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Distributions of Extinction Times from Fossil Ages and Tree Topologies: the Example of Some Mid-Permian Synapsid Extinctions Gilles Didier, Michel Laurin
Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier, Michel Laurin To cite this version: Gilles Didier, Michel Laurin. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions. 2021. hal-03258099v2 HAL Id: hal-03258099 https://hal.archives-ouvertes.fr/hal-03258099v2 Preprint submitted on 20 Sep 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier1 and Michel Laurin2 1 IMAG, Univ Montpellier, CNRS, Montpellier, France 2 CR2P (\Centre de Pal´eontologie { Paris"; UMR 7207), CNRS/MNHN/SU, Mus´eumNational d'Histoire Naturelle, Paris, France September 16, 2021 Abstract Given a phylogenetic tree that includes only extinct, or a mix of extinct and extant taxa, where at least some fossil data are available, we present a method to compute the distribution of the extinction time of a given set of taxa under the Fossilized-Birth-Death model. Our approach differs from the previous ones in that it takes into account (i) the possibility that the taxa or the clade considered may diversify before going extinct and (ii) the whole phylogenetic tree to estimate extinction times, whilst previous methods do not consider the diversification process and deal with each branch independently. -
Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha)
Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha) by Richard Kissel A thesis submitted in conformity with the requirements for the degree of doctor of philosophy Graduate Department of Ecology & Evolutionary Biology University of Toronto © Copyright by Richard Kissel 2010 Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha) Richard Kissel Doctor of Philosophy Graduate Department of Ecology & Evolutionary Biology University of Toronto 2010 Abstract Based on dental, cranial, and postcranial anatomy, members of the Permo-Carboniferous clade Diadectidae are generally regarded as the earliest tetrapods capable of processing high-fiber plant material; presented here is a review of diadectid morphology, phylogeny, taxonomy, and paleozoogeography. Phylogenetic analyses support the monophyly of Diadectidae within Diadectomorpha, the sister-group to Amniota, with Limnoscelis as the sister-taxon to Tseajaia + Diadectidae. Analysis of diadectid interrelationships of all known taxa for which adequate specimens and information are known—the first of its kind conducted—positions Ambedus pusillus as the sister-taxon to all other forms, with Diadectes sanmiguelensis, Orobates pabsti, Desmatodon hesperis, Diadectes absitus, and (Diadectes sideropelicus + Diadectes tenuitectes + Diasparactus zenos) representing progressively more derived taxa in a series of nested clades. In light of these results, it is recommended herein that the species Diadectes sanmiguelensis be referred to the new genus -
Distributions of Extinction Times from Fossil Ages and Tree Topologies: the Example of Some Mid-Permian Synapsid Extinctions
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.11.448028; this version posted June 11, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier1 and Michel Laurin2 1IMAG, Univ Montpellier, CNRS, Montpellier, France 2CR2P (“Centre de Recherches sur la Paléobiodiversité et les Paléoenvironnements”; UMR 7207), CNRS/MNHN/UPMC, Sorbonne Université, Muséum National d’Histoire Naturelle, Paris, France June 11, 2021 Abstract Given a phylogenetic tree of extinct and extant taxa with fossils where the only temporal infor- mation stands in the fossil ages, we devise a method to compute the distribution of the extinction time of a given set of taxa under the Fossilized-Birth-Death model. Our approach differs from the previous ones in that it takes into account the possibility that the taxa or the clade considered may diversify before going extinct, whilst previous methods just rely on the fossil recovery rate to estimate confidence intervals. We assess and compare our new approach with a standard previous one using simulated data. Results show that our method provides more accurate confidence intervals. This new approach is applied to the study of the extinction time of three Permo-Carboniferous synapsid taxa (Ophiacodontidae, Edaphosauridae, and Sphenacodontidae) that are thought to have disappeared toward the end of the Cisuralian, or possibly shortly thereafter. The timing of extinctions of these three taxa and of their component lineages supports the idea that a biological crisis occurred in the late Kungurian/early Roadian. -
Morphology and Evolutionary Significance of the Atlas−Axis Complex in Varanopid Synapsids
Morphology and evolutionary significance of the atlas−axis complex in varanopid synapsids NICOLÁS E. CAMPIONE and ROBERT R. REISZ Campione, N.E. and Reisz, R.R. 2011. Morphology and evolutionary significance of the atlas−axis complex in varanopid synapsids. Acta Palaeontologica Polonica 56 (4): 739–748. The atlas−axis complex has been described in few Palaeozoic taxa, with little effort being placed on examining variation of this structure within a small clade. Most varanopids, members of a clade of gracile synapsid predators, have well pre− served atlas−axes permitting detailed descriptions and examination of morphological variation. This study indicates that the size of the transverse processes on the axis and the shape of the axial neural spine vary among members of this clade. In particular, the small mycterosaurine varanopids possess small transverse processes that point posteroventrally, and the axial spine is dorsoventrally short, with a flattened dorsal margin in lateral view. The larger varanodontine varanopids have large transverse processes with a broad base, and a much taller axial spine with a rounded dorsal margin in lateral view. Based on outgroup comparisons, the morphology exhibited by the transverse processes is interpreted as derived in varanodontines, whereas the morphology of the axial spine is derived in mycterosaurines. The axial spine anatomy of Middle Permian South African varanopids is reviewed and our interpretation is consistent with the hypothesis that at least two varanopid taxa are present in South Africa, a region overwhelmingly dominated by therapsid synapsids and parareptiles. Key words: Synapsida, Varanopidae, Mycterosaurinae, Varanodontinae, atlas−axis complex, axial skeleton, Middle Permian, South Africa. -
Curriculum Vitae
CURRICULUM VITAE AMY C. HENRICI Collection Manager Section of Vertebrate Paleontology Carnegie Museum of Natural History 4400 Forbes Avenue Pittsburgh, Pennsylvania 15213-4080, USA Phone:(412)622-1915 Email: [email protected] BACKGROUND Birthdate: 24 September 1957. Birthplace: Pittsburgh. Citizenship: USA. EDUCATION B.A. 1979, Hiram College, Ohio (Biology) M.S. 1989, University of Pittsburgh, Pennsylvania (Geology) CAREER Carnegie Museum of Natural History (CMNH) Laboratory Technician, Section of Vertebrate Paleontology, 1979 Research Assistant, Section of Vertebrate Paleontology, 1980 Curatorial Assistant, Section of Vertebrate Paleontology, 1980-1984 Scientific Preparator, Section of Paleobotany, 1985-1986 Scientific Preparator, Section of Vertebrate Paleontology, 1985-2002 Acting Collection Manager/Scientific Preparator, 2003-2004 Collection Manager, 2005-present PALEONTOLOGICAL FIELD EXPERIENCE Late Pennsylvanian through Early Permian of Colorado, New Mexico and Utah (fish, amphibians and reptiles) Early Permian of Germany, Bromacker quarry (amphibians and reptiles) Triassic of New Mexico, Coelophysis quarry (Coelophysis and other reptiles) Upper Jurassic of Colorado (mammals and herps) Tertiary of Montana, Nevada, and Wyoming (mammals and herps) Pleistocene of West Virginia (mammals and herps) Lake sediment cores and lake sediment surface samples, Wyoming (pollen and seeds) PROFESSIONAL APPOINTMENTS Associate Editor, Society of Vertebrate Paleontology, 1998-2000. Research Associate in the Science Division, New Mexico Museum of Natural History and Science, 2007-present. PROFESSIONAL ASSOCIATIONS Society of Vertebrate Paleontology Paleontological Society LECTURES and TUTORIALS (Invited and public) 1994. Middle Eocene frogs from central Wyoming: ontogeny and taphonomy. California State University, San Bernardino 1994. Mechanical preparation of vertebrate fossils. California State University, San Bernardino 1994. Mechanical preparation of vertebrate fossils. University of Chicago 2001. -
Physical and Environmental Drivers of Paleozoic Tetrapod Dispersal Across Pangaea
ARTICLE https://doi.org/10.1038/s41467-018-07623-x OPEN Physical and environmental drivers of Paleozoic tetrapod dispersal across Pangaea Neil Brocklehurst1,2, Emma M. Dunne3, Daniel D. Cashmore3 &Jӧrg Frӧbisch2,4 The Carboniferous and Permian were crucial intervals in the establishment of terrestrial ecosystems, which occurred alongside substantial environmental and climate changes throughout the globe, as well as the final assembly of the supercontinent of Pangaea. The fl 1234567890():,; in uence of these changes on tetrapod biogeography is highly contentious, with some authors suggesting a cosmopolitan fauna resulting from a lack of barriers, and some iden- tifying provincialism. Here we carry out a detailed historical biogeographic analysis of late Paleozoic tetrapods to study the patterns of dispersal and vicariance. A likelihood-based approach to infer ancestral areas is combined with stochastic mapping to assess rates of vicariance and dispersal. Both the late Carboniferous and the end-Guadalupian are char- acterised by a decrease in dispersal and a vicariance peak in amniotes and amphibians. The first of these shifts is attributed to orogenic activity, the second to increasing climate heterogeneity. 1 Department of Earth Sciences, University of Oxford, South Parks Road, Oxford OX1 3AN, UK. 2 Museum für Naturkunde, Leibniz-Institut für Evolutions- und Biodiversitätsforschung, Invalidenstraße 43, 10115 Berlin, Germany. 3 School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, UK. 4 Institut -
The Many Faces of Synapsid Cranial Allometry
Paleobiology, 45(4), 2019, pp. 531–545 DOI: 10.1017/pab.2019.26 Article The many faces of synapsid cranial allometry Isaac W. Krone , Christian F. Kammerer, and Kenneth D. Angielczyk Abstract.—Previous studies of cranial shape have established a consistent interspecific allometric pattern relating the relative lengths of the face and braincase regions of the skull within multiple families of mam- mals. In this interspecific allometry, the facial region of the skull is proportionally longer than the braincase in larger species. The regularity and broad taxonomic occurrence of this allometric pattern suggests that it may have an origin near the base of crown Mammalia, or even deeper in the synapsid or amniote forerun- ners of mammals. To investigate the possible origins of this allometric pattern, we used geometric morpho- metric techniques to analyze cranial shape in 194 species of nonmammalian synapsids, which constitute a set of successive outgroups to Mammalia. We recovered a much greater diversity of allometric patterns within nonmammalian synapsids than has been observed in mammals, including several instances similar to the mammalian pattern. However, we found no evidence of the mammalian pattern within Theroce- phalia and nonmammalian Cynodontia, the synapsids most closely related to mammals. This suggests that the mammalian allometric pattern arose somewhere within Mammaliaformes, rather than within nonmammalian synapsids. Further investigation using an ontogenetic series of the anomodont Diictodon feliceps shows that the pattern of interspecific allometry within anomodonts parallels the ontogenetic trajectory of Diictodon. This indicates that in at least some synapsids, allometric patterns associated with ontogeny may provide a “path of least resistance” for interspecific variation, a mechanism that we suggest produces the interspecific allometric pattern observed in mammals. -
Estimating Diversification Rates from the Fossil Record
bioRxiv preprint doi: https://doi.org/10.1101/027599; this version posted September 25, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Estimating diversification rates from the fossil record Gilles Didier1, Marine Fau2 and Michel Laurin2 [email protected], Aix-Marseille Universit´e,CNRS, Centrale Marseille, I2M, UMR 7373, 13453 Marseille, France [email protected], [email protected], CR2P, Sorbonne Universit´es,CNRS/MNHN/UPMC, Mus´eumNational d'Histoire Naturelle, 75005 Paris, France Abstract Diversification rates are estimated from phylogenies, typically without fossils, except in paleonto- logical studies. By nature, rate estimations depend heavily on the time data provided in phylogenies, which are divergence times and (when used) fossil ages. Among these temporal data, fossil ages are by far the most precisely known (divergence times are inferences calibrated with fossils). We propose a method to compute the likelihood of a phylogenetic tree with fossils in which the only known time information is the fossil ages. Testing our approach on simulated data shows that the maximum likelihood rate estimates from the phylogenetic tree shape and the fossil dates are almost as accurate as the ones obtained by taking into account all the data, including the divergence times. Moreover they are substantially more accurate than the estimates obtained only from the exact divergence times (without taking into account the fossil record). Keywords: speciation rate, extinction rate, fossil ages, maximum likelihood estimation 1 Introduction The history of biodiversity, including evolutionary radiations and mass extinction events, is a central topic of macroevolutionary studies (see for instance Santini et al., 2013; Sidor et al., 2013; Benton et al., 2014, and other works from these authors). -
A New Basal Sphenacodontid Synapsid from the Late Carboniferous of the Saar−Nahe Basin, Germany
A new basal sphenacodontid synapsid from the Late Carboniferous of the Saar−Nahe Basin, Germany JÖRG FRÖBISCH, RAINER R. SCHOCH, JOHANNES MÜLLER, THOMAS SCHINDLER, and DIETER SCHWEISS Fröbisch, J., Schoch, R.R., Müller, J., Schindler, T., and Schweiss, D. 2011. A new basal sphenacodontid synapsid from the Late Carboniferous of the Saar−Nahe Basin, Germany. Acta Palaeontologica Polonica 56 (1): 113–120. A new basal sphenacodontid synapsid, represented by an anterior portion of a mandible, demonstrates for the first time the presence of amniotes in the largest European Permo−Carboniferous basin, the Saar−Nahe Basin. The new taxon, Cryptovenator hirschbergeri gen. et sp. nov., is autapomorphic in the extreme shortness and robustness of the lower jaw, with moderate heterodonty, including the absence of a greatly reduced first tooth and only a slight caniniform develop− ment of the second and third teeth. Cryptovenator shares with Dimetrodon, Sphenacodon, and Ctenospondylus, but nota− bly not with Secodontosaurus, enlarged canines and a characteristic teardrop outline of the marginal teeth in lateral view, possession of a deep symphyseal region, and a strongly concave dorsal margin of the dentary. The new find shows that sphenacodontids were present in the Saar−Nahe Basin by the latest Carboniferous, predating the record of sphenacodontid tracks from slightly younger sediments in this region. Key words: Synapsida, Sphenacodontidae, Carboniferous, Saar−Nahe Basin, Germany. Jörg Fröbisch [[email protected]], Department of Geology, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605, USA and [joerg.froebisch@mfn−berlin.de], Museum für Naturkunde Leibniz−Institut für Evolu− tions− und Biodiversitätsforschung an der Humboldt−Universität zu Berlin, Invalidenstr. -
Paleo-The Story of Life
PALEO: THE STORY OF LIFE Life on Earth has not always existed as it currently does. The fact that life began on Earth in the first place is miraculous due to the environmental factors needed for its beginnings and sustainability. The relentless pursuit of life over billions of years from small living molecules to complex creatures roaming, flying and swimming throughout the Earth has culminated into the current state of life’s existence as we know it on the planet we call home. Paleo: The Story of Life is a 3,000-square-foot exhibit, spanning 4.6 billion years in scope. The exhibit presents casts of 128 rare fossils, including Lucy, Archaeopteryx and T rex, among many others. Drawn from the world’s foremost fossil collections, the Paleo exhibit showcases casts of rare fossils from the Americas, Europe, Asia, Africa and Australia – skeletons, skulls, claws and eggs gathered from prestigious museums, including the Smithsonian Institution, American Museum of Natural History, Royal Ontario Museum and Carnegie Museum, among others. Rarely available for viewing outside of their respective museums, these compelling artifacts are presented exclusively in Paleo: The Story of Life. Fossils range from the earliest invertebrate marine life through the Triassic, Jurassic and Cretaceous dinosaurs to mammals and prehistoric humans. Paleo: The Story of Life explores the comprehensive story of prehistoric life on Earth. The Paleo exhibit is a visiting exhibit and will be on display through Thursday, May 31, 2018. It is located in the Horowitz Traveling Exhibit Area. The MOST presents Paleo: The Story of Life in association with the International Museum Institute, Inc. -
Catalogueoftypes22brun.Pdf
UNIVERSITY OF ILLINOIS LIBRARY AT URBANACHAMPAIGN GEOLOGY JUL 7 1995 NOTICE: Return or renew all Library Materials! The Minimum Fee for •adi Lost Book is $50.00. The person charging this material is responsible for its return to the library from which it was withdrawn on or before the Latest Date stamped below. Thett, mutilation, and underlining of books are reasons for discipli- nary action and may result in dismissal from the University. To renew call Telephone Center, 333-8400 UNIVERSITY OF ILLINOIS LIBRARY AT URBANA-CHAMPAIGN &S.19J6 L161—O-1096 'cuLUuy LIBRARY FIELDIANA Geology NEW SERIES, NO. 22 A Catalogue of Type Specimens of Fossil Vertebrates in the Field Museum of Natural History. Classes Amphibia, Reptilia, Aves, and Ichnites John Clay Bruner October 31, 1991 Publication 1430 PUBLISHED BY FIELD MUSEUM OF NATURAL HISTORY Information for Contributors to Fieldiana General: Fieldiana is primarily a journal for Field Museum staff members and research associates, althouj. manuscripts from nonaffiliated authors may be considered as space permits. The Journal carries a page charge of $65.00 per printed page or fraction thereof. Payment of at least 50% of pag< charges qualifies a paper for expedited processing, which reduces the publication time. Contributions from staff, researcl associates, and invited authors will be considered for publication regardless of ability to pay page charges, however, the ful charge is mandatory for nonaffiliated authors of unsolicited manuscripts. Three complete copies of the text (including titl< page and abstract) and of the illustrations should be submitted (one original copy plus two review copies which may b machine-copies). -
Pelycosauria Y Therapsida
Pelycosauria y Therapsida Los amniotos pueden dividirse en dos líneas principales: Los synapsidos (de quienes provienen los mamíferos) y los Sauropsidos (de quienes provienen “rep;les” y aves). Los Synápsidos poseen una apertura (fenestra) en el cráneo, detrás del ojo, debajo de la unión entre los huesos postorbital y escamoso. Comparten un ancestro en común más reciente con un mamífero que con una lagar;ja. Filogené;camente, no pertenecen a rep;lia, pero a la mayoría se les conoce como “rep;les semejantes a mamíferos” Anapsida Synapsida Diapsida “Parapsida” o “Euryapsida” (Diapsida modificados) SYNAPSIDA: -COMPARTEN UN ACMR CON MAMÍFEROS QUE CON REPTILES -FENESTRA TEMPORAL, BAJO POSTORBITAL-ESCAMOSO -REGION OCCIPITAL POSTERIORMENTE INCLINADA (NO VERTICAL) -SUPRATEMPORAL SE CONECTA AL POSTORBITAL PETROLACOSAURUS ARCHAEOTHYRIS (synapsida) -CENTRALE MEDIAL (MC) BIEN DESARROLLADO EN EL TARSO -PRESENCIA DE DOS HUESOS CORONOIDES (LADO MEDIAL MANDÍBULA) Tradicionalmente se discuten cuatro “tipos fundamnetales” de synapsidos, que en efecto son grupos sucesivamente sucesivamente anidados “Pelycosaurios” (parafilético, se usa para hablar de synapsidos basales) Carbonífero Superior- Terápsidos. Pérmico-Triásico Pérmico. Muy “reptilianos” aún Modificaciones craneales y posturales importantes Cynodontes. Pérmico superior, Triásico Mamíferos. Triásico Muy similares a mamíferos Oído interno tres huesos Dinastías synapsidas Meg Dynasty 1: Pelicosaurios del Pérmico inferior Meg Dynasty 2: Terápsidos del Pérmico superior-Triásico inferior Meg Dynasty 3: Mamíferos del Cenozoico Los primeros synápsidos (basales) se conocen colectivamente como un grupo “parafilético”, los Pelycosaurios (P en la figura) que excluyen a sus descendientes Terápsidos. Los pelycosaurios presentan abundantes dientes en el paladar. Reconstruc;on of Pangaea showing anteosaurid dinocephalians and platyoposaurid temnospondyles during the Middle Permian. Probable dispersal routes are indicated by red arrows.