Vesicular Release of Ebola Virus Matrix Protein VP40
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Zinc and Copper Ions Differentially Regulate Prion-Like Phase
viruses Article Zinc and Copper Ions Differentially Regulate Prion-Like Phase Separation Dynamics of Pan-Virus Nucleocapsid Biomolecular Condensates Anne Monette 1,* and Andrew J. Mouland 1,2,* 1 Lady Davis Institute at the Jewish General Hospital, Montréal, QC H3T 1E2, Canada 2 Department of Medicine, McGill University, Montréal, QC H4A 3J1, Canada * Correspondence: [email protected] (A.M.); [email protected] (A.J.M.) Received: 2 September 2020; Accepted: 12 October 2020; Published: 18 October 2020 Abstract: Liquid-liquid phase separation (LLPS) is a rapidly growing research focus due to numerous demonstrations that many cellular proteins phase-separate to form biomolecular condensates (BMCs) that nucleate membraneless organelles (MLOs). A growing repertoire of mechanisms supporting BMC formation, composition, dynamics, and functions are becoming elucidated. BMCs are now appreciated as required for several steps of gene regulation, while their deregulation promotes pathological aggregates, such as stress granules (SGs) and insoluble irreversible plaques that are hallmarks of neurodegenerative diseases. Treatment of BMC-related diseases will greatly benefit from identification of therapeutics preventing pathological aggregates while sparing BMCs required for cellular functions. Numerous viruses that block SG assembly also utilize or engineer BMCs for their replication. While BMC formation first depends on prion-like disordered protein domains (PrLDs), metal ion-controlled RNA-binding domains (RBDs) also orchestrate their formation. Virus replication and viral genomic RNA (vRNA) packaging dynamics involving nucleocapsid (NC) proteins and their orthologs rely on Zinc (Zn) availability, while virus morphology and infectivity are negatively influenced by excess Copper (Cu). While virus infections modify physiological metal homeostasis towards an increased copper to zinc ratio (Cu/Zn), how and why they do this remains elusive. -
How Influenza Virus Uses Host Cell Pathways During Uncoating
cells Review How Influenza Virus Uses Host Cell Pathways during Uncoating Etori Aguiar Moreira 1 , Yohei Yamauchi 2 and Patrick Matthias 1,3,* 1 Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland; [email protected] 2 Faculty of Life Sciences, School of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, UK; [email protected] 3 Faculty of Sciences, University of Basel, 4031 Basel, Switzerland * Correspondence: [email protected] Abstract: Influenza is a zoonotic respiratory disease of major public health interest due to its pan- demic potential, and a threat to animals and the human population. The influenza A virus genome consists of eight single-stranded RNA segments sequestered within a protein capsid and a lipid bilayer envelope. During host cell entry, cellular cues contribute to viral conformational changes that promote critical events such as fusion with late endosomes, capsid uncoating and viral genome release into the cytosol. In this focused review, we concisely describe the virus infection cycle and highlight the recent findings of host cell pathways and cytosolic proteins that assist influenza uncoating during host cell entry. Keywords: influenza; capsid uncoating; HDAC6; ubiquitin; EPS8; TNPO1; pandemic; M1; virus– host interaction Citation: Moreira, E.A.; Yamauchi, Y.; Matthias, P. How Influenza Virus Uses Host Cell Pathways during 1. Introduction Uncoating. Cells 2021, 10, 1722. Viruses are microscopic parasites that, unable to self-replicate, subvert a host cell https://doi.org/10.3390/ for their replication and propagation. Despite their apparent simplicity, they can cause cells10071722 severe diseases and even pose pandemic threats [1–3]. -
Ebola Virus VP40 Real-Time RT-PCR Assay for Use Under an Emergency Use Authorization Only
Ebola Virus VP40 Real-Time RT-PCR Assay Centers for Disease Control and Prevention For Use Under an Emergency Use Authorization Only Instructions for Use January 2016 Page 0 of 50 Table of Contents Introduction .................................................................................................................................... 2 Specimens ....................................................................................................................................... 3 Equipment and Consumables ........................................................................................................ 3 Quality Control ............................................................................................................................... 5 Nucleic Acid Extraction ................................................................................................................. 7 Testing Algorithm .......................................................................................................................... 8 rRT-PCR Assay .............................................................................................................................. 9 Interpreting Test Results .............................................................................................................. 14 Overall Test Interpretation and Reporting Instructions ............................................................. 18 Assay Limitations, Warnings and Precautions .......................................................................... -
WHO Expert Committee on Biological Standardization: Sixty-Eighth Report (WHO Technical Report Series, No
This report presents the recommendations of a WHO Expert Committee commissioned to coordinate activities leading to the 1011 adoption of international recommendations for the production WHO Technical Report Series and control of vaccines and other biological substances, and the establishment of international biological reference materials. 1011 Following a brief introduction, the report summarizes a number WHO of general issues brought to the attention of the Committee. The next part of the report, of particular relevance to manufacturers Expert on Biological Standardization Committee and national regulatory authorities, outlines the discussions held on the development and adoption of new and revised WHO Recommendations, Guidelines and guidance documents. Following these discussions, WHO Guidelines on the quality, safety and efficacy of Ebola vaccines, and WHO Guidelines on procedures and data requirements for changes to approved biotherapeutic products were adopted on the recommendation of the Committee. In addition, the following two WHO guidance documents on the WHO prequalification of in vitro diagnostic medical devices were also adopted: (a) Technical Specifications Series (TSS) for WHO Prequalification – WHO Expert Committee Diagnostic Assessment: Human immunodeficiency virus (HIV) rapid diagnostic tests for professional use and/or self- on Biological testing; and (b) Technical Guidance Series (TGS) for WHO Prequalification – Diagnostic Assessment: Establishing stability of in vitro diagnostic medical devices. Standardization Subsequent -
Structural Organization of a Filamentous Influenza a Virus
Structural organization of a filamentous influenza A virus Lesley J. Calder, Sebastian Wasilewski, John A. Berriman1, and Peter B. Rosenthal2 Division of Physical Biochemistry, MRC National Institute for Medical Research, London NW7 1AA, United Kingdom Edited* by Robert A. Lamb, Northwestern University, Evanston, IL, and approved April 27, 2010 (received for review February 26, 2010) Influenza is a lipid-enveloped, pleomorphic virus. We combine electron HA trimer in the neutral pH conformation (9), proteolytic frag- cryotomography and analysis of images of frozen-hydrated virions ments of the HA in the low pH conformation (10, 11), and the NA to determine the structural organization of filamentous influenza A tetramer (12, 13) have provided a molecular understanding of the virus. Influenza A/Udorn/72 virions are capsule-shaped or filamentous function of these proteins. particles of highly uniform diameter. We show that the matrix layer Further understanding of the virus life cycle requires 3D studies adjacent to the membrane is an ordered helix of the M1 protein and its of ultrastructure that can identify the specific molecular inter- close interaction with the surrounding envelope determines virion actions that govern virus self-assembly. In addition, ultrastructural morphology. The ribonucleoprotein particles (RNPs) that package the changes that are essential to membrane fusion and virion disas- genome segments form a tapered assembly at one end of the virus sembly during cell entry remain to be described. Electron cry- interior. The neuraminidase, which is present in smaller numbers than omicroscopy of influenza virions that are vitrified by rapid plunge- the hemagglutinin, clusters in patches and are typically present at the freezing (14–17) shows contrast from virion structures themselves end of the virion opposite to RNP attachment. -
Virus-Host Interaction: the Multifaceted Roles of Ifitms And
Virus-Host Interaction: The Multifaceted Roles of IFITMs and LY6E in HIV Infection DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Jingyou Yu Graduate Program in Comparative and Veterinary Medicine The Ohio State University 2018 Dissertation Committee: Shan-Lu Liu, MD, PhD, Advisor Patrick L. Green, PhD Jianrong Li, DVM., PhD Jesse J. Kwiek, PhD Copyrighted by Jingyou Yu 2018 Abstract With over 1.8 million newly infected people each year, the worldwide HIV-1 epidemic remains an imperative challenge for public health. Recent work has demonstrated that type I interferons (IFNs) efficiently suppress HIV infection through induction of hundreds of interferon stimulated genes (ISGs). These ISGs target distinct infection stages of invading pathogens and shape innate immunity. Among these, interferon induced transmembrane proteins (IFITMs) and lymphocyte antigen 6 complex, locus E (LY6E) have been shown to differentially modulate viral infections. However, their effects on HIV are not fully understood. In my thesis work, I provided evidence in Chapter 2 showing that IFITM proteins, particularly IFITM2 and IFITM3, specifically antagonize the HIV-1 envelope glycoprotein (Env), thereby inhibiting viral infection. IFITM proteins interacted with HIV-1 Env in viral producer cells, leading to impaired Env processing and virion incorporation. Notably, the level of IFITM incorporation into HIV-1 virions did not strictly correlate with the extent of inhibition. Prolonged passage of HIV-1 in IFITM-expressing T lymphocytes led to emergence of Env mutants that overcome IFITM restriction. The ability of IFITMs to inhibit cell-to-cell infection can be extended to HIV-1 primary isolates, HIV-2 and SIVs; however, the extent of inhibition appeared to be virus- strain dependent. -
A Novel Ebola Virus VP40 Matrix Protein-Based Screening for Identification of Novel Candidate Medical Countermeasures
viruses Communication A Novel Ebola Virus VP40 Matrix Protein-Based Screening for Identification of Novel Candidate Medical Countermeasures Ryan P. Bennett 1,† , Courtney L. Finch 2,† , Elena N. Postnikova 2 , Ryan A. Stewart 1, Yingyun Cai 2 , Shuiqing Yu 2 , Janie Liang 2, Julie Dyall 2 , Jason D. Salter 1 , Harold C. Smith 1,* and Jens H. Kuhn 2,* 1 OyaGen, Inc., 77 Ridgeland Road, Rochester, NY 14623, USA; [email protected] (R.P.B.); [email protected] (R.A.S.); [email protected] (J.D.S.) 2 NIH/NIAID/DCR/Integrated Research Facility at Fort Detrick (IRF-Frederick), Frederick, MD 21702, USA; courtney.fi[email protected] (C.L.F.); [email protected] (E.N.P.); [email protected] (Y.C.); [email protected] (S.Y.); [email protected] (J.L.); [email protected] (J.D.) * Correspondence: [email protected] (H.C.S.); [email protected] (J.H.K.); Tel.: +1-585-697-4351 (H.C.S.); +1-301-631-7245 (J.H.K.) † These authors contributed equally to this work. Abstract: Filoviruses, such as Ebola virus and Marburg virus, are of significant human health concern. From 2013 to 2016, Ebola virus caused 11,323 fatalities in Western Africa. Since 2018, two Ebola virus disease outbreaks in the Democratic Republic of the Congo resulted in 2354 fatalities. Although there is progress in medical countermeasure (MCM) development (in particular, vaccines and antibody- based therapeutics), the need for efficacious small-molecule therapeutics remains unmet. Here we describe a novel high-throughput screening assay to identify inhibitors of Ebola virus VP40 matrix protein association with viral particle assembly sites on the interior of the host cell plasma membrane. -
Defining the Multiplicity and Type of Infection for the Production of Zaire Ebola Virus-Like Particles in the Insect Cell Baculovirus Expression System
DEFINING THE MULTIPLICITY AND TYPE OF INFECTION FOR THE PRODUCTION OF ZAIRE EBOLA VIRUS-LIKE PARTICLES IN THE INSECT CELL BACULOVIRUS EXPRESSION SYSTEM Ana Ruth Pastor, Instituto de Biotecnología, Universidad Nacional Autónoma de México Av. Universidad 2001 Col. Chamilpa, México [email protected] Gonzalo González-Domínguez, Instituto de Biotecnología. Universidad Nacional Autónoma de México Carlos F. Arias, Instituto de Biotecnología. Universidad Nacional Autónoma de México Alejandro Alagón, Instituto de Biotecnología. Universidad Nacional Autónoma de México Octavio T. Ramírez, Instituto de Biotecnología. Universidad Nacional Autónoma de México Laura A. Palomares, Instituto de Biotecnología. Universidad Nacional Autónoma de México Key Words: Ebola virus, ZEBOV-VLP’s, coinfection, hemorrhagic fever, immunogenic response. Ebola virus hemorrhagic fever affects thousands of people worldwide with high mortality rates. The Ebola virus has a short incubation time between 2-21 days and death usually occurs within 4-10 days1. Ebola virus disease is characterized by a sudden onset of fever, weakness, headache, diarrhea and vomiting, internal and external bleeding2. In the Filovirus family, Zaire Ebola virus (ZEBOV) is the most aggressive and virulent species, its fatality rates have been reported to be up to 90%3. Even when important advances in vaccine development have occurred, the need of safe and effective vaccines persists4. An alternative is the production of virus-like particles, which are formed by the recombinant virus structural proteins that self-assemble into highly immunogenic structures5. The ZEBOV contains three main structural proteins: the glycoprotein (GP), the viral matrix protein 40 (VP40) and the nucleoprotein (NP). GP induces humoral and cellular responses by itself but when VP40 is co-expressed, the immune response increases in a mouse model6. -
APICAL M2 PROTEIN IS REQUIRED for EFFICIENT INFLUENZA a VIRUS REPLICATION by Nicholas Wohlgemuth a Dissertation Submitted To
APICAL M2 PROTEIN IS REQUIRED FOR EFFICIENT INFLUENZA A VIRUS REPLICATION by Nicholas Wohlgemuth A dissertation submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland October, 2017 © Nicholas Wohlgemuth 2017 All rights reserved ABSTRACT Influenza virus infections are a major public health burden around the world. This dissertation examines the influenza A virus M2 protein and how it can contribute to a better understanding of influenza virus biology and improve vaccination strategies. M2 is a member of the viroporin class of virus proteins characterized by their predicted ion channel activity. While traditionally studied only for their ion channel activities, viroporins frequently contain long cytoplasmic tails that play important roles in virus replication and disruption of cellular function. The currently licensed live, attenuated influenza vaccine (LAIV) contains a mutation in the M segment coding sequence of the backbone virus which confers a missense mutation (alanine to serine) in the M2 gene at amino acid position 86. Previously discounted for not showing a phenotype in immortalized cell lines, this mutation contributes to both the attenuation and temperature sensitivity phenotypes of LAIV in primary human nasal epithelial cells. Furthermore, viruses encoding serine at M2 position 86 induced greater IFN-λ responses at early times post infection. Reversing mutations such as this, and otherwise altering LAIV’s ability to replicate in vivo, could result in an improved LAIV development strategy. Influenza viruses infect at and egress from the apical plasma membrane of airway epithelial cells. Accordingly, the virus transmembrane proteins, HA, NA, and M2, are all targeted to the apical plasma membrane ii and contribute to egress. -
Structural Rearrangement of Ebola Virus VP40 Begets Multiple Functions in the Virus Life Cycle
Structural Rearrangement of Ebola Virus VP40 Begets Multiple Functions in the Virus Life Cycle Zachary A. Bornholdt,1 Takeshi Noda,4 Dafna M. Abelson,1 Peter Halfmann,6 Malcolm R. Wood,2 Yoshihiro Kawaoka,4,5,6,7 and Erica Ollmann Saphire1,3,* 1Department of Immunology and Microbial Science 2Core Microscopy Facility 3The Skaggs Institute for Chemical Biology The Scripps Research Institute, La Jolla, CA 92037, USA 4Division of Virology, Department of Microbiology and Immunology 5International Research Center for Infectious Diseases Institute of Medical Science, University of Tokyo, Tokyo 108-8639, Japan 6Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI 53706, USA 7Infection-Induced Host Responses Project, Exploratory Research for Advanced Technology, Saitama 332-0012, Japan *Correspondence: [email protected] http://dx.doi.org/10.1016/j.cell.2013.07.015 SUMMARY (Kuhn, 2008). Ebolaviruses assemble and bud from the cell membrane in a process driven by the viral matrix protein VP40 Proteins, particularly viral proteins, can be multifunc- (Harty et al., 2000; Panchal et al., 2003). VP40 alone is sufficient tional, but the mechanisms behind multifunctionality to assemble and bud filamentous virus-like particles (VLPs) from are not fully understood. Here, we illustrate through cells (Geisbert and Jahrling, 1995; Johnson et al., 2006; Noda multiple crystal structures, biochemistry, and cellular et al., 2002). microscopy that VP40 rearranges into different struc- The first crystal structure of VP40 suggested that this protein is tures, each with a distinct function required for the monomeric (Dessen et al., 2000a, 2000b). The structure revealed that VP40 contains distinct N- and C-terminal domains (NTDs ebolavirus life cycle. -
XFEL Structures of the Influenza M2 Proton Channel: SPECIAL FEATURE Room Temperature Water Networks and Insights Into Proton Conduction
XFEL structures of the influenza M2 proton channel: SPECIAL FEATURE Room temperature water networks and insights into proton conduction Jessica L. Thomastona, Rahel A. Woldeyesb, Takanori Nakane (中根 崇智)c, Ayumi Yamashitad, Tomoyuki Tanakad, Kotaro Koiwaie, Aaron S. Brewsterf, Benjamin A. Baradb, Yujie Cheng, Thomas Lemmina, Monarin Uervirojnangkoornh,i,j,k,l, Toshi Arimad, Jun Kobayashid, Tetsuya Masudad,m, Mamoru Suzukid,n, Michihiro Sugaharad, Nicholas K. Sauterf, Rie Tanakad, Osamu Nurekic, Kensuke Tonoo, Yasumasa Jotio, Eriko Nangod, So Iwatad,p, Fumiaki Yumotoe, James S. Fraserb, and William F. DeGradoa,1 aDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158; bDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94158; cDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo 113-0033, Japan; dSPring-8 Angstrom Compact Free Electron Laser (SACLA) Science Research Group, RIKEN SPring-8 Center, Saitama 351-0198, Japan; eStructural Biology Research Center, High Energy Accelerator Research Organization (KEK), Ibaraki 305-0801, Japan; fMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720; gSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853; hDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305; iHoward Hughes Medical Institute, Stanford University, Stanford, CA 94305; jDepartment of Neurology -
Virus Entry, Assembly, Budding, and Membrane Rafts Nathalie Chazal, Denis Gerlier
Virus Entry, Assembly, Budding, and Membrane Rafts Nathalie Chazal, Denis Gerlier To cite this version: Nathalie Chazal, Denis Gerlier. Virus Entry, Assembly, Budding, and Membrane Rafts. Microbi- ology and Molecular Biology Reviews, American Society for Microbiology, 2003, 67 (2), pp.226-237. 10.1128/MMBR.67.2.226-237.2003. hal-02147208 HAL Id: hal-02147208 https://hal.archives-ouvertes.fr/hal-02147208 Submitted on 7 Jun 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, June 2003, p. 226–237 Vol. 67, No. 2 1092-2172/03/$08.00ϩ0 DOI: 10.1128/MMBR.67.2.226–237.2003 Copyright © 2003, American Society for Microbiology. All Rights Reserved. Virus Entry, Assembly, Budding, and Membrane Rafts Nathalie Chazal1* and Denis Gerlier2 Immunologie-Virologie, EA 3038, Universite´Paul Sabatier, 31062 Toulouse,1 and Immunite´& Infections Virales, CNRS-UCBL UMR 5537, IFR Laennec, 69372 Lyon Cedex 08,2 France INTRODUCTION .......................................................................................................................................................226