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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Oscillatoriales, Microcoleaceae), Nuevo Reporte Para El Perú
Montoya et al.: Diversidad fenotípica de la cianobacteria Pseudophormidium tenue (Oscillatoriales, Microcoleaceae), nuevo reporte para el Perú Arnaldoa 24 (1): 369 - 382, 2017 ISSN: 1815-8242 (edición impresa) http://doi.org/10.22497/arnaldoa.241.24119 ISSN: 2413-3299 (edición online) Diversidad fenotípica de la cianobacteria Pseudophormidium tenue (Oscillatoriales, Microcoleaceae), nuevo reporte para el Perú Phenotypic diversity of the cyanobacterium Pseudo- phormidium tenue (Oscillatoriales, Microcoleaceae), new record for Peru Haydee Montoya T., José Gómez C., Mauro Mariano A., Enoc Jara P., Egma Mayta H., Mario Benavente P. Museo de Historia Natural, Departamento de Simbiosis Vegetal, UNMSM. Av. Arenales 1256. Apartado 14-0434. Lima 14, PERÚ. Instituto de Investigación de Ciencias Biológicas, Facultad de CC. Biológicas, UNMSM [email protected], [email protected], [email protected] [email protected] 24 (1): Enero - Junio, 2017 369 Este es un artículo de acceso abierto bajo la licencia CC BY-NC 4.0: https://creativecommons.org/licenses/by-nc/4.0/ Montoya et al.: Diversidad fenotípica de la cianobacteria Pseudophormidium tenue (Oscillatoriales, Microcoleaceae), nuevo reporte para el Perú Recibido: 20-I-2017; Aceptado: 15-III-2017; Publicado: VI-2017; Edición online: 05-VI-2017 Resumen Los ecosistemas desérticos costeros tropicales están distribuidos ampliamente en el oeste de Sudamérica. No obstante las tierras áridas de esta región, la disponibilidad hídrica de la humedad proveniente de las neblinas a nivel del océano Pacífico acarreadas hacia las colinas (lomas) y las garúas anuales invernales fluctuantes favorecen el desarrollo de comunidades cianobacteriales extremas. El área de evaluación fue las Lomas de Pachacámac, al sur de Lima, y las colecciones cianobacteriales estándar (costras, biofilms o matas terrestres) fueron realizadas irregularmente en 1995 y 2012. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Characteristic Microbiomes Correlate with Polyphosphate Accumulation of Marine Sponges in South China Sea Areas
microorganisms Article Characteristic Microbiomes Correlate with Polyphosphate Accumulation of Marine Sponges in South China Sea Areas 1 1, 1 1 2, 1,3, Huilong Ou , Mingyu Li y, Shufei Wu , Linli Jia , Russell T. Hill * and Jing Zhao * 1 College of Ocean and Earth Science of Xiamen University, Xiamen 361005, China; [email protected] (H.O.); [email protected] (M.L.); [email protected] (S.W.); [email protected] (L.J.) 2 Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, Baltimore, MD 21202, USA 3 Xiamen City Key Laboratory of Urban Sea Ecological Conservation and Restoration (USER), Xiamen University, Xiamen 361005, China * Correspondence: [email protected] (J.Z.); [email protected] (R.T.H.); Tel.: +86-592-288-0811 (J.Z.); Tel.: +(410)-234-8802 (R.T.H.) The author contributed equally to the work as co-first author. y Received: 24 September 2019; Accepted: 25 December 2019; Published: 30 December 2019 Abstract: Some sponges have been shown to accumulate abundant phosphorus in the form of polyphosphate (polyP) granules even in waters where phosphorus is present at low concentrations. But the polyP accumulation occurring in sponges and their symbiotic bacteria have been little studied. The amounts of polyP exhibited significant differences in twelve sponges from marine environments with high or low dissolved inorganic phosphorus (DIP) concentrations which were quantified by spectral analysis, even though in the same sponge genus, e.g., Mycale sp. or Callyspongia sp. PolyP enrichment rates of sponges in oligotrophic environments were far higher than those in eutrophic environments. -
Planktothrix Agardhii É a Mais Comum
Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters Catarina Isabel Prata Pereira Leitão Churro Doutoramento em Biologia Departamento Biologia 2015 Orientador Vitor Manuel de Oliveira e Vasconcelos, Professor Catedrático Faculdade de Ciências iv FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters The research presented in this thesis was supported by the Portuguese Foundation for Science and Technology (FCT, I.P.) national funds through the project PPCDT/AMB/67075/2006 and through the individual Ph.D. research grant SFRH/BD65706/2009 to Catarina Churro co-funded by the European Social Fund (Fundo Social Europeu, FSE), through Programa Operacional Potencial Humano – Quadro de Referência Estratégico Nacional (POPH – QREN) and Foundation for Science and Technology (FCT). The research was performed in the host institutions: National Institute of Health Dr. Ricardo Jorge (INSA, I.P.), Lisboa; Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), Porto and Centre for Microbial Resources (CREM - FCT/UNL), Caparica that provided the laboratories, materials, regents, equipment’s and logistics to perform the experiments. v FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters vi FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters ACKNOWLEDGMENTS I would like to express my gratitude to my supervisor Professor Vitor Vasconcelos for accepting to embark in this research and supervising this project and without whom this work would not be possible. I am also greatly thankful to my co-supervisor Elisabete Valério for the encouragement in pursuing a graduate program and for accompanying me all the way through it. -
Phycogeography of Freshwater Phytoplankton: Traditional Knowledge and New Molecular Tools
Hydrobiologia (2016) 764:3–27 DOI 10.1007/s10750-015-2259-4 PHYTOPLANKTON & SPATIAL GRADIENTS Review Paper Phycogeography of freshwater phytoplankton: traditional knowledge and new molecular tools Judit Padisa´k • Ga´bor Vasas • Ga´bor Borics Received: 29 November 2014 / Revised: 6 March 2015 / Accepted: 14 March 2015 / Published online: 31 March 2015 Ó Springer International Publishing Switzerland 2015 Abstract ‘‘Everything is everywhere, but environ- relevant for biogeography of freshwater phytoplank- ments selects.’’ Is this true? The cosmopolitan nature ton. The following topics are considered: dispersal of algae, including phytoplankton, has been highlight- agents and distances; survival strategies of species; ed in many textbooks and burnt into the minds of geographic distribution of different types; patterns of biologists during their studies. However, the accumu- invasions; tools of molecular genetics; and metabo- lating knowledge on the occurrence of individual lomics to explore dispersal patterns, island biogeog- phytoplankton species in habitats where they have not raphy, and associated species–area relationships for been seen before, reports on invasive phytoplankton algae. species, and the increasing number of papers with phylogenetic trees and tracing secondary metabolites, Keywords Distribution Á Dispersal Á Invasion Á especially cyanotoxins, contradict. Phytoplankton Island biogeography Á Genomics Á Bloom-forming species, with rare exceptions, are neither cosmopoli- cyanobacteria tan, nor ubiquists. In this review paper, -
Cooperative Interactions in Niche Communities
fmicb-08-02099 October 23, 2017 Time: 15:56 # 1 ORIGINAL RESEARCH published: 25 October 2017 doi: 10.3389/fmicb.2017.02099 Cyanobacteria and Alphaproteobacteria May Facilitate Cooperative Interactions in Niche Communities Marc W. Van Goethem, Thulani P. Makhalanyane*, Don A. Cowan and Angel Valverde*† Centre for Microbial Ecology and Genomics, Department of Genetics, University of Pretoria, Pretoria, South Africa Hypoliths, microbial assemblages found below translucent rocks, provide important ecosystem services in deserts. While several studies have assessed microbial diversity Edited by: Jesse G. Dillon, of hot desert hypoliths and whether these communities are metabolically active, the California State University, interactions among taxa remain unclear. Here, we assessed the structure, diversity, and Long Beach, United States co-occurrence patterns of hypolithic communities from the hyperarid Namib Desert Reviewed by: by comparing total (DNA) and potentially active (RNA) communities. The potentially Jamie S. Foster, University of Florida, United States active and total hypolithic communities differed in their composition and diversity, with Daniela Billi, significantly higher levels of Cyanobacteria and Alphaproteobacteria in potentially active Università degli Studi di Roma Tor Vergata, Italy hypoliths. Several phyla known to be abundant in total hypolithic communities were *Correspondence: metabolically inactive, indicating that some hypolithic taxa may be dormant or dead. Thulani P. Makhalanyane The potentially active hypolith network -
Microcoleus Pseudautumnalis Sp. Nov. (Cyanobacteria, Oscillatoriales) Producing 2-Methylisoborneol
Bull. Natl. Mus. Nat. Sci., Ser. B, 45(3), pp. 93–101, August 22, 2019 Microcoleus pseudautumnalis sp. nov. (Cyanobacteria, Oscillatoriales) producing 2-methylisoborneol Yuko Niiyama* and Akihiro Tuji Department of Botany, National Museum of Nature and Science, 4–1–1 Amakubo, Tsukuba, Ibaraki 305–0005, Japan * E-mail: [email protected] (Received 13 May 2019; accepted 26 June 2019) Abstract A new species, Microcoleus pseudautumnalis, producing both 2-methylisoborneol (2-MIB) and geosmin is described. We have conducted a systematic study of a bad-smelling, 2-MIB producing planktic Pseudanabaena species in Japan and described four new species (P. foetida, P. subfoetida, P. cinerea, and P. yagii). In the course of this study, we found another kind of filamentous cyanobacteria with a bad smell in a plankton sample collected from a pond in Japan. The morphology of M. pseudautumnalis resembles that of M. autumnalis (Trevisan ex Gomont) Strunecký, Komárek et Johansen (basionym: Phormidium autumnale Trevisan ex Gomont). The sheath is thin and always contains only one trichome. Trichomes are immotile, gray- ish-green, not constricted at the cross-walls, not attenuated or attenuated towards the ends with truncated or capitated apical cells, and sometimes with calyptrae that are relatively wider (6.9– 7.6 μm) than those of M. autumnalis. The phylogeny of the 16S rRNA gene of M. pseudautumnalis revealed that it is in the clade of the genus Microcoleus and contains an 11-bp insert. Microcoleus autumnalis s. str. is said to lack this insert. Microcoleus pseudautumnalis has four kinds of 2-MIB genes, and the phylogeny of this taxon is different from those of Pseudanabaena sp. -
Cyanobacteria Evolution Insight from the Fossil Record
Free Radical Biology and Medicine 140 (2019) 206–223 Contents lists available at ScienceDirect Free Radical Biology and Medicine journal homepage: www.elsevier.com/locate/freeradbiomed Cyanobacteria evolution: Insight from the fossil record T ∗ Catherine F. Demoulina, ,1, Yannick J. Laraa,1, Luc Corneta,b, Camille Françoisa, Denis Baurainb, Annick Wilmottec, Emmanuelle J. Javauxa a Early Life Traces & Evolution - Astrobiology, UR ASTROBIOLOGY, Geology Department, University of Liège, Liège, Belgium b Eukaryotic Phylogenomics, InBioS-PhytoSYSTEMS, University of Liège, Liège, Belgium c BCCM/ULC Cyanobacteria Collection, InBioS-CIP, Centre for Protein Engineering, University of Liège, Liège, Belgium ARTICLE INFO ABSTRACT Keywords: Cyanobacteria played an important role in the evolution of Early Earth and the biosphere. They are responsible Biosignatures for the oxygenation of the atmosphere and oceans since the Great Oxidation Event around 2.4 Ga, debatably Cyanobacteria earlier. They are also major primary producers in past and present oceans, and the ancestors of the chloroplast. Evolution Nevertheless, the identification of cyanobacteria in the early fossil record remains ambiguous because the Microfossils morphological criteria commonly used are not always reliable for microfossil interpretation. Recently, new Molecular clocks biosignatures specific to cyanobacteria were proposed. Here, we review the classic and new cyanobacterial Precambrian biosignatures. We also assess the reliability of the previously described cyanobacteria fossil record and the challenges of molecular approaches on modern cyanobacteria. Finally, we suggest possible new calibration points for molecular clocks, and strategies to improve our understanding of the timing and pattern of the evolution of cyanobacteria and oxygenic photosynthesis. 1. Introduction eukaryote [8,9], and subsequent higher-order endosymbiotic events [10]. -
DOMAIN Bacteria PHYLUM Cyanobacteria
DOMAIN Bacteria PHYLUM Cyanobacteria D Bacteria Cyanobacteria P C Chroobacteria Hormogoneae Cyanobacteria O Chroococcales Oscillatoriales Nostocales Stigonematales Sub I Sub III Sub IV F Homoeotrichaceae Chamaesiphonaceae Ammatoideaceae Microchaetaceae Borzinemataceae Family I Family I Family I Chroococcaceae Borziaceae Nostocaceae Capsosiraceae Dermocarpellaceae Gomontiellaceae Rivulariaceae Chlorogloeopsaceae Entophysalidaceae Oscillatoriaceae Scytonemataceae Fischerellaceae Gloeobacteraceae Phormidiaceae Loriellaceae Hydrococcaceae Pseudanabaenaceae Mastigocladaceae Hyellaceae Schizotrichaceae Nostochopsaceae Merismopediaceae Stigonemataceae Microsystaceae Synechococcaceae Xenococcaceae S-F Homoeotrichoideae Note: Families shown in green color above have breakout charts G Cyanocomperia Dactylococcopsis Prochlorothrix Cyanospira Prochlorococcus Prochloron S Amphithrix Cyanocomperia africana Desmonema Ercegovicia Halomicronema Halospirulina Leptobasis Lichen Palaeopleurocapsa Phormidiochaete Physactis Key to Vertical Axis Planktotricoides D=Domain; P=Phylum; C=Class; O=Order; F=Family Polychlamydum S-F=Sub-Family; G=Genus; S=Species; S-S=Sub-Species Pulvinaria Schmidlea Sphaerocavum Taxa are from the Taxonomicon, using Systema Natura 2000 . Triochocoleus http://www.taxonomy.nl/Taxonomicon/TaxonTree.aspx?id=71022 S-S Desmonema wrangelii Palaeopleurocapsa wopfnerii Pulvinaria suecica Key Genera D Bacteria Cyanobacteria P C Chroobacteria Hormogoneae Cyanobacteria O Chroococcales Oscillatoriales Nostocales Stigonematales Sub I Sub III Sub -
Seeking the True Oscillatoria: a Quest for a Reliable Phylogenetic and Taxonomic Reference Point
Preslia 90: 151–169, 2018 151 Seeking the true Oscillatoria: a quest for a reliable phylogenetic and taxonomic reference point Hledání fylogenetického a taxonomického referenčního bodu pro rod Oscillatoria RadkaMühlsteinová1,2,TomášHauer1,2,PaulDe Ley3 &NicolePietrasiak4 1Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, České Budějovice, Czech Republic, CZ-370 05, e-mail: [email protected]; 2The Czech Academy of Sciences, Institute of Botany, Centre for Phycology, Dukelská 135, CZ-379 82, Třeboň, Czech Republic, e-mail: [email protected]; 3Department of Nematology, University of California Riverside, Riverside, California 92521, USA, e-mail: [email protected]; 4Department of Plant and Environmental Science, New Mexico State University, Skeen Hall, Box 30003 MSC 3Q, Las Cruces, New Mexico 88003, USA, e-mail: [email protected] Mühlsteinová R., Hauer T., De Ley P. & Pietrasiak N. (2018): Seeking the true Oscillatoria: a quest for a reliable phylogenetic and taxonomic reference point. – Preslia 90: 151–169. Reliable taxonomy of any group of organisms cannot be performed without phylogenetic refer- ence points. In the historical “morphological era”, a designated type specimen was considered fully sufficient but nowadays this principle can prove to be problematic and challenging espe- cially when studying microscopic organisms. However, within the last decades there has been tre- mendous advancement in microscopy imaging and molecular biology offering additional data to systematic studies in ways that are revolutionizing cyanobacterial taxonomy. Unfortunately, most of the existing herbarium specimens or even iconotypes of old established taxa often cannot be subjects of modern analytic methods. Such is the case for the widely known cyanobacterial genus Oscillatoria which was introduced by Vaucher in 1803. -
Microcystin Incidence in the Drinking Water of Mozambique: Challenges for Public Health Protection
toxins Review Microcystin Incidence in the Drinking Water of Mozambique: Challenges for Public Health Protection Isidro José Tamele 1,2,3 and Vitor Vasconcelos 1,4,* 1 CIIMAR/CIMAR—Interdisciplinary Center of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto, Avenida General Norton de Matos, 4450-238 Matosinhos, Portugal; [email protected] 2 Institute of Biomedical Science Abel Salazar, University of Porto, R. Jorge de Viterbo Ferreira 228, 4050-313 Porto, Portugal 3 Department of Chemistry, Faculty of Sciences, Eduardo Mondlane University, Av. Julius Nyerere, n 3453, Campus Principal, Maputo 257, Mozambique 4 Faculty of Science, University of Porto, Rua do Campo Alegre, 4069-007 Porto, Portugal * Correspondence: [email protected]; Tel.: +351-223-401-817; Fax: +351-223-390-608 Received: 6 May 2020; Accepted: 31 May 2020; Published: 2 June 2020 Abstract: Microcystins (MCs) are cyanotoxins produced mainly by freshwater cyanobacteria, which constitute a threat to public health due to their negative effects on humans, such as gastroenteritis and related diseases, including death. In Mozambique, where only 50% of the people have access to safe drinking water, this hepatotoxin is not monitored, and consequently, the population may be exposed to MCs. The few studies done in Maputo and Gaza provinces indicated the occurrence of MC-LR, -YR, and -RR at a concentration ranging from 6.83 to 7.78 µg L 1, which are very high, around 7 times · − above than the maximum limit (1 µg L 1) recommended by WHO. The potential MCs-producing in · − the studied sites are mainly Microcystis species.