Young Yooa,b,1, Su Bin Choc,1, Hyo Young Junga, Woosuk Kima, Kwon Young Leed, Jong Whi Kima, Seung Myung Moone,f, Moo-Ho Wong, Jung Hoon Choid, Yeo Sung Yoona, ∗ ∗∗ Dae Won Kimh, Soo Young Choic, , In Koo Hwanga, a Department of Anatomy and Cell Biology, College of Veterinary Medicine, Research Institute for Veterinary Science, Seoul National University, Seoul, 08826, South Korea b Department of Anatomy, College of Medicine, Soonchunhyang University, Cheonan, Chungcheongnam, 31151, South Korea c Department of Biomedical Sciences, Research Institute for Bioscience and Biotechnology, Hallym University, Chuncheon, 24252, South Korea d Department of Anatomy, College of Veterinary Medicine and Institute of Veterinary Science, Kangwon National University, Chuncheon, 24341, South Korea e Department of Neurosurgery, Dongtan Sacred Heart Hospital, College of Medicine, Hallym University, Hwaseong, 18450, South Korea f Research Institute for Complementary & Alternative Medicine, Hallym University, Chuncheon, 24253, South Korea g Department of Neurobiology, School of Medicine, Kangwon National University, Chuncheon, 24341, South Korea h Department of Biochemistry and Molecular Biology, Research Institute of Oral Sciences, College of Dentistry, Gangneung-Wonju -
Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in -
Orlistat, a Novel Potent Antitumor Agent for Ovarian Cancer: Proteomic Analysis of Ovarian Cancer Cells Treated with Orlistat
INTERNATIONAL JOURNAL OF ONCOLOGY 41: 523-532, 2012 Orlistat, a novel potent antitumor agent for ovarian cancer: proteomic analysis of ovarian cancer cells treated with Orlistat HUI-QIONG HUANG1*, JING TANG1*, SHENG-TAO ZHOU1, TAO YI1, HONG-LING PENG1, GUO-BO SHEN2, NA XIE2, KAI HUANG2, TAO YANG2, JIN-HUA WU2, CAN-HUA HUANG2, YU-QUAN WEI2 and XIA ZHAO1,2 1Gynecological Oncology of Biotherapy Laboratory, Department of Gynecology and Obstetrics, West China Second Hospital, Sichuan University, Chengdu, Sichuan; 2State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Chengdu, Sichuan, P.R. China Received February 9, 2012; Accepted March 19, 2012 DOI: 10.3892/ijo.2012.1465 Abstract. Orlistat is an orally administered anti-obesity drug larly PKM2. These changes confirmed our hypothesis that that has shown significant antitumor activity in a variety of Orlistat is a potential inhibitor of ovarian cancer and can be tumor cells. To identify the proteins involved in its antitumor used as a novel adjuvant antitumor agent. activity, we employed a proteomic approach to reveal protein expression changes in the human ovarian cancer cell line Introduction SKOV3, following Orlistat treatment. Protein expression profiles were analyzed by 2-dimensional polyacrylamide In the 1920s, the Nobel Prize winner Otto Warburg observed gel electrophoresis (2-DE) and protein identification was a marked increase in glycolysis and enhanced lactate produc- performed on a MALDI-Q-TOF MS/MS instrument. More tion in tumor cells even when maintained in conditions of high than 110 differentially expressed proteins were visualized oxygen tension (termed Warburg effect), leading to widespread by 2-DE and Coomassie brilliant blue staining. -
Monoamine Oxidase a Is Highly Expressed by the Human Corpus Luteum of Pregnancy
REPRODUCTIONRESEARCH Identification and characterization of an oocyte factor required for sperm decondensation in pig Jingyu Li*, Yanjun Huan1,*, Bingteng Xie, Jiaqiang Wang, Yanhua Zhao, Mingxia Jiao, Tianqing Huang, Qingran Kong and Zhonghua Liu Laboratory of Embryo Biotechnology, College of Life Science, Northeast Agricultural University, Harbin, Heilongjiang Province 150030, China and 1Shandong Academy of Agricultural Sciences, Dairy Cattle Research Center, Jinan, Shandong Province 250100, China Correspondence should be addressed to Z Liu; Email: [email protected] or to Q Kong; Email: [email protected] *(J Li and Y Huan contributed equally to this work) Abstract Mammalian oocytes possess factors to support fertilization and embryonic development, but knowledge on these oocyte-specific factors is limited. In the current study, we demonstrated that porcine oocytes with the first polar body collected at 33 h of in vitro maturation sustain IVF with higher sperm decondensation and pronuclear formation rates and support in vitro development with higher cleavage and blastocyst rates, compared with those collected at 42 h (P!0.05). Proteomic analysis performed to clarify the mechanisms underlying the differences in developmental competence between oocytes collected at 33 and 42 h led to the identification of 18 differentially expressed proteins, among which protein disulfide isomerase associated 3 (PDIA3) was selected for further study. Inhibition of maternal PDIA3 via antibody injection disrupted sperm decondensation; conversely, overexpression of PDIA3 in oocytes improved sperm decondensation. In addition, sperm decondensation failure in PDIA3 antibody-injected oocytes was rescued by dithiothreitol, a commonly used disulfide bond reducer. Our results collectively report that maternal PDIA3 plays a crucial role in sperm decondensation by reducing protamine disulfide bonds in porcine oocytes, supporting its utility as a potential tool for oocyte selection in assisted reproduction techniques. -
APICAL M2 PROTEIN IS REQUIRED for EFFICIENT INFLUENZA a VIRUS REPLICATION by Nicholas Wohlgemuth a Dissertation Submitted To
APICAL M2 PROTEIN IS REQUIRED FOR EFFICIENT INFLUENZA A VIRUS REPLICATION by Nicholas Wohlgemuth A dissertation submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland October, 2017 © Nicholas Wohlgemuth 2017 All rights reserved ABSTRACT Influenza virus infections are a major public health burden around the world. This dissertation examines the influenza A virus M2 protein and how it can contribute to a better understanding of influenza virus biology and improve vaccination strategies. M2 is a member of the viroporin class of virus proteins characterized by their predicted ion channel activity. While traditionally studied only for their ion channel activities, viroporins frequently contain long cytoplasmic tails that play important roles in virus replication and disruption of cellular function. The currently licensed live, attenuated influenza vaccine (LAIV) contains a mutation in the M segment coding sequence of the backbone virus which confers a missense mutation (alanine to serine) in the M2 gene at amino acid position 86. Previously discounted for not showing a phenotype in immortalized cell lines, this mutation contributes to both the attenuation and temperature sensitivity phenotypes of LAIV in primary human nasal epithelial cells. Furthermore, viruses encoding serine at M2 position 86 induced greater IFN-λ responses at early times post infection. Reversing mutations such as this, and otherwise altering LAIV’s ability to replicate in vivo, could result in an improved LAIV development strategy. Influenza viruses infect at and egress from the apical plasma membrane of airway epithelial cells. Accordingly, the virus transmembrane proteins, HA, NA, and M2, are all targeted to the apical plasma membrane ii and contribute to egress. -
Testing the Interaction of Flavonoids with Protein Disulfide Isomerase PDIA3 and the Effects on Protein Biological Properties
Testing the interaction of flavonoids with protein disulfide isomerase PDIA3 and the effects on protein biological properties Kanski, Ines Master's thesis / Diplomski rad 2015 Degree Grantor / Ustanova koja je dodijelila akademski / stručni stupanj: University of Zagreb, Faculty of Pharmacy and Biochemistry / Sveučilište u Zagrebu, Farmaceutsko- biokemijski fakultet Permanent link / Trajna poveznica: https://urn.nsk.hr/urn:nbn:hr:163:378527 Rights / Prava: In copyright Download date / Datum preuzimanja: 2021-10-04 Repository / Repozitorij: Repository of Faculty of Pharmacy and Biochemistry University of Zagreb Ines Kanski Testing the interaction of flavonoids with protein disulfide isomerase PDIA3 and the effects on protein biological properties DIPLOMA THESIS University of Zagreb, Faculty of Pharmacy and Biochemistry Zagreb, 2015. This thesis has been registered for the Molecular Biology with Genetic Engineering course and submitted to the University of Zagreb, Faculty of Pharmacy and Biochemistry. The experimental work was conducted at the Department of Biochemical Sciences at Sapienza University of Rome, under the expert guidance of Full Professor Fabio Altieri, Ph.D. and supervision of Assistant Professor Olga Gornik, Ph.D. I would like to thank my mentor Assistant Professor Olga Gornik, Ph.D. for taking time and helping me write this thesis. Also, I would like to express my deep gratitude to my Italian co- mentor Full Professor Fabio Altieri, Ph.D. for accepting me in his laboratory as well as for his professional and valuable advices, patience, compliance and assistance. I would like to thank my Italian colleagues for giving me warm welcome and making great working atmsphere. I wish to give special and endless thank to my parents for supporting me in all my decisions and during the overall education.