An Overview of Chemosynthetic Symbioses in Bivalves
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Marine Bivalve Molluscs
Marine Bivalve Molluscs Marine Bivalve Molluscs Second Edition Elizabeth Gosling This edition first published 2015 © 2015 by John Wiley & Sons, Ltd First edition published 2003 © Fishing News Books, a division of Blackwell Publishing Registered Office John Wiley & Sons, Ltd, The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK Editorial Offices 9600 Garsington Road, Oxford, OX4 2DQ, UK The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK 111 River Street, Hoboken, NJ 07030‐5774, USA For details of our global editorial offices, for customer services and for information about how to apply for permission to reuse the copyright material in this book please see our website at www.wiley.com/wiley‐blackwell. The right of the author to be identified as the author of this work has been asserted in accordance with the UK Copyright, Designs and Patents Act 1988. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, except as permitted by the UK Copyright, Designs and Patents Act 1988, without the prior permission of the publisher. Designations used by companies to distinguish their products are often claimed as trademarks. All brand names and product names used in this book are trade names, service marks, trademarks or registered trademarks of their respective owners. The publisher is not associated with any product or vendor mentioned in this book. Limit of Liability/Disclaimer of Warranty: While the publisher and author(s) have used their best efforts in preparing this book, they make no representations or warranties with respect to the accuracy or completeness of the contents of this book and specifically disclaim any implied warranties of merchantability or fitness for a particular purpose. -
COSSMANNIANA Bulletin Du Groupe D'étude Et De Recherche Macrofaune Cénozoïque
COSSMANNIANA Bulletin du Groupe d'Étude et de Recherche Macrofaune Cénozoïque Tome 3, numéro 4 Décembre 1995 ISSN 1157-4402 GROUPE D'ÉTUDE ET DE RECHERCHE MACROFAUNE CÉNOZOïQUE "Maisonpour tous" 26, rue Gérard Philippe 94120 FONTENAY-SOUS-SOIS Président . .. ... Jacques PONS Secrétaire .. PierreLOZOUET Trésorier . .. .. Philippe MAESTRATI Dessins de couverture : Jacques LERENARD Maquette et Édition: Jacques LERENARD [eau-Michel PACAUD Couverture: Campanile (Campanilopa) giganteum, d'après la figure 137-45 de l'tconographie (grossissement 3/8); et individu bréphiqu e (hauteur totale : 2 mm), muni de son périostracum et de sa protoconque (coll. LeRenard) . COSSMANNIANA, Paris, 3 (4), Décembre 1995, pp. 133-150, sans fig. ISSN: 1157-4402 . RÉVISION DES MOLLUSQUES PALÉOGÈNES DU BASSIN DE PARIS III - CHRONOLOGIE DES CRÉATEURS DE RÉFÉRENCES PRIMAIRES par Jacques ·LERENARD Laboratoire de Biologiedes Invertébrés Marins et Malacologie, Muséum.National d'Histoire Naturelle, 55,rue de Buffon- 75005 Paris - FRANCE RÉSUMÉ - La liste des 437 publications dans lesquelles ont été introduites des références primaires figurant dans la partie II (LERENARD & PACAUD, 1995, pp. 65-132) est donnée. Il s'agit de la première liste de l'ensemble des publications concernant des nouveaux noms ou des nouvelles espèces paléogènes de Mollusques du bassin de Paris. TITLE - Revision of the Paris Basin Paleogene MoIlusca. III: Chronological Iist of the authors of primary references. ABSTRACT - The 437 publications, in which the primary references cited in part II (LERENARD & PACAUD, 1995, pp. 65-132) have been introduced, are given. This constitutes the first list of aIl the publications that are conceming new species or new names of Paris Basin Paleogene Molluscan species. -
(Mollusca, Bivalvia) from Deep-Water, Beaufort Sea, Northern Alaska
A peer-reviewed open-access journal ZooKeys 462: 11–26A new (2014) genus and species of Thyasiridae( Mollusca, Bivalvia) from deep-water 11 doi: 10.3897/zookeys.462.6790 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research A new genus and species of Thyasiridae (Mollusca, Bivalvia) from deep-water, Beaufort Sea, northern Alaska Paul Valentich-Scott1, Charles L. Powell, II2, Thomas D. Lorenson2, Brian E. Edwards2 1 Santa Barbara Museum of Natural History, 2259 Puesta del Sol Road, Santa Barbara, CA 93105 2 U.S. Geological Survey, 345 Middlefield Road, Menlo Park, CA 94025 Corresponding author: Paul Valentich-Scott ([email protected]) Academic editor: R. C. Willan | Received 12 December 2013 | Accepted 11 November 2014 | Published 10 December 2014 http://zoobank.org/865205A2-6C79-4131-9C25-5625F3D8C59B Citation: Valentich-Scott P, Powell II CL, Lorenson TD, Edwards BR (2014) A new genus and species of Thyasiridae (Mollusca, Bivalvia) from deep-water, Beaufort Sea, northern Alaska. ZooKeys 462: 11–26. doi: 10.3897/zookeys.462.6790 Abstract Bivalve mollusk shells were collected in 2350 m depth in the Beaufort Sea, Arctic Ocean off northern Alaska. Initial identification suggested the specimens were a member of the bivalve family Thyasiridae, but no known eastern Pacific or Arctic living or fossil thyasirid resembled these deep-water specimens. Comparisons were made with the type of the genera Maorithyas Fleming, 1950, Spinaxinus Oliver & Holmes, 2006, Axinus Sowerby, 1821, and Parathyasira Iredale, 1930. We determined the Beaufort Sea species represents a new genus, herein described as Wallerconcha. These specimens also represent a new species, herein named Wallerconcha sarae. -
Abstract Volume
ABSTRACT VOLUME August 11-16, 2019 1 2 Table of Contents Pages Acknowledgements……………………………………………………………………………………………...1 Abstracts Symposia and Contributed talks……………………….……………………………………………3-225 Poster Presentations…………………………………………………………………………………226-291 3 Venom Evolution of West African Cone Snails (Gastropoda: Conidae) Samuel Abalde*1, Manuel J. Tenorio2, Carlos M. L. Afonso3, and Rafael Zardoya1 1Museo Nacional de Ciencias Naturales (MNCN-CSIC), Departamento de Biodiversidad y Biologia Evolutiva 2Universidad de Cadiz, Departamento CMIM y Química Inorgánica – Instituto de Biomoléculas (INBIO) 3Universidade do Algarve, Centre of Marine Sciences (CCMAR) Cone snails form one of the most diverse families of marine animals, including more than 900 species classified into almost ninety different (sub)genera. Conids are well known for being active predators on worms, fishes, and even other snails. Cones are venomous gastropods, meaning that they use a sophisticated cocktail of hundreds of toxins, named conotoxins, to subdue their prey. Although this venom has been studied for decades, most of the effort has been focused on Indo-Pacific species. Thus far, Atlantic species have received little attention despite recent radiations have led to a hotspot of diversity in West Africa, with high levels of endemic species. In fact, the Atlantic Chelyconus ermineus is thought to represent an adaptation to piscivory independent from the Indo-Pacific species and is, therefore, key to understanding the basis of this diet specialization. We studied the transcriptomes of the venom gland of three individuals of C. ermineus. The venom repertoire of this species included more than 300 conotoxin precursors, which could be ascribed to 33 known and 22 new (unassigned) protein superfamilies, respectively. Most abundant superfamilies were T, W, O1, M, O2, and Z, accounting for 57% of all detected diversity. -
Metagenomic Analysis Suggests Broad Metabolic Potential in Extracellular Symbionts of the Bivalve Thyasira Cf
McCuaig et al. Animal Microbiome (2020) 2:7 Animal Microbiome https://doi.org/10.1186/s42523-020-00025-9 RESEARCH ARTICLE Open Access Metagenomic analysis suggests broad metabolic potential in extracellular symbionts of the bivalve Thyasira cf. gouldi Bonita McCuaig1, Lourdes Peña-Castillo1,2 and Suzanne C. Dufour1* Abstract Background: Next-generation sequencing has opened new avenues for studying metabolic capabilities of bacteria that cannot be cultured. Here, we provide a metagenomic description of chemoautotrophic gammaproteobacterial symbionts associated with Thyasira cf. gouldi, a sediment-dwelling bivalve from the family Thyasiridae. Thyasirid symbionts differ from those of other bivalves by being extracellular, and recent work suggests that they are capable of living freely in the environment. Results: Thyasira cf. gouldi symbionts appear to form mixed, non-clonal populations in the host, show no signs of genomic reduction and contain many genes that would only be useful outside the host, including flagellar and chemotaxis genes. The thyasirid symbionts may be capable of sulfur oxidation via both the sulfur oxidation and reverse dissimilatory sulfate reduction pathways, as observed in other bivalve symbionts. In addition, genes for hydrogen oxidation and dissimilatory nitrate reduction were found, suggesting varied metabolic capabilities under a range of redox conditions. The genes of the tricarboxylic acid cycle are also present, along with membrane bound sugar importer channels, suggesting that the bacteria may be mixotrophic. Conclusions: In this study, we have generated the first thyasirid symbiont genomic resources. In Thyasira cf. gouldi, symbiont populations appear non-clonal and encode genes for a plethora of metabolic capabilities; future work should examine whether symbiont heterogeneity and metabolic breadth, which have been shown in some intracellular chemosymbionts, are signatures of extracellular chemosymbionts in bivalves. -
Biodiversità Ed Evoluzione
Allma Mater Studiiorum – Uniiversiità dii Bollogna DOTTORATO DI RICERCA IN BIODIVERSITÀ ED EVOLUZIONE Ciclo XXIII Settore/i scientifico-disciplinare/i di afferenza: BIO - 05 A MOLECULAR PHYLOGENY OF BIVALVE MOLLUSKS: ANCIENT RADIATIONS AND DIVERGENCES AS REVEALED BY MITOCHONDRIAL GENES Presentata da: Dr Federico Plazzi Coordinatore Dottorato Relatore Prof. Barbara Mantovani Dr Marco Passamonti Esame finale anno 2011 of all marine animals, the bivalve molluscs are the most perfectly adapted for life within soft substrata of sand and mud. Sir Charles Maurice Yonge INDEX p. 1..... FOREWORD p. 2..... Plan of the Thesis p. 3..... CHAPTER 1 – INTRODUCTION p. 3..... 1.1. BIVALVE MOLLUSKS: ZOOLOGY, PHYLOGENY, AND BEYOND p. 3..... The phylum Mollusca p. 4..... A survey of class Bivalvia p. 7..... The Opponobranchia: true ctenidia for a truly vexed issue p. 9..... The Autobranchia: between tenets and question marks p. 13..... Doubly Uniparental Inheritance p. 13..... The choice of the “right” molecular marker in bivalve phylogenetics p. 17..... 1.2. MOLECULAR EVOLUTION MODELS, MULTIGENE BAYESIAN ANALYSIS, AND PARTITION CHOICE p. 23..... CHAPTER 2 – TOWARDS A MOLECULAR PHYLOGENY OF MOLLUSKS: BIVALVES’ EARLY EVOLUTION AS REVEALED BY MITOCHONDRIAL GENES. p. 23..... 2.1. INTRODUCTION p. 28..... 2.2. MATERIALS AND METHODS p. 28..... Specimens’ collection and DNA extraction p. 30..... PCR amplification, cloning, and sequencing p. 30..... Sequence alignment p. 32..... Phylogenetic analyses p. 37..... Taxon sampling p. 39..... Dating p. 43..... 2.3. RESULTS p. 43..... Obtained sequences i p. 44..... Sequence analyses p. 45..... Taxon sampling p. 45..... Maximum Likelihood p. 47..... Bayesian Analyses p. 50..... Dating the tree p. -
2014 Annual Report Santa Barbara Museum of Natural History 2014 Was an Exciting Year for the Museum and Sea Center
2014 ANNUAL REPORT SANTA BARBARA MUSEUM OF NATURAL HISTORY 2014 was an exciting year for the Museum and Sea Center. We had strong attendance at both campuses. The Sea Center had over 97,000 visitors last year, the highest on record and we are confident we will pass the 100,000 mark in 2015. Financially, we outperformed our 2014 budget, both on the revenue and on the expense side. And our endowment grew by almost $1 million last year. We unveiled our new tide pool installation at the Sea Center and we opened our Curiosity Lab at the Mission Canyon campus. Both of these new spaces are exciting and transformative peeks into our future. In September, we held our second Symposium on Human Origins and the scientists that came from all over the world to participate drew full houses at each of the two day sessions both at the Museum and downtown at the Lobero Theatre. A number of important collections were also gifted to the Museum. A butterfly collection comprising almost every species found here in California. Another collection consisting of 920 fossil ammonites was gifted to us. Three significant shell collections arrived as well as a number of important rare books that were gifted to the library. Numerous smaller collections also arrived which fill out our holdings. In March of 2014 we submitted our Master Plan and updated Conditional Use Permit application to the City of Santa Barbara; these were unanimously approved by the Planning Commission in early January of 2015 with Elisabeth Fowler, Chair HONORARY tremendous community support. -
A Phylogenetic Backbone for Bivalvia: an RNA-Seq Approach
A phylogenetic backbone for Bivalvia: an RNA-seq approach The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation González, Vanessa L., Sónia C. S. Andrade, Rüdiger Bieler, Timothy M. Collins, Casey W. Dunn, Paula M. Mikkelsen, John D. Taylor, and Gonzalo Giribet. 2015. “A phylogenetic backbone for Bivalvia: an RNA-seq approach.” Proceedings of the Royal Society B: Biological Sciences 282 (1801): 20142332. doi:10.1098/rspb.2014.2332. http:// dx.doi.org/10.1098/rspb.2014.2332. Published Version doi:10.1098/rspb.2014.2332 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:14065405 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA A phylogenetic backbone for Bivalvia: an rspb.royalsocietypublishing.org RNA-seq approach Vanessa L. Gonza´lez1,†,So´nia C. S. Andrade1,‡,Ru¨diger Bieler2, Timothy M. Collins3, Casey W. Dunn4, Paula M. Mikkelsen5, Research John D. Taylor6 and Gonzalo Giribet1 1 Cite this article: Gonza´lez VL, Andrade SCS, Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA Bieler R, Collins TM, Dunn CW, Mikkelsen PM, 2Integrative Research Center, Field Museum of Natural History, Chicago, IL 60605, USA Taylor JD, Giribet G. 2015 A phylogenetic 3Department of Biological Sciences, Florida International University, Miami, FL 33199, USA backbone for Bivalvia: an RNA-seq approach. -
Diversity of Benthic Marine Mollusks of the Strait of Magellan, Chile
ZooKeys 963: 1–36 (2020) A peer-reviewed open-access journal doi: 10.3897/zookeys.963.52234 DATA PAPER https://zookeys.pensoft.net Launched to accelerate biodiversity research Diversity of benthic marine mollusks of the Strait of Magellan, Chile (Polyplacophora, Gastropoda, Bivalvia): a historical review of natural history Cristian Aldea1,2, Leslie Novoa2, Samuel Alcaino2, Sebastián Rosenfeld3,4,5 1 Centro de Investigación GAIA Antártica, Universidad de Magallanes, Av. Bulnes 01855, Punta Arenas, Chile 2 Departamento de Ciencias y Recursos Naturales, Universidad de Magallanes, Chile 3 Facultad de Ciencias, Laboratorio de Ecología Molecular, Departamento de Ciencias Ecológicas, Universidad de Chile, Santiago, Chile 4 Laboratorio de Ecosistemas Marinos Antárticos y Subantárticos, Universidad de Magallanes, Chile 5 Instituto de Ecología y Biodiversidad, Santiago, Chile Corresponding author: Sebastián Rosenfeld ([email protected]) Academic editor: E. Gittenberger | Received 19 March 2020 | Accepted 6 June 2020 | Published 24 August 2020 http://zoobank.org/9E11DB49-D236-4C97-93E5-279B1BD1557C Citation: Aldea C, Novoa L, Alcaino S, Rosenfeld S (2020) Diversity of benthic marine mollusks of the Strait of Magellan, Chile (Polyplacophora, Gastropoda, Bivalvia): a historical review of natural history. ZooKeys 963: 1–36. https://doi.org/10.3897/zookeys.963.52234 Abstract An increase in richness of benthic marine mollusks towards high latitudes has been described on the Pacific coast of Chile in recent decades. This considerable increase in diversity occurs specifically at the beginning of the Magellanic Biogeographic Province. Within this province lies the Strait of Magellan, considered the most important channel because it connects the South Pacific and Atlantic Oceans. These characteristics make it an interesting area for marine research; thus, the Strait of Magellan has histori- cally been the area with the greatest research effort within the province. -
An Overview of Chemosynthetic Symbioses in Bivalves from the North Atlantic and Mediterranean Sea S
An overview of chemosynthetic symbioses in bivalves from the North Atlantic and Mediterranean Sea S. Duperron, S. M. Gaudron, C. Rodrigues, M. R. Cunha, C. Decker, K. Olu To cite this version: S. Duperron, S. M. Gaudron, C. Rodrigues, M. R. Cunha, C. Decker, et al.. An overview of chemosyn- thetic symbioses in bivalves from the North Atlantic and Mediterranean Sea. Biogeosciences, European Geosciences Union, 2013, 10 (5), pp.3241-3267. 10.5194/bg-10-3241-2013. hal-01542777 HAL Id: hal-01542777 https://hal.sorbonne-universite.fr/hal-01542777 Submitted on 20 Jun 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License EGU Journal Logos (RGB) Open Access Open Access Open Access Advances in Annales Nonlinear Processes Geosciences Geophysicae in Geophysics Open Access Open Access Natural Hazards Natural Hazards and Earth System and Earth System Sciences Sciences Discussions Open Access Open Access Atmospheric Atmospheric Chemistry Chemistry and Physics and Physics Discussions Open Access Open Access Atmospheric Atmospheric Measurement Measurement Techniques Techniques Discussions Open Access Biogeosciences, 10, 3241–3267, 2013 Open Access www.biogeosciences.net/10/3241/2013/ Biogeosciences doi:10.5194/bg-10-3241-2013 Biogeosciences Discussions © Author(s) 2013. -
16S Rdna-Based Phylogeny of Sulphur-Oxidising Bacterial Endosymbionts in Marine Bivalves from Cold-Seep Habitats
MARINE ECOLOGY PROGRESS SERIES Vol. 249: 39–51, 2003 Published March 10 Mar Ecol Prog Ser 16S rDNA-based phylogeny of sulphur-oxidising bacterial endosymbionts in marine bivalves from cold-seep habitats Johannes F. Imhoff1,*, Heiko Sahling2, Jörg Süling1, Thomas Kath1 1Institut für Meereskunde, Düsternbrooker Weg 20, 24105 Kiel, Germany 2GEOMAR Research Center for Marine Geoscience, Wischhofstraße 1–3, 24148 Kiel, Germany ABSTRACT: The phylogenetic relationship of sulphur-oxidising endosymbiotic bacteria from bivalves of the families Vesicomyidae (Calyptogena sp. C1, Calyptogena sp. C3), Solemyidae (Acharax sp.) and Thyasiridae (Conchocele sp.) from cold-seep habitats were determined by 16S rDNA nucleotide sequence analyses. The endosymbiotic bacteria form distinct groups within the gamma-Proteobacteria and are well separated from each other and from free-living sulphur- oxidising bacteria of the genera Beggiatoa, Halothiobacillus and Thiomicrospira. The endosymbiotic bacteria of Acharax sp. from cold seeps off Oregon, Indonesia and Pakistan have sequences highly similar to each other but quite distinct from other thiotrophic endosymbionts. This includes endosym- bionts from Solemya spp., to which they are distantly related. Symbiotic bacteria of Conchocele sp. from a cold seep in the Sea of Okhotsk are similar to those of Bathymodiolus thermophilus and related species, as shown by their overall sequence similarity and by signature sequences. The endosymbiotic bacteria of Calyptogena spp. from cold seeps off Oregon and Pakistan are closely related to those of other vesicomyids. Endosymbiont species found off Oregon corresponded to 2 different clusters of Calyptogena spp. symbionts in the same samples. The results corroborate the hypothesis of a monophyletic origin of the symbionts in vesicomyid clams, and support the existence of deeply branching groups in solemyid symbionts and of divergent lines and distribution for thyasirid symbionts. -
Velum (Bivalvia: Mollusca) (Chemoautotroph/Sulfur-Oxidizing Bacteria/Deep-Sea Hydrothermal Vents/Symbiosis) COLLEEN M
Proc. Nati. Acad. Sci. USA Vol. 85, pp. 7786-7789, October 1988 Microbiology Immunochemical localization of ribulose-1,5-bisphosphate carboxylase in the symbiont-containing gills of Solemya velum (Bivalvia: Mollusca) (chemoautotroph/sulfur-oxidizing bacteria/deep-sea hydrothermal vents/symbiosis) COLLEEN M. CAVANAUGH*, MARILYN S. ABBOTT*t, AND MARTEN VEENHUISt *Harvard University, The Biological Laboratories, 16 Divinity Avenue, Cambridge, MA 02138; tAnheuser-Busch Companies, Corporate Research and Development, Saint Louis, MO 63118; and *Laboratory of Electron Microscopy, University of Groningen, Biological Centre, Kerklaan 30, 9751 NN Haren, The Netherlands Communicated by Lawrence Bogorad, June 9, 1988 (receivedfor review March IS, 1988) ABSTRACT The distribution of the Calvin cycle enzyme set out to localize this enzyme in the clam tissue by immu- ribulose-1,5-bisphosphate carboxylase (RbuP2Case; EC 4.1.1.39) nochemical means. was examined by using two lmmunologkal methods in tissues of The RbuP2Case holoenzyme of vascular plants, green Solentya velum, an Atlantic coast bivalve containing putative algae, and most bacteria is a high molecular mass complex chemoautotrophic symbionts. Antibodies elicited by the purified (-550 kDa) composed of eight large subunits and eight small large subunit of RbuP2Case from tobacco (Nicotana tabacum) subunits, with molecular masses of 50-56 kDa and 11-15 cross-reacted on immunoblots with a protein ofsimilar molecular kDa, respectively (3, 4). The enzyme catalyzes both car- mass occurring in extracts ofthe symbiont-containing gill tissue of boxylation and oxygenation reactions by using ribulose S. velum. No cross-reactivity was detected in symbiont-free tissue 1,5-bisphosphate as a substrate. Although the function ofthe extracts.