An ER Stress/Defective Unfolded Protein Response Model Richard T
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Bran Serine Hydrolases Achintya Kumar Dolui1,2, Arun Kumar Vijayakumar2,3, Ram Rajasekharan1,2,4 & Panneerselvam Vijayaraj1,2*
www.nature.com/scientificreports OPEN Activity‑based protein profling of rice (Oryza sativa L.) bran serine hydrolases Achintya Kumar Dolui1,2, Arun Kumar Vijayakumar2,3, Ram Rajasekharan1,2,4 & Panneerselvam Vijayaraj1,2* Rice bran is an underutilized agricultural by‑product with economic importance. The unique phytochemicals and fatty acid compositions of bran have been targeted for nutraceutical development. The endogenous lipases and hydrolases are responsible for the rapid deterioration of rice bran. Hence, we attempted to provide the frst comprehensive profling of active serine hydrolases (SHs) present in rice bran proteome by activity‑based protein profling (ABPP) strategy. The active site‑directed fuorophosphonate probe (rhodamine and biotin‑conjugated) was used for the detection and identifcation of active SHs. ABPP revealed 55 uncharacterized active‑SHs and are representing fve diferent known enzyme families. Based on motif and domain analyses, one of the uncharacterized and miss annotated SHs (Os12Ssp, storage protein) was selected for biochemical characterization by overexpressing in yeast. The purifed recombinant protein authenticated the serine protease activity in time and protein‑dependent studies. Os12Ssp exhibited the maximum activity at a pH between 7.0 and 8.0. The protease activity was inhibited by the covalent serine protease inhibitor, which suggests that the ABPP approach is indeed reliable than the sequence‑based annotations. Collectively, the comprehensive knowledge generated from this study would be useful in expanding the current understanding of rice bran SHs and paves the way for better utilization/ stabilization of rice bran. Rice (Oryza sativa) is one of the major staple foods for almost half the world’s population, especially in Asia 1. -
Catalysis by Acetylcholinesterase
Proc. Nat. Acad. Sci. USA Vol. 72, No. 10, pp. 3834-38, October 1975 Biochemistry Catalysis by acetylcholinesterase: Evidence that the rate-limiting step for acylation with certain substrates precedes general acid-base catalysis (enzyme mechanism/diffusion control/induced-fit conformational change/pH dependence/deuterium oxide isotope effects) TERRONE L. ROSENBERRY Departments of Biochemistry and Neurology, College of Physicians and Surgeons, Columbia University, New York, N.Y. 10032 Communicated by David Nachmansohn, June 9,1975 ABSTRACT Inferences about the catalytic mechanism of The proposed intermediates include the initial Michaelis acetylcholinesterase (acetyicholine hydrolase, EC 3.1.1.7) are complex E-RX and the acyl enzyme ER, for which evidence frequently made on the basis of a presumed analogy with has long been obtained (5, 6, 1). The pH dependence of sub- chymotrypsin, EC 3.4.21.1. Although both enzymes are serine hydrolases, several differences in the steady-state kinetic strate hydrolysis for chymotrypsin and other serine hydro- properties of the two have been observed. In this report par- lases suggests general acid-base catalysis by a group in the ticujar attention is focused on the second-order reaction con- free enzyme with a pKai of 6 to 7. Furthermore, Hammett stant, kcat/KapD While the reported pH dependence and deu- relationships with positive rho values are found with chymo- terium oxide isotope effect associated with this parameter trypsin both for deacylation (7) and acylation (8) reactions for chymotrypsin are generally consistent with simple mod- and indicate rate-limiting general base catalysis. Deacyla- els involving rate-limiting general acid-base catalysis, this study finds a more complicated situation with acetylcholi- tion rates are typically reduced in deuterium oxide by fac- nesterase. -
Original Article PDIA3 Knockdown in Dendritic Cells Regulates IL-4 Dependent Mast Cell Degranulation
Int J Clin Exp Med 2019;12(7):8482-8491 www.ijcem.com /ISSN:1940-5901/IJCEM0089109 Original Article PDIA3 knockdown in dendritic cells regulates IL-4 dependent mast cell degranulation Liyuan Tao1,2, Yue Hu1,3, Bin Lv1,3, Lu Zhang1,3, Zhaomeng Zhuang1,3, Meng Li1,3 1Department of Gastroenterology, First Affiliated Hospital of Zhejiang Chinese Medical University, 54 Youdian Road, Hangzhou 310006, China; 2Department of Gastroenterology and Hepatology, Hangzhou Red Cross Hospital, 208 Huancheng Dong Road, Hangzhou 310003, China; 3Key Laboratory of Digestive Pathophysiology of Zhejiang Province, First Affiliated Hospital of Zhejiang Chinese Medical University, 54 Youdian Road, Hangzhou 310006, China Received November 28, 2018; Accepted March 13, 2019; Epub July 15, 2019; Published July 30, 2019 Abstract: Background: A previous study found that expression of protein disulfide isomerase A3 (PDIA3) in den- dritic cells (DCs) is a potential mediator of exaggerated intestinal mucosal immunity response in a rodent model of irritable bowel syndrome (IBS). Aim: The aim of this study was to explore the roles of PDIA3 in the interaction between DCs and mast cells (MCs) in the context of IBS. Methods: This study investigated the effects of shRNA- mediated knockdown of PDIA3 expression in a dendritic cell line and spleen lymphocyte co-cultures. Resultant co-culture supernatants were used to challenge MC. PDIA3 expression was assessed using q-PCR and Western blotting. Expression of surface markers was analyzed by flow cytometry. CD4+ and CD8+ T-cell proliferation were examined using Cell Trace CFSE kits. Cytokine production was determined by ELISA testing. MC viability was ascer- tained using CCK-8 production. -
Inhibitor for Protein Disulfide‑Isomerase Family a Member 3
ONCOLOGY LETTERS 21: 28, 2021 Inhibitor for protein disulfide‑isomerase family A member 3 enhances the antiproliferative effect of inhibitor for mechanistic target of rapamycin in liver cancer: An in vitro study on combination treatment with everolimus and 16F16 YOHEI KANEYA1,2, HIDEYUKI TAKATA2, RYUICHI WADA1,3, SHOKO KURE1,3, KOUSUKE ISHINO1, MITSUHIRO KUDO1, RYOTA KONDO2, NOBUHIKO TANIAI4, RYUJI OHASHI1,3, HIROSHI YOSHIDA2 and ZENYA NAITO1,3 Departments of 1Integrated Diagnostic Pathology, and 2Gastrointestinal and Hepato‑Biliary‑Pancreatic Surgery, Nippon Medical School; 3Department of Diagnostic Pathology, Nippon Medical School Hospital, Tokyo 113‑8602; 4Department of Gastrointestinal and Hepato‑Biliary‑Pancreatic Surgery, Nippon Medical School Musashi Kosugi Hospital, Tokyo 211‑8533, Japan Received April 16, 2020; Accepted October 28, 2020 DOI: 10.3892/ol.2020.12289 Abstract. mTOR is involved in the proliferation of liver 90.2±10.8% by 16F16 but to 62.3±12.2% by combination treat‑ cancer. However, the clinical benefit of treatment with mTOR ment with Ev and 16F16. HuH‑6 cells were resistant to Ev, and inhibitors for liver cancer is controversial. Protein disulfide proliferation was reduced to 86.7±6.1% by Ev and 86.6±4.8% isomerase A member 3 (PDIA3) is a chaperone protein, and by 16F16. However, combination treatment suppressed prolif‑ it supports the assembly of mTOR complex 1 (mTORC1) and eration to 57.7±4.0%. Phosphorylation of S6K was reduced by stabilizes signaling. Inhibition of PDIA3 function by a small Ev in both Li‑7 and HuH‑6 cells. Phosphorylation of 4E‑BP1 molecule known as 16F16 may destabilize mTORC1 and was reduced by combination treatment in both Li‑7 and HuH‑6 enhance the effect of the mTOR inhibitor everolimus (Ev). -
The Metabolic Serine Hydrolases and Their Functions in Mammalian Physiology and Disease Jonathan Z
REVIEW pubs.acs.org/CR The Metabolic Serine Hydrolases and Their Functions in Mammalian Physiology and Disease Jonathan Z. Long* and Benjamin F. Cravatt* The Skaggs Institute for Chemical Biology and Department of Chemical Physiology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, United States CONTENTS 2.4. Other Phospholipases 6034 1. Introduction 6023 2.4.1. LIPG (Endothelial Lipase) 6034 2. Small-Molecule Hydrolases 6023 2.4.2. PLA1A (Phosphatidylserine-Specific 2.1. Intracellular Neutral Lipases 6023 PLA1) 6035 2.1.1. LIPE (Hormone-Sensitive Lipase) 6024 2.4.3. LIPH and LIPI (Phosphatidic Acid-Specific 2.1.2. PNPLA2 (Adipose Triglyceride Lipase) 6024 PLA1R and β) 6035 2.1.3. MGLL (Monoacylglycerol Lipase) 6025 2.4.4. PLB1 (Phospholipase B) 6035 2.1.4. DAGLA and DAGLB (Diacylglycerol Lipase 2.4.5. DDHD1 and DDHD2 (DDHD Domain R and β) 6026 Containing 1 and 2) 6035 2.1.5. CES3 (Carboxylesterase 3) 6026 2.4.6. ABHD4 (Alpha/Beta Hydrolase Domain 2.1.6. AADACL1 (Arylacetamide Deacetylase-like 1) 6026 Containing 4) 6036 2.1.7. ABHD6 (Alpha/Beta Hydrolase Domain 2.5. Small-Molecule Amidases 6036 Containing 6) 6027 2.5.1. FAAH and FAAH2 (Fatty Acid Amide 2.1.8. ABHD12 (Alpha/Beta Hydrolase Domain Hydrolase and FAAH2) 6036 Containing 12) 6027 2.5.2. AFMID (Arylformamidase) 6037 2.2. Extracellular Neutral Lipases 6027 2.6. Acyl-CoA Hydrolases 6037 2.2.1. PNLIP (Pancreatic Lipase) 6028 2.6.1. FASN (Fatty Acid Synthase) 6037 2.2.2. PNLIPRP1 and PNLIPR2 (Pancreatic 2.6.2. -
Protein Disulfide-Isomerase A3 Significantly Reduces Ischemia
Neurochemistry International 122 (2019) 19–30 Contents lists available at ScienceDirect Neurochemistry International journal homepage: www.elsevier.com/locate/neuint Protein disulfide-isomerase A3 significantly reduces ischemia-induced damage by reducing oxidative and endoplasmic reticulum stress T Dae Young Yooa,b,1, Su Bin Choc,1, Hyo Young Junga, Woosuk Kima, Kwon Young Leed, Jong Whi Kima, Seung Myung Moone,f, Moo-Ho Wong, Jung Hoon Choid, Yeo Sung Yoona, ∗ ∗∗ Dae Won Kimh, Soo Young Choic, , In Koo Hwanga, a Department of Anatomy and Cell Biology, College of Veterinary Medicine, Research Institute for Veterinary Science, Seoul National University, Seoul, 08826, South Korea b Department of Anatomy, College of Medicine, Soonchunhyang University, Cheonan, Chungcheongnam, 31151, South Korea c Department of Biomedical Sciences, Research Institute for Bioscience and Biotechnology, Hallym University, Chuncheon, 24252, South Korea d Department of Anatomy, College of Veterinary Medicine and Institute of Veterinary Science, Kangwon National University, Chuncheon, 24341, South Korea e Department of Neurosurgery, Dongtan Sacred Heart Hospital, College of Medicine, Hallym University, Hwaseong, 18450, South Korea f Research Institute for Complementary & Alternative Medicine, Hallym University, Chuncheon, 24253, South Korea g Department of Neurobiology, School of Medicine, Kangwon National University, Chuncheon, 24341, South Korea h Department of Biochemistry and Molecular Biology, Research Institute of Oral Sciences, College of Dentistry, Gangneung-Wonju -
Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in -
Orlistat, a Novel Potent Antitumor Agent for Ovarian Cancer: Proteomic Analysis of Ovarian Cancer Cells Treated with Orlistat
INTERNATIONAL JOURNAL OF ONCOLOGY 41: 523-532, 2012 Orlistat, a novel potent antitumor agent for ovarian cancer: proteomic analysis of ovarian cancer cells treated with Orlistat HUI-QIONG HUANG1*, JING TANG1*, SHENG-TAO ZHOU1, TAO YI1, HONG-LING PENG1, GUO-BO SHEN2, NA XIE2, KAI HUANG2, TAO YANG2, JIN-HUA WU2, CAN-HUA HUANG2, YU-QUAN WEI2 and XIA ZHAO1,2 1Gynecological Oncology of Biotherapy Laboratory, Department of Gynecology and Obstetrics, West China Second Hospital, Sichuan University, Chengdu, Sichuan; 2State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Chengdu, Sichuan, P.R. China Received February 9, 2012; Accepted March 19, 2012 DOI: 10.3892/ijo.2012.1465 Abstract. Orlistat is an orally administered anti-obesity drug larly PKM2. These changes confirmed our hypothesis that that has shown significant antitumor activity in a variety of Orlistat is a potential inhibitor of ovarian cancer and can be tumor cells. To identify the proteins involved in its antitumor used as a novel adjuvant antitumor agent. activity, we employed a proteomic approach to reveal protein expression changes in the human ovarian cancer cell line Introduction SKOV3, following Orlistat treatment. Protein expression profiles were analyzed by 2-dimensional polyacrylamide In the 1920s, the Nobel Prize winner Otto Warburg observed gel electrophoresis (2-DE) and protein identification was a marked increase in glycolysis and enhanced lactate produc- performed on a MALDI-Q-TOF MS/MS instrument. More tion in tumor cells even when maintained in conditions of high than 110 differentially expressed proteins were visualized oxygen tension (termed Warburg effect), leading to widespread by 2-DE and Coomassie brilliant blue staining. -
Monoamine Oxidase a Is Highly Expressed by the Human Corpus Luteum of Pregnancy
REPRODUCTIONRESEARCH Identification and characterization of an oocyte factor required for sperm decondensation in pig Jingyu Li*, Yanjun Huan1,*, Bingteng Xie, Jiaqiang Wang, Yanhua Zhao, Mingxia Jiao, Tianqing Huang, Qingran Kong and Zhonghua Liu Laboratory of Embryo Biotechnology, College of Life Science, Northeast Agricultural University, Harbin, Heilongjiang Province 150030, China and 1Shandong Academy of Agricultural Sciences, Dairy Cattle Research Center, Jinan, Shandong Province 250100, China Correspondence should be addressed to Z Liu; Email: [email protected] or to Q Kong; Email: [email protected] *(J Li and Y Huan contributed equally to this work) Abstract Mammalian oocytes possess factors to support fertilization and embryonic development, but knowledge on these oocyte-specific factors is limited. In the current study, we demonstrated that porcine oocytes with the first polar body collected at 33 h of in vitro maturation sustain IVF with higher sperm decondensation and pronuclear formation rates and support in vitro development with higher cleavage and blastocyst rates, compared with those collected at 42 h (P!0.05). Proteomic analysis performed to clarify the mechanisms underlying the differences in developmental competence between oocytes collected at 33 and 42 h led to the identification of 18 differentially expressed proteins, among which protein disulfide isomerase associated 3 (PDIA3) was selected for further study. Inhibition of maternal PDIA3 via antibody injection disrupted sperm decondensation; conversely, overexpression of PDIA3 in oocytes improved sperm decondensation. In addition, sperm decondensation failure in PDIA3 antibody-injected oocytes was rescued by dithiothreitol, a commonly used disulfide bond reducer. Our results collectively report that maternal PDIA3 plays a crucial role in sperm decondensation by reducing protamine disulfide bonds in porcine oocytes, supporting its utility as a potential tool for oocyte selection in assisted reproduction techniques. -
Serine Hydrolases Involved in Lipid Metabolism in P
Article The Antimalarial Natural Product Salinipostin A Identifies Essential a/b Serine Hydrolases Involved in Lipid Metabolism in P. falciparum Parasites Graphical Abstract Authors Euna Yoo, Christopher J. Schulze, Barbara H. Stokes, ..., Eranthie Weerapana, David A. Fidock, Matthew Bogyo Correspondence [email protected] In Brief Using a probe analog of the antimalarial natural product Sal A, Yoo et al. identify its targets as multiple essential serine hydrolases, including a homolog of human monoacylglycerol lipase. Because parasites were unable to generate robust in vitro resistance to Sal A, these enzymes represent promising targets for antimalarial drugs. Highlights d Semi-synthesis of an affinity analog of the antimalarial natural product Sal A d Identification of serine hydrolases as the primary targets of Sal A in P. falciparum d Sal A covalently binds to and inhibits a MAGL-like protein in P. falciparum d Parasites are unable to generate strong in vitro resistance to Sal A Yoo et al., 2020, Cell Chemical Biology 27, 143–157 February 20, 2020 ª 2020 Elsevier Ltd. https://doi.org/10.1016/j.chembiol.2020.01.001 Cell Chemical Biology Article The Antimalarial Natural Product Salinipostin A Identifies Essential a/b Serine Hydrolases Involved in Lipid Metabolism in P. falciparum Parasites Euna Yoo,1,11 Christopher J. Schulze,1,11 Barbara H. Stokes,2 Ouma Onguka,1 Tomas Yeo,2 Sachel Mok,2 Nina F. Gnadig,€ 2 Yani Zhou,3 Kenji Kurita,4 Ian T. Foe,1 Stephanie M. Terrell,1,5 Michael J. Boucher,6,7 Piotr Cieplak,8 Krittikorn Kumpornsin,9 Marcus C.S. Lee,9 Roger G. -
Testing the Interaction of Flavonoids with Protein Disulfide Isomerase PDIA3 and the Effects on Protein Biological Properties
Testing the interaction of flavonoids with protein disulfide isomerase PDIA3 and the effects on protein biological properties Kanski, Ines Master's thesis / Diplomski rad 2015 Degree Grantor / Ustanova koja je dodijelila akademski / stručni stupanj: University of Zagreb, Faculty of Pharmacy and Biochemistry / Sveučilište u Zagrebu, Farmaceutsko- biokemijski fakultet Permanent link / Trajna poveznica: https://urn.nsk.hr/urn:nbn:hr:163:378527 Rights / Prava: In copyright Download date / Datum preuzimanja: 2021-10-04 Repository / Repozitorij: Repository of Faculty of Pharmacy and Biochemistry University of Zagreb Ines Kanski Testing the interaction of flavonoids with protein disulfide isomerase PDIA3 and the effects on protein biological properties DIPLOMA THESIS University of Zagreb, Faculty of Pharmacy and Biochemistry Zagreb, 2015. This thesis has been registered for the Molecular Biology with Genetic Engineering course and submitted to the University of Zagreb, Faculty of Pharmacy and Biochemistry. The experimental work was conducted at the Department of Biochemical Sciences at Sapienza University of Rome, under the expert guidance of Full Professor Fabio Altieri, Ph.D. and supervision of Assistant Professor Olga Gornik, Ph.D. I would like to thank my mentor Assistant Professor Olga Gornik, Ph.D. for taking time and helping me write this thesis. Also, I would like to express my deep gratitude to my Italian co- mentor Full Professor Fabio Altieri, Ph.D. for accepting me in his laboratory as well as for his professional and valuable advices, patience, compliance and assistance. I would like to thank my Italian colleagues for giving me warm welcome and making great working atmsphere. I wish to give special and endless thank to my parents for supporting me in all my decisions and during the overall education. -
Serine Hydrolase Profiling on Arabidopsis
MCP Papers in Press. Published on January 11, 2009 as Manuscript M800494-MCP200 Diversity of serine hydrolase activities of unchallenged and Botrytis-infected Arabidopsis thaliana Farnusch Kaschani*1, Christian Gu*1, Sherry Niessen3, Heather Hoover3, Benjamin F. Cravatt3, and Renier A. L. van der Hoorn1,2# 1 Plant Chemetics lab, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, 50829 Cologne, Germany Downloaded from 2 Chemical Genomics Centre of the Max Planck Society, Otto Hahn Strasse 15, 44227, Dortmund, Germany 3 The Skaggs Institute for Chemical Biology and Department of Chemical Physiology, The www.mcponline.org Center for Physiological Proteomics, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA. * equal contribution at SCRIPPS RESEARCH INSTITUTE on January 15, 2009 Running title: Arabidopsis Ser hydrolase profiling # Corresponding author: [email protected] Tel/fax:+49 221 5062 245/207 Abbreviations: AARE, acylamino acid-releasing enzyme ABPP, Activity-based protein profiling Bio, Biotin CXE, Carboxyesterase DFP, diisopropyl fluorophosphonate FAAH, fatty acid hydrolase FP, fluorophosphonate MES, methylesterase MudPIT, Multidimensional protein identification technology PAE, Pectinacetylesterase PEG, polyethylene glycol POPL, prolyl oligopeptidase-like Rh, Rhodamine SCPL, Serine carboxy peptidase-like 1 Copyright 2009 by The American Society for Biochemistry and Molecular Biology, Inc. SFGH, S-formylglutathione hydrolase TTP, tripeptidyl peptidase Keywords: Activity-based protein profiling, fluorophosphonate, serine hydrolases, Arabidopsis thaliana, Botrytis cinerea, MudPIT, functional proteomics Activity-based protein profiling (ABPP) is a powerful method to display enzyme activities in proteomes, and provides crucial information on enzyme activity, rather than protein or transcript abundance. We applied ABPP using fluorophosphonate (FP)-based probes to Downloaded from display the activities of serine (Ser) hydrolases in the model plant Arabidopsis thaliana.