Desert Pupfish Recovery Plan
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Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Monitoring and Understanding Toxic Cyanobacteria and Cochlodinium Polykrikoides Blooms in Suffolk County
MONITORING AND UNDERSTANDING TOXIC CYANOBACTERIA AND COCHLODINIUM POLYKRIKOIDES BLOOMS IN SUFFOLK COUNTY A FINAL REPORT BY CHRISTOPHER J. GOBLER, STONY BROOK UNIVERSITY SUBMITTED SEPTEMBER 2013 REVISED MAY 2014 1 TABLE OF CONTENTS: Executive Summary……………………………………………………………pages 3- 6 Task 1. – Literature and Regulatory Review…………………………………pages 7 - 14 Task 2. –Summer monitoring of freshwater bathing beach lakes in Suffolk County. Suffolk County Bathing Beaches………………………………….…………pages 15 - 16 Task 3. Seasonal monitoring the most toxic lakes in Suffolk County…..……pages 17 - 25 Task 4. Cyanotoxin findings and final report………………………...…………..pages 26 Task 5 & 6. Assess the ability of Cochlodinium polykrikoides to form cysts; Quantify the production and densities of Cochlodinium polykrikoides cysts before, during and after blooms………………………………………………………………..………pages 27 - 57 Task 7. Assess the temperature tolerance of Cochlodinium polykrikoides….pages 58 - 61 Task 8. Assess the mechanism of toxicity of Cochlodinium polykrikoides....pages 62 - 93 Task 9. Explore the vulnerability of Suffolk County fish populations to Cochlodinium polykrikoides………………………………………………………...………pages 94 - 113 Task 10. Prepare a final report regarding Cochlodinium polykrikoides results….pages 114 2 EXECUTIVE SUMMARY This project, Monitoring and Understanding Toxic Cyanobacteria and Cochlodinium polykrikoides Blooms in Suffolk County, was funded by Suffolk County Capital Project 8224, Harmful Algal Blooms, and was initiated to address ongoing blooms of toxic cyanobacteria and Cochlodinium polykrikoides in Suffolk County waters. Cyanobacteria Cyanobacteria, also known as blue-green algae, are microscopic organisms found in both marine and fresh water environments. Under favorable conditions of sunlight, temperature, and nutrient concentrations, cyanobacteria can form massive blooms that discolor the water and often result in a scums and floating mats on the water’s surface. -
Geometric Morphometric Comparison of Abu Mullet, Planiliza Abu (Heckel, 1843) Populations in Bushehr Basin, Iran
Tanzania Journal of Science 47(1): 1-9, 2021 ISSN 0856-1761, e-ISSN 2507-7961 © College of Natural and Applied Sciences, University of Dar es Salaam, 2021 Geometric Morphometric Comparison of Abu Mullet, Planiliza abu (Heckel, 1843) Populations in Bushehr Basin, Iran Fatemeh Shabaninejad1, Yazdan Keivany1* and Dara Bagheri2 1Department of Natural Resources (Fisheries Division), Isfahan University of Technology, Isfahan, 84156-83111, Iran 2Department of Fisheries, Faculty of Marine Science and Technology, Persian Gulf University, P. O. Box 75615-415 Bushehr, Iran Co-authors’ e-mails: [email protected] (Shabaninejad); [email protected]; [email protected] (Bagheri) *Corresponding author, e-mail addresses: [email protected]; [email protected] Received 24 Oct 2020, Revised 21 Dec 2020, Accepted 28 Dec 2020, Published Feb 2021 Abstract Many fish behavior and habitats could be defined based on the fish morphology, thus, using the fish body shape, in addition to its genetic characteristics, could be used to infer the type of fish habitat and its characteristics. This study aimed to compare the body shapes of five populations of abu mullet, Planiliza abu (Heckel, 1843), in Bushehr basin using geometric morphometric method. Some 162 specimens from Hendijan, Genaveh, Helleh, Kaki and Mond rivers were used. Three morphometric characters, total length (TL), fork length (FL) and standard length (SL) were measured. Samples were photographed from the left side, then 18 landmarks were digitized using ImageJ software. Data obtained from Procrustes were analyzed by multivariate analysis using PCA and CVA. The results of PCA analysis showed significant differences between Kaki and other populations (P < 0.0001). -
Revised Stratigraphy of Neogene Strata in the Cocinetas Basin, La Guajira, Colombia
Swiss J Palaeontol (2015) 134:5–43 DOI 10.1007/s13358-015-0071-4 Revised stratigraphy of Neogene strata in the Cocinetas Basin, La Guajira, Colombia F. Moreno • A. J. W. Hendy • L. Quiroz • N. Hoyos • D. S. Jones • V. Zapata • S. Zapata • G. A. Ballen • E. Cadena • A. L. Ca´rdenas • J. D. Carrillo-Bricen˜o • J. D. Carrillo • D. Delgado-Sierra • J. Escobar • J. I. Martı´nez • C. Martı´nez • C. Montes • J. Moreno • N. Pe´rez • R. Sa´nchez • C. Sua´rez • M. C. Vallejo-Pareja • C. Jaramillo Received: 25 September 2014 / Accepted: 2 February 2015 / Published online: 4 April 2015 Ó Akademie der Naturwissenschaften Schweiz (SCNAT) 2015 Abstract The Cocinetas Basin of Colombia provides a made exhaustive paleontological collections, and per- valuable window into the geological and paleontological formed 87Sr/86Sr geochronology to document the transition history of northern South America during the Neogene. from the fully marine environment of the Jimol Formation Two major findings provide new insights into the Neogene (ca. 17.9–16.7 Ma) to the fluvio-deltaic environment of the history of this Cocinetas Basin: (1) a formal re-description Castilletes (ca. 16.7–14.2 Ma) and Ware (ca. 3.5–2.8 Ma) of the Jimol and Castilletes formations, including a revised formations. We also describe evidence for short-term pe- contact; and (2) the description of a new lithostratigraphic riodic changes in depositional environments in the Jimol unit, the Ware Formation (Late Pliocene). We conducted and Castilletes formations. The marine invertebrate fauna extensive fieldwork to develop a basin-scale stratigraphy, of the Jimol and Castilletes formations are among the richest yet recorded from Colombia during the Neogene. -
Endangered Species
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
Relation of Desert Pupfish Abundance to Selected Environmental Variables
Environmental Biology of Fishes (2005) 73: 97–107 Ó Springer 2005 Relation of desert pupfish abundance to selected environmental variables in natural and manmade habitats in the Salton Sea basin Barbara A. Martin & Michael K. Saiki U.S. Geological Survey, Biological Resources Division, Western Fisheries Research Center-Dixon Duty Station, 6924 Tremont Road, Dixon, CA 95620, U.S.A. (e-mail: [email protected]) Received 6 April 2004 Accepted 12 October 2004 Key words: species assemblages, predation, water quality, habitat requirements, ecological interactions, endangered species Synopsis We assessed the relation between abundance of desert pupfish, Cyprinodon macularius, and selected biological and physicochemical variables in natural and manmade habitats within the Salton Sea Basin. Field sampling in a natural tributary, Salt Creek, and three agricultural drains captured eight species including pupfish (1.1% of the total catch), the only native species encountered. According to Bray– Curtis resemblance functions, fish species assemblages differed mostly between Salt Creek and the drains (i.e., the three drains had relatively similar species assemblages). Pupfish numbers and environmental variables varied among sites and sample periods. Canonical correlation showed that pupfish abundance was positively correlated with abundance of western mosquitofish, Gambusia affinis, and negatively correlated with abundance of porthole livebearers, Poeciliopsis gracilis, tilapias (Sarotherodon mossambica and Tilapia zillii), longjaw mudsuckers, Gillichthys mirabilis, and mollies (Poecilia latipinna and Poecilia mexicana). In addition, pupfish abundance was positively correlated with cover, pH, and salinity, and negatively correlated with sediment factor (a measure of sediment grain size) and dissolved oxygen. Pupfish abundance was generally highest in habitats where water quality extremes (especially high pH and salinity, and low dissolved oxygen) seemingly limited the occurrence of nonnative fishes. -
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES Tables STEPHEN T. ROSS University of California Press Berkeley Los Angeles London © 2013 by The Regents of the University of California ISBN 978-0-520-24945-5 uucp-ross-book-color.indbcp-ross-book-color.indb 1 44/5/13/5/13 88:34:34 AAMM uucp-ross-book-color.indbcp-ross-book-color.indb 2 44/5/13/5/13 88:34:34 AAMM TABLE 1.1 Families Composing 95% of North American Freshwater Fish Species Ranked by the Number of Native Species Number Cumulative Family of species percent Cyprinidae 297 28 Percidae 186 45 Catostomidae 71 51 Poeciliidae 69 58 Ictaluridae 46 62 Goodeidae 45 66 Atherinopsidae 39 70 Salmonidae 38 74 Cyprinodontidae 35 77 Fundulidae 34 80 Centrarchidae 31 83 Cottidae 30 86 Petromyzontidae 21 88 Cichlidae 16 89 Clupeidae 10 90 Eleotridae 10 91 Acipenseridae 8 92 Osmeridae 6 92 Elassomatidae 6 93 Gobiidae 6 93 Amblyopsidae 6 94 Pimelodidae 6 94 Gasterosteidae 5 95 source: Compiled primarily from Mayden (1992), Nelson et al. (2004), and Miller and Norris (2005). uucp-ross-book-color.indbcp-ross-book-color.indb 3 44/5/13/5/13 88:34:34 AAMM TABLE 3.1 Biogeographic Relationships of Species from a Sample of Fishes from the Ouachita River, Arkansas, at the Confl uence with the Little Missouri River (Ross, pers. observ.) Origin/ Pre- Pleistocene Taxa distribution Source Highland Stoneroller, Campostoma spadiceum 2 Mayden 1987a; Blum et al. 2008; Cashner et al. 2010 Blacktail Shiner, Cyprinella venusta 3 Mayden 1987a Steelcolor Shiner, Cyprinella whipplei 1 Mayden 1987a Redfi n Shiner, Lythrurus umbratilis 4 Mayden 1987a Bigeye Shiner, Notropis boops 1 Wiley and Mayden 1985; Mayden 1987a Bullhead Minnow, Pimephales vigilax 4 Mayden 1987a Mountain Madtom, Noturus eleutherus 2a Mayden 1985, 1987a Creole Darter, Etheostoma collettei 2a Mayden 1985 Orangebelly Darter, Etheostoma radiosum 2a Page 1983; Mayden 1985, 1987a Speckled Darter, Etheostoma stigmaeum 3 Page 1983; Simon 1997 Redspot Darter, Etheostoma artesiae 3 Mayden 1985; Piller et al. -
Three New Pupfish Species, Cyprinodon (Teleostei, Cyprinodontidae), from Chihuahua, México, and Arizona, USA Author(S): W
Three New Pupfish Species, Cyprinodon (Teleostei, Cyprinodontidae), from Chihuahua, México, and Arizona, USA Author(s): W. L. Minckley, Robert Rush Miller and Steven Mark Norris Source: Copeia, Vol. 2002, No. 3 (Aug. 15, 2002), pp. 687-705 Published by: American Society of Ichthyologists and Herpetologists (ASIH) Stable URL: http://www.jstor.org/stable/1448150 . Accessed: 23/07/2014 15:57 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp . JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. American Society of Ichthyologists and Herpetologists (ASIH) is collaborating with JSTOR to digitize, preserve and extend access to Copeia. http://www.jstor.org This content downloaded from 128.123.44.23 on Wed, 23 Jul 2014 15:57:21 PM All use subject to JSTOR Terms and Conditions Copeia,2002(3), pp. 687-705 Three New Pupfish Species, Cyprinodon(Teleostei, Cyprinodontidae), from Chihuahua, Mexico, and Arizona, USA W. L. MINCKLEY,ROBERT RUSH MILLER,AND STEVENMARK NORRIS Three new species of Cyprinodon(Teleostei, Cyprinodontidae)are described,each long recognized as distinct. Cyprinodonpisteri occupies a varietyof systems and hab- itats in the Lago de Guzmin complex basin in northern Chihuahua,Mexico. It is distinguishedby its dusky to black dorsal fin and narrowor inconspicuousterminal bar on the caudal fin in mature males. -
Distribution of Amargosa River Pupfish (Cyprinodon Nevadensis Amargosae) in Death Valley National Park, CA
California Fish and Game 103(3): 91-95; 2017 Distribution of Amargosa River pupfish (Cyprinodon nevadensis amargosae) in Death Valley National Park, CA KRISTEN G. HUMPHREY, JAMIE B. LEAVITT, WESLEY J. GOLDSMITH, BRIAN R. KESNER, AND PAUL C. MARSH* Native Fish Lab at Marsh & Associates, LLC, 5016 South Ash Avenue, Suite 108, Tempe, AZ 85282, USA (KGH, JBL, WJG, BRK, PCM). *correspondent: [email protected] Key words: Amargosa River pupfish, Death Valley National Park, distribution, endangered species, monitoring, intermittent streams, range ________________________________________________________________________ Amargosa River pupfish (Cyprinodon nevadensis amargosae), is one of six rec- ognized subspecies of Amargosa pupfish (Miller 1948) and survives in waters embedded in a uniquely harsh environment, the arid and hot Mojave Desert (Jaeger 1957). All are endemic to the Amargosa River basin of southern California and Nevada (Moyle 2002). Differing from other spring-dwelling subspecies of Amargosa pupfish (Cyprinodon ne- vadensis), Amargosa River pupfish is riverine and the most widely distributed, the extent of which has been underrepresented prior to this study (Moyle et al. 2015). Originating on Pahute Mesa, Nye County, Nevada, the Amargosa River flows intermittently, often under- ground, south past the towns of Beatty, Shoshone, and Tecopa and through the Amargosa River Canyon before turning north into Death Valley National Park and terminating at Badwater Basin (Figure 1). Amargosa River pupfish is data deficient with a distribution range that is largely unknown. The species has been documented in Tecopa Bore near Tecopa, Inyo County, CA (Naiman 1976) and in the Amargosa River Canyon, Inyo and San Bernardino Counties, CA (Williams-Deacon et al. -
The Effects of Introduced Tilapias on Native Biodiversity
AQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS Aquatic Conserv: Mar. Freshw. Ecosyst. 15: 463–483 (2005) Published online in Wiley InterScience (www.interscience.wiley.com). DOI: 10.1002/aqc.699 The effects of introduced tilapias on native biodiversity GABRIELLE C. CANONICOa,*, ANGELA ARTHINGTONb, JEFFREY K. MCCRARYc,d and MICHELE L. THIEMEe a Sustainable Development and Conservation Biology Program, University of Maryland, College Park, Maryland, USA b Centre for Riverine Landscapes, Faculty of Environmental Sciences, Griffith University, Australia c University of Central America, Managua, Nicaragua d Conservation Management Institute, College of Natural Resources, Virginia Tech, Blacksburg, Virginia, USA e Conservation Science Program, World Wildlife Fund, Washington, DC, USA ABSTRACT 1. The common name ‘tilapia’ refers to a group of tropical freshwater fish in the family Cichlidae (Oreochromis, Tilapia, and Sarotherodon spp.) that are indigenous to Africa and the southwestern Middle East. Since the 1930s, tilapias have been intentionally dispersed worldwide for the biological control of aquatic weeds and insects, as baitfish for certain capture fisheries, for aquaria, and as a food fish. They have most recently been promoted as an important source of protein that could provide food security for developing countries without the environmental problems associated with terrestrial agriculture. In addition, market demand for tilapia in developed countries such as the United States is growing rapidly. 2. Tilapias are well-suited to aquaculture because they are highly prolific and tolerant to a range of environmental conditions. They have come to be known as the ‘aquatic chicken’ because of their potential as an affordable, high-yield source of protein that can be easily raised in a range of environments } from subsistence or ‘backyard’ units to intensive fish hatcheries. -
Digenean Trematodes of Fishes from Deep-Sea Areas Off the Pacific Coast of Northern Honshu, Japan
Deep-sea Fauna and Pollutants off Pacifi c Coast of Northern Japan, edited by T. Fujita, National Museum of Nature and Science Monographs, No. 39, pp. 25-37, 2009 Digenean Trematodes of Fishes from Deep-sea Areas off the Pacifi c Coast of Northern Honshu, Japan Toshiaki Kuramochi Department of Zoology, National Museum of Nature and Science, 3̶23̶1 Hyakunincho, Shinjuku-ku, Tokyo, 169̶0073 Japan E-mail: [email protected] Abstract: Thirty-two species plus nine unidentifi ed forms of digenean trematodes from 10 families, Bucepha- lidae, Fellodistomidae, Lepocreadiidae, Acanthocolpidae, Opecoelidae, Zoogonidae, Hemiuridae, Accacoeli- dae, Derogenidae and Lecithasteridae were recognized from 31 species of fi shes collected in deep-sea areas off the Pacifi c coast of northern Honshu, Japan. They are listed and several taxonomic and zoogeographic re- marks are given. A new combination, Tellervotrema katadara is also proposed. Key words: fi sh parasites, Digenea, deep-sea fi shes, the Pacifi c coast, Japan Introduction “Study on Deep-Sea Fauna and Conservation of Deep-Sea Ecosystem” organized by the Na- tional Museum of Nature and Science, Tokyo (NSMT) has been conducted since 1993. For dige- nean parasites of fi shes, Machida and Kamegai (1997) reported 22 species of fi sh digeneans, in- cluding two new species, from deep-sea fi shes caught in Suruga Bay, off the Pacifi c coast of central Japan, as the fi rst phase of the investigation, followed by Kuramochi (2001) which recorded 12 species from anguilliform and gadiform fi shes from deep-sea areas of Tosa Bay off the Pacifi c coast of western Japan as the second phase and by Kuramochi (2005) which recorded 14 species from fi shes caught in deep-sea area off the Ryukyu Islands, the East China Sea, southern Japan. -
Fishes As a Template for Reticulate Evolution
University of Arkansas, Fayetteville ScholarWorks@UARK Theses and Dissertations 12-2016 Fishes as a Template for Reticulate Evolution: A Case Study Involving Catostomus in the Colorado River Basin of Western North America Max Russell Bangs University of Arkansas, Fayetteville Follow this and additional works at: http://scholarworks.uark.edu/etd Part of the Evolution Commons, Molecular Biology Commons, and the Terrestrial and Aquatic Ecology Commons Recommended Citation Bangs, Max Russell, "Fishes as a Template for Reticulate Evolution: A Case Study Involving Catostomus in the Colorado River Basin of Western North America" (2016). Theses and Dissertations. 1847. http://scholarworks.uark.edu/etd/1847 This Dissertation is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of ScholarWorks@UARK. For more information, please contact [email protected], [email protected]. Fishes as a Template for Reticulate Evolution: A Case Study Involving Catostomus in the Colorado River Basin of Western North America A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology by Max Russell Bangs University of South Carolina Bachelor of Science in Biological Sciences, 2009 University of South Carolina Master of Science in Integrative Biology, 2011 December 2016 University of Arkansas This dissertation is approved for recommendation to the Graduate Council. _____________________________________ Dr. Michael E. Douglas Dissertation Director _____________________________________ ____________________________________ Dr. Marlis R. Douglas Dr. Andrew J. Alverson Dissertation Co-Director Committee Member _____________________________________ Dr. Thomas F. Turner Ex-Officio Member Abstract Hybridization is neither simplistic nor phylogenetically constrained, and post hoc introgression can have profound evolutionary effects.