Protein Disulfide-Isomerase A3 Significantly Reduces Ischemia
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NADPH-Dependent A-Oxidation of Unsaturated Fatty Acids With
Proc. Natl. Acad. Sci. USA Vol. 89, pp. 6673-6677, August 1992 Biochemistry NADPH-dependent a-oxidation of unsaturated fatty acids with double bonds extending from odd-numbered carbon atoms (5-enoyl-CoA/A3,A2-enoyl-CoA isomerase/A3',52'4-dienoyl-CoA isomerase/2,4-dienoyl-CoA reductase) TOR E. SMELAND*, MOHAMED NADA*, DEAN CUEBASt, AND HORST SCHULZ* *Department of Chemistry, City College of the City University of New York, New York, NY 10031; and tJoined Departments of Chemistry, Manhattan College/College of Mount Saint Vincent, Riverdale, NY 10471 Communicated by Salih J. Wakil, April 13, 1992 ABSTRACT The mitochondrial metabolism of 5-enoyl- a recent observation of Tserng and Jin (5) who reported that CoAs, which are formed during the (3-oxidation of unsaturated the mitochondrial -oxidation of 5-enoyl-CoAs is dependent fatty acids with double bonds extending from odd-numbered on NADPH. Their analysis of metabolites by gas chroma- carbon atoms, was studied with mitochondrial extracts and tography/mass spectrometry led them to propose that the purified enzymes of (3-oxidation. Metabolites were identified double bond of 5-enoyl-CoAs is reduced by NADPH to yield spectrophotometrically and by high performance liquid chro- the corresponding saturated fatty acyl-CoAs, which are then matography. 5-cis-Octenoyl-CoA, a putative metabolite of further degraded by P-oxidation. linolenic acid, was efficiently dehydrogenated by medium- This report addresses the question of how 5-enoyl-CoAs chain acyl-CoA dehydrogenase (EC 1.3.99.3) to 2-trans-5-cis- are chain-shortened by P-oxidation. We demonstrate that octadienoyl-CoA, which was isomerized to 3,5-octadienoyl- 5-enoyl-CoAs, after dehydrogenation to 2,5-dienoyl-CoAs, CoA either by mitochondrial A3,A2-enoyl-CoA isomerase (EC can be isomerized to 2,4-dienoyl-CoAs, which are reduced by 5.3.3.8) or by peroxisomal trifunctional enzyme. -
Regulation of the Tyrosine Kinase Itk by the Peptidyl-Prolyl Isomerase Cyclophilin A
Regulation of the tyrosine kinase Itk by the peptidyl-prolyl isomerase cyclophilin A Kristine N. Brazin, Robert J. Mallis, D. Bruce Fulton, and Amy H. Andreotti* Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA 50011 Edited by Owen N. Witte, University of California, Los Angeles, CA, and approved December 14, 2001 (received for review October 5, 2001) Interleukin-2 tyrosine kinase (Itk) is a nonreceptor protein tyrosine ulation of the cis and trans conformers. The majority of folded kinase of the Tec family that participates in the intracellular proteins for which three-dimensional structural information has signaling events leading to T cell activation. Tec family members been gathered contain trans prolyl imide bonds. The cis con- contain the conserved SH3, SH2, and catalytic domains common to formation occurs at a frequency of Ϸ6% in folded proteins (17), many kinase families, but they are distinguished by unique se- and a small subset of proteins are conformationally heteroge- quences outside of this region. The mechanism by which Itk and neous with respect to cis͞trans isomerization (18–21). Further- related Tec kinases are regulated is not well understood. Our more, the activation energy for interconversion between cis and studies indicate that Itk catalytic activity is inhibited by the peptidyl trans proline is high (Ϸ20 kcal͞mol) leading to slow intercon- prolyl isomerase activity of cyclophilin A (CypA). NMR structural version rates (22). This barrier is a rate-limiting step in protein studies combined with mutational analysis show that a proline- folding and may serve to kinetically isolate two functionally and dependent conformational switch within the Itk SH2 domain reg- conformationally distinct molecules. -
An ER Stress/Defective Unfolded Protein Response Model Richard T
ORIGINAL RESEARCH Ethanol Induced Disordering of Pancreatic Acinar Cell Endoplasmic Reticulum: An ER Stress/Defective Unfolded Protein Response Model Richard T. Waldron,1,2 Hsin-Yuan Su,1 Honit Piplani,1 Joseph Capri,3 Whitaker Cohn,3 Julian P. Whitelegge,3 Kym F. Faull,3 Sugunadevi Sakkiah,1 Ravinder Abrol,1 Wei Yang,1 Bo Zhou,1 Michael R. Freeman,1,2 Stephen J. Pandol,1,2 and Aurelia Lugea1,2 1Department of Medicine, Cedars Sinai Medical Center, Los Angeles, California; 2Department of Medicine, or 3Psychiatry and Biobehavioral Sciences, University of California Los Angeles David Geffen School of Medicine, Los Angeles, California Pancreatic acinar cells Pancreatic acinar cells - no pathology - - Pathology - Ethanol feeding ER sXBP1 Pdi, Grp78… (adaptive UPR) aggregates Proper folding and secretion • disordered ER of proteins processed in the • impaired redox folding endoplasmic reticulum (ER) • ER protein aggregation • secretory defects SUMMARY METHODS: Wild-type and Xbp1þ/- mice were fed control and ethanol diets, then tissues were homogenized and fraction- Heavy alcohol consumption is associated with pancreas ated. ER proteins were labeled with a cysteine-reactive probe, damage, but light drinking shows the opposite effects, isotope-coded affinity tag to obtain a novel pancreatic redox ER reinforcing proteostasis through the unfolded protein proteome. Specific labeling of active serine hydrolases in ER with response orchestrated by X-box binding protein 1. Here, fluorophosphonate desthiobiotin also was characterized pro- ethanol-induced changes in endoplasmic reticulum protein teomically. Protein structural perturbation by redox changes redox and structure/function emerge from an unfolded was evaluated further in molecular dynamic simulations. protein response–deficient genetic model. -
Original Article PDIA3 Knockdown in Dendritic Cells Regulates IL-4 Dependent Mast Cell Degranulation
Int J Clin Exp Med 2019;12(7):8482-8491 www.ijcem.com /ISSN:1940-5901/IJCEM0089109 Original Article PDIA3 knockdown in dendritic cells regulates IL-4 dependent mast cell degranulation Liyuan Tao1,2, Yue Hu1,3, Bin Lv1,3, Lu Zhang1,3, Zhaomeng Zhuang1,3, Meng Li1,3 1Department of Gastroenterology, First Affiliated Hospital of Zhejiang Chinese Medical University, 54 Youdian Road, Hangzhou 310006, China; 2Department of Gastroenterology and Hepatology, Hangzhou Red Cross Hospital, 208 Huancheng Dong Road, Hangzhou 310003, China; 3Key Laboratory of Digestive Pathophysiology of Zhejiang Province, First Affiliated Hospital of Zhejiang Chinese Medical University, 54 Youdian Road, Hangzhou 310006, China Received November 28, 2018; Accepted March 13, 2019; Epub July 15, 2019; Published July 30, 2019 Abstract: Background: A previous study found that expression of protein disulfide isomerase A3 (PDIA3) in den- dritic cells (DCs) is a potential mediator of exaggerated intestinal mucosal immunity response in a rodent model of irritable bowel syndrome (IBS). Aim: The aim of this study was to explore the roles of PDIA3 in the interaction between DCs and mast cells (MCs) in the context of IBS. Methods: This study investigated the effects of shRNA- mediated knockdown of PDIA3 expression in a dendritic cell line and spleen lymphocyte co-cultures. Resultant co-culture supernatants were used to challenge MC. PDIA3 expression was assessed using q-PCR and Western blotting. Expression of surface markers was analyzed by flow cytometry. CD4+ and CD8+ T-cell proliferation were examined using Cell Trace CFSE kits. Cytokine production was determined by ELISA testing. MC viability was ascer- tained using CCK-8 production. -
Phosphoglucose Isomerase (Pgi)
NIPRO ENZYMES PHOSPHOGLUCOSE ISOMERASE (PGI) [EC 5. 3. 1. 9] from Bacillus stearothermophilus D-Glucose 6-phosphate ↔ D-Fructose 6-phosphate SPECIFICATION State : Lyophilized Specific activity : more than 400 U/mg protein Contaminants : (as PGI activity = 100 %) Phosphofructokinase < 0.01 % 6-Phosphogluconate dehydrogenase < 0.01 % Phosphoglucomutase < 0.01 % NADPH oxidase < 0.01 % Glutathione reductase < 0.01 % PROPERTIES Molecular weight : ca. 200,000 Subunit molecular weight : ca. 54,000 Optimum pH : 9.0 - 10.0 (Fig. 1) pH stability : 6.0 - 10.5 (Fig. 2) Isoelectric point : 4.2 Thermal stability : No detectable decrease in activity up to 60 °C. (Fig. 3, 4) Michaelis constants : (95mM Tris-HCI buffer, pH 9.0, at 30 °C) Fructose 6-phospate 0.27 mM STORAGE Stable at -20 °C for at least one year NIPRO ENZYMES ASSAY Principle The change in absorbance is measured at 340nm according to the following reactions. Fructose 6-phosphate PGI Glucose 6-phosphate + G6PDH + Glucose 6-phosphate + NADP Gluconolactone 6-phosphate + NADPH + H Unit Definition One unit of activity is defined as the amount of PGI that forms 1 μmol of glucose 6-phosphate per minute at 30 °C. Solutions Ⅰ Buffer solution ; 100 mM Tris-HCl, pH 9.0 Ⅱ Fructose 6-phosphate (F6P) solution ; 100 mM (0.310 g F6P disodium salt/10 mL distilled water) + + Ⅲ NADP solution ; 22.5 mM (0.188 g NADP sodium salt∙4H2O/10 mL distilled water) Ⅳ Glucose-6-phosphate dehydrogenase (G6PDH) ; (from yeast, Roche Diagnostics K.K., No. 127 671) suspension in 3.2 M (NH4)2SO4 solution (10 mg/2 mL) approx. -
Inhibitor for Protein Disulfide‑Isomerase Family a Member 3
ONCOLOGY LETTERS 21: 28, 2021 Inhibitor for protein disulfide‑isomerase family A member 3 enhances the antiproliferative effect of inhibitor for mechanistic target of rapamycin in liver cancer: An in vitro study on combination treatment with everolimus and 16F16 YOHEI KANEYA1,2, HIDEYUKI TAKATA2, RYUICHI WADA1,3, SHOKO KURE1,3, KOUSUKE ISHINO1, MITSUHIRO KUDO1, RYOTA KONDO2, NOBUHIKO TANIAI4, RYUJI OHASHI1,3, HIROSHI YOSHIDA2 and ZENYA NAITO1,3 Departments of 1Integrated Diagnostic Pathology, and 2Gastrointestinal and Hepato‑Biliary‑Pancreatic Surgery, Nippon Medical School; 3Department of Diagnostic Pathology, Nippon Medical School Hospital, Tokyo 113‑8602; 4Department of Gastrointestinal and Hepato‑Biliary‑Pancreatic Surgery, Nippon Medical School Musashi Kosugi Hospital, Tokyo 211‑8533, Japan Received April 16, 2020; Accepted October 28, 2020 DOI: 10.3892/ol.2020.12289 Abstract. mTOR is involved in the proliferation of liver 90.2±10.8% by 16F16 but to 62.3±12.2% by combination treat‑ cancer. However, the clinical benefit of treatment with mTOR ment with Ev and 16F16. HuH‑6 cells were resistant to Ev, and inhibitors for liver cancer is controversial. Protein disulfide proliferation was reduced to 86.7±6.1% by Ev and 86.6±4.8% isomerase A member 3 (PDIA3) is a chaperone protein, and by 16F16. However, combination treatment suppressed prolif‑ it supports the assembly of mTOR complex 1 (mTORC1) and eration to 57.7±4.0%. Phosphorylation of S6K was reduced by stabilizes signaling. Inhibition of PDIA3 function by a small Ev in both Li‑7 and HuH‑6 cells. Phosphorylation of 4E‑BP1 molecule known as 16F16 may destabilize mTORC1 and was reduced by combination treatment in both Li‑7 and HuH‑6 enhance the effect of the mTOR inhibitor everolimus (Ev). -
Deamidated Human Triosephosphate Isomerase Is a Promising Druggable Target
biomolecules Article Deamidated Human Triosephosphate Isomerase Is a Promising Druggable Target Sergio Enríquez-Flores 1,*, Luis Antonio Flores-López 1,2, Itzhel García-Torres 1, Ignacio de la Mora-de la Mora 1 , Nallely Cabrera 3, Pedro Gutiérrez-Castrellón 4 , Yoalli Martínez-Pérez 5 and Gabriel López-Velázquez 1,* 1 Grupo de Investigación en Biomoléculas y Salud Infantil, Laboratorio de EIMyT, Instituto Nacional de Pediatría, Secretaría de Salud, Mexico City 04530, Mexico; [email protected] (L.A.F.-L.); [email protected] (I.G.-T.); [email protected] (I.d.l.M.-d.l.M.) 2 CONACYT-Instituto Nacional de Pediatría, Secretaría de Salud, Mexico City 04530, Mexico 3 Departamento de Bioquímica y Biología Estructural, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico; [email protected] 4 Hospital General Dr. Manuel Gea González, Mexico City 14080, Mexico; [email protected] 5 Unidad de Investigación en Medicina Experimental, Facultad de Medicina, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico; [email protected] * Correspondence: [email protected] (S.E.-F.); [email protected] (G.L.-V.); Tel.: +52-55-10840900 (G.L.-V.) Received: 9 June 2020; Accepted: 10 July 2020; Published: 15 July 2020 Abstract: Therapeutic strategies for the treatment of any severe disease are based on the discovery and validation of druggable targets. The human genome encodes only 600–1500 targets for small-molecule drugs, but posttranslational modifications lead to a considerably larger druggable proteome. The spontaneous conversion of asparagine (Asn) residues to aspartic acid or isoaspartic acid is a frequent modification in proteins as part of the process called deamidation. -
Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in -
Scaffoldless Engineered Enzyme Assembly for Enhanced Methanol Utilization
Scaffoldless engineered enzyme assembly for enhanced methanol utilization J. Vincent Pricea, Long Chena, W. Brian Whitakera,b, Eleftherios Papoutsakisa,b, and Wilfred Chena,1 aDepartment of Chemical and Biomolecular Engineering, University of Delaware, Newark, DE 19716; and bThe Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711 Edited by Arnold L. Demain, Drew University, Madison, NJ, and approved September 27, 2016 (received for review February 4, 2016) Methanol is an important feedstock derived from natural gas and organisms requires electrons in the form of NADH and culture can be chemically converted into commodity and specialty chem- conditions largely microaerobic or anaerobic (7, 10). Thus, or- icals at high pressure and temperature. Although biological ganisms that can grow anaerobically or microaerobically and NAD- conversion of methanol can proceed at ambient conditions, there dependent Mdhs are essential for effective conversion of methanol + is a dearth of engineered microorganisms that use methanol to to desirable metabolites (7). Although NAD(P) -dependent Mdhs produce metabolites. In nature, methanol dehydrogenase (Mdh), are the best candidates for engineering synthetic methylotrophs which converts methanol to formaldehyde, highly favors the reverse like Escherichia coli, these enzymes have poor predicted thermo- reaction. Thus, efficient coupling with the irreversible sequestration dynamic properties and are thus dependent on maintaining low of formaldehyde by 3-hexulose-6-phosphate synthase (Hps) -
Orlistat, a Novel Potent Antitumor Agent for Ovarian Cancer: Proteomic Analysis of Ovarian Cancer Cells Treated with Orlistat
INTERNATIONAL JOURNAL OF ONCOLOGY 41: 523-532, 2012 Orlistat, a novel potent antitumor agent for ovarian cancer: proteomic analysis of ovarian cancer cells treated with Orlistat HUI-QIONG HUANG1*, JING TANG1*, SHENG-TAO ZHOU1, TAO YI1, HONG-LING PENG1, GUO-BO SHEN2, NA XIE2, KAI HUANG2, TAO YANG2, JIN-HUA WU2, CAN-HUA HUANG2, YU-QUAN WEI2 and XIA ZHAO1,2 1Gynecological Oncology of Biotherapy Laboratory, Department of Gynecology and Obstetrics, West China Second Hospital, Sichuan University, Chengdu, Sichuan; 2State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Chengdu, Sichuan, P.R. China Received February 9, 2012; Accepted March 19, 2012 DOI: 10.3892/ijo.2012.1465 Abstract. Orlistat is an orally administered anti-obesity drug larly PKM2. These changes confirmed our hypothesis that that has shown significant antitumor activity in a variety of Orlistat is a potential inhibitor of ovarian cancer and can be tumor cells. To identify the proteins involved in its antitumor used as a novel adjuvant antitumor agent. activity, we employed a proteomic approach to reveal protein expression changes in the human ovarian cancer cell line Introduction SKOV3, following Orlistat treatment. Protein expression profiles were analyzed by 2-dimensional polyacrylamide In the 1920s, the Nobel Prize winner Otto Warburg observed gel electrophoresis (2-DE) and protein identification was a marked increase in glycolysis and enhanced lactate produc- performed on a MALDI-Q-TOF MS/MS instrument. More tion in tumor cells even when maintained in conditions of high than 110 differentially expressed proteins were visualized oxygen tension (termed Warburg effect), leading to widespread by 2-DE and Coomassie brilliant blue staining. -
Monoamine Oxidase a Is Highly Expressed by the Human Corpus Luteum of Pregnancy
REPRODUCTIONRESEARCH Identification and characterization of an oocyte factor required for sperm decondensation in pig Jingyu Li*, Yanjun Huan1,*, Bingteng Xie, Jiaqiang Wang, Yanhua Zhao, Mingxia Jiao, Tianqing Huang, Qingran Kong and Zhonghua Liu Laboratory of Embryo Biotechnology, College of Life Science, Northeast Agricultural University, Harbin, Heilongjiang Province 150030, China and 1Shandong Academy of Agricultural Sciences, Dairy Cattle Research Center, Jinan, Shandong Province 250100, China Correspondence should be addressed to Z Liu; Email: [email protected] or to Q Kong; Email: [email protected] *(J Li and Y Huan contributed equally to this work) Abstract Mammalian oocytes possess factors to support fertilization and embryonic development, but knowledge on these oocyte-specific factors is limited. In the current study, we demonstrated that porcine oocytes with the first polar body collected at 33 h of in vitro maturation sustain IVF with higher sperm decondensation and pronuclear formation rates and support in vitro development with higher cleavage and blastocyst rates, compared with those collected at 42 h (P!0.05). Proteomic analysis performed to clarify the mechanisms underlying the differences in developmental competence between oocytes collected at 33 and 42 h led to the identification of 18 differentially expressed proteins, among which protein disulfide isomerase associated 3 (PDIA3) was selected for further study. Inhibition of maternal PDIA3 via antibody injection disrupted sperm decondensation; conversely, overexpression of PDIA3 in oocytes improved sperm decondensation. In addition, sperm decondensation failure in PDIA3 antibody-injected oocytes was rescued by dithiothreitol, a commonly used disulfide bond reducer. Our results collectively report that maternal PDIA3 plays a crucial role in sperm decondensation by reducing protamine disulfide bonds in porcine oocytes, supporting its utility as a potential tool for oocyte selection in assisted reproduction techniques. -
Testing the Interaction of Flavonoids with Protein Disulfide Isomerase PDIA3 and the Effects on Protein Biological Properties
Testing the interaction of flavonoids with protein disulfide isomerase PDIA3 and the effects on protein biological properties Kanski, Ines Master's thesis / Diplomski rad 2015 Degree Grantor / Ustanova koja je dodijelila akademski / stručni stupanj: University of Zagreb, Faculty of Pharmacy and Biochemistry / Sveučilište u Zagrebu, Farmaceutsko- biokemijski fakultet Permanent link / Trajna poveznica: https://urn.nsk.hr/urn:nbn:hr:163:378527 Rights / Prava: In copyright Download date / Datum preuzimanja: 2021-10-04 Repository / Repozitorij: Repository of Faculty of Pharmacy and Biochemistry University of Zagreb Ines Kanski Testing the interaction of flavonoids with protein disulfide isomerase PDIA3 and the effects on protein biological properties DIPLOMA THESIS University of Zagreb, Faculty of Pharmacy and Biochemistry Zagreb, 2015. This thesis has been registered for the Molecular Biology with Genetic Engineering course and submitted to the University of Zagreb, Faculty of Pharmacy and Biochemistry. The experimental work was conducted at the Department of Biochemical Sciences at Sapienza University of Rome, under the expert guidance of Full Professor Fabio Altieri, Ph.D. and supervision of Assistant Professor Olga Gornik, Ph.D. I would like to thank my mentor Assistant Professor Olga Gornik, Ph.D. for taking time and helping me write this thesis. Also, I would like to express my deep gratitude to my Italian co- mentor Full Professor Fabio Altieri, Ph.D. for accepting me in his laboratory as well as for his professional and valuable advices, patience, compliance and assistance. I would like to thank my Italian colleagues for giving me warm welcome and making great working atmsphere. I wish to give special and endless thank to my parents for supporting me in all my decisions and during the overall education.