Speciation Genomics 2020 W
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Microevolution and the Genetics of Populations Microevolution Refers to Varieties Within a Given Type
Chapter 8: Evolution Lesson 8.3: Microevolution and the Genetics of Populations Microevolution refers to varieties within a given type. Change happens within a group, but the descendant is clearly of the same type as the ancestor. This might better be called variation, or adaptation, but the changes are "horizontal" in effect, not "vertical." Such changes might be accomplished by "natural selection," in which a trait within the present variety is selected as the best for a given set of conditions, or accomplished by "artificial selection," such as when dog breeders produce a new breed of dog. Lesson Objectives ● Distinguish what is microevolution and how it affects changes in populations. ● Define gene pool, and explain how to calculate allele frequencies. ● State the Hardy-Weinberg theorem ● Identify the five forces of evolution. Vocabulary ● adaptive radiation ● gene pool ● migration ● allele frequency ● genetic drift ● mutation ● artificial selection ● Hardy-Weinberg theorem ● natural selection ● directional selection ● macroevolution ● population genetics ● disruptive selection ● microevolution ● stabilizing selection ● gene flow Introduction Darwin knew that heritable variations are needed for evolution to occur. However, he knew nothing about Mendel’s laws of genetics. Mendel’s laws were rediscovered in the early 1900s. Only then could scientists fully understand the process of evolution. Microevolution is how individual traits within a population change over time. In order for a population to change, some things must be assumed to be true. In other words, there must be some sort of process happening that causes microevolution. The five ways alleles within a population change over time are natural selection, migration (gene flow), mating, mutations, or genetic drift. -
Reproductive Isolation of Two Sympatric Louseworts, Pedicularis
Blackwell Publishing LtdOxford, UKBIJBiological Journal of the Linnean Society0024-4066© 2006 The Linnean Society of London? 2006 90? 3748 Original Article REPRODUCTIVE ISOLATION IN SYMPATRIC LOUSEWORTS C.-F. YANG ET AL . Biological Journal of the Linnean Society, 2007, 90, 37–48. With 4 figures Reproductive isolation of two sympatric louseworts, Pedicularis rhinanthoides and Pedicularis longiflora (Orobanchaceae): how does the same pollinator type avoid interspecific pollen transfer? CHUN-FENG YANG, ROBERT W. GITURU† and YOU-HAO GUO* College of Life Sciences, Wuhan University, Wuhan 430072, People’s Republic of China Received 11 April 2005; accepted for publication 1 March 2006 To study the isolation mechanism of two commonly intermingled louseworts, Pedicularis rhinanthoides and Pedic- ularis longiflora, pollination biology in three mixed populations with the two species was investigated during a 3- year project. The results indicated that higher flowering density could help to enhance pollinator activity, and thus increase reproductive output. Bumblebees are the exclusive pollinator for the two louseworts and are essential for their reproductive success. Reproductive isolation between the two species is achieved by a combination of pre- and postzygotic isolation mechanisms. Although both species are pollinated by bumblebees, the present study indicates they successfully avoid interspecific pollen transfer due to floral isolation. Mechanical isolation is achieved by the stigma in the two species picking up pollen from different parts of the pollinator’s body, whereas ethological isolation occurs due to flower constancy. Additionally, strong postzygotic isolation was demonstrated by non seed set after arti- ficial cross-pollination even with successful pollen tube growth. We describe the hitherto unreported role of variation in the tightness and direction of the twist of the corolla beak in maintaining mechanical isolation between Pedicu- laris species. -
Maria Triantafyllidou
The limits of species recognition: heterospecific song learning in pied flycatchers Maria Triantafyllidou Degree project in biology, Bachelor of science, 2016 Examensarbete i biologi 15 hp till kandidatexamen, 2016 Biology Education Centre and Department of Ecology and Genetics/Animal Ecology, Uppsala University Supervisors: Dr. Anna Qvarnström and Dr. David Wheatcroft ABSTRACT The closely related species pied flycatcher (Ficedula hypoleuca) and collared flycatcher (F. albicollis) co-occur on the Swedish island of Öland, where they compete over similar resources. The majority of male pied flycatchers have been found to incorporate elements of the collared flycatcher song in their repertoire. Given that birdsong is partly inherited and partly learned, the relative contribution of genetic predispositions versus acoustic stimuli varies across different species. The results show that in pied flycatchers, song acquisition is tightly correlated with imprinting, and can therefore be greatly influenced by heterospecific tutors in their surroundings, i.e. male collared flycatchers. I found that pied males are capable of not only memorizing collared song elements, but also producing them with high fidelity. Thus, I infer that pied flycatchers are characterized by a high degree of vocal plasticity. INTRODUCTION The importance of sexual signals in speciation It is largely recognized that sexual signals play a key role in mate recognition as they indicate species identity and mate quality. It has been increasingly appreciated that they also play a significant role in patterns of speciation (Slabbekoorn and Smith 2002, Ritchie 2007, Verzijden et al. 2012). That is linked with the fact that sex traits evolve quickly and are therefore likely to diverge among closely related species, eventually leading to reproductive isolation (Qvarnström et al. -
Genetic Structure and Eco-Geographical Differentiation of Lancea Tibetica in the Qinghai-Tibetan Plateau
G C A T T A C G G C A T genes Article Genetic Structure and Eco-Geographical Differentiation of Lancea tibetica in the Qinghai-Tibetan Plateau Xiaofeng Chi 1,2 , Faqi Zhang 1,2,* , Qingbo Gao 1,2, Rui Xing 1,2 and Shilong Chen 1,2,* 1 Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810001, China; [email protected] (X.C.); [email protected] (Q.G.); [email protected] (R.X.) 2 Qinghai Provincial Key Laboratory of Crop Molecular Breeding, Xining 810001, China * Correspondence: [email protected] (F.Z.); [email protected] (S.C.) Received: 14 December 2018; Accepted: 24 January 2019; Published: 29 January 2019 Abstract: The uplift of the Qinghai-Tibetan Plateau (QTP) had a profound impact on the plant speciation rate and genetic diversity. High genetic diversity ensures that species can survive and adapt in the face of geographical and environmental changes. The Tanggula Mountains, located in the central of the QTP, have unique geographical significance. The aim of this study was to investigate the effect of the Tanggula Mountains as a geographical barrier on plant genetic diversity and structure by using Lancea tibetica. A total of 456 individuals from 31 populations were analyzed using eight pairs of microsatellite makers. The total number of alleles was 55 and the number per locus ranged from 3 to 11 with an average of 6.875. The polymorphism information content (PIC) values ranged from 0.2693 to 0.7761 with an average of 0.4378 indicating that the eight microsatellite makers were efficient for distinguishing genotypes. -
Behavioural Mechanisms of Reproductive Isolation Between Two Hybridizing Dung Fly Species
Animal Behaviour 132 (2017) 155e166 Contents lists available at ScienceDirect Animal Behaviour journal homepage: www.elsevier.com/locate/anbehav Behavioural mechanisms of reproductive isolation between two hybridizing dung fly species * Athene Giesen , Wolf U. Blanckenhorn, Martin A. Schafer€ Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland article info Characterization of the phenotypic differentiation and genetic basis of traits that can contribute to Article history: reproductive isolation is an important avenue to understand the mechanisms of speciation. We quan- Received 29 November 2016 tified the degree of prezygotic isolation and geographical variation in mating behaviour among four Initial acceptance 26 January 2017 populations of Sepsis neocynipsea that occur in allopatry, parapatry or sympatry with four populations of Final acceptance 21 June 2017 its sister species Sepsis cynipsea. To obtain insights into the quantitative genetic basis and the role of selection against hybrid phenotypes we also investigated mating behaviour of F1 hybrid offspring and MS. number: 16-01039R corresponding backcrosses with the parental populations. Our study documents successful hybridization under laboratory conditions, with low copulation frequencies in heterospecific pairings but higher fre- Keywords: quencies in pairings of F1 hybrids signifying hybrid vigour. Analyses of F1 offspring and their parental biogeography backcrosses provided little evidence for sexual selection against hybrids. -
Evolution and Stability of Ring Species
Evolution and Stability of Ring Species 1 Ayana de Brito Martins Marcus A. M. de Aguiar 2,3 Yaneer Bar-Yam 3 1 Instituto de Biociências, Universidade de São Paulo 2 Instituto de Física, Universidade Estadual de Campinas 3 New England Complex Systems Institute Ring Species REPRODUCTIVE ISOLATION Ring species in nature Phylloscopus Irwin et al. 2005 Geographical barriers Geographical barriers POPULATION Geographical barriers Geographical barriers The model GENES AGENT 0 0 0 0 0 0 0 0 0 0 ... 0 0 0 0 0 0 0 0 0 0 POSITION IN SPACE X(AGENT), Y(AGENT) The model L CARRYING CAPACITY MUTATION RATE The model: Time evolution Tn Tn+1 DISCRETE GENERATIONS The model: Time evolution Tn Tn+1 DISCRETE GENERATION The model: Time evolution Tn Tn+1 DISCRETE GENERATIONS The model: Time evolution Tn Tn+1 DISCRETE GENERATIONS The model: Time evolution Tn Tn+1 Tn+2 DISCRETE GENERATIONS The model: population growth Tn Tn+1 The model: population growth Tn Tn+1 The model: population growth Tn Tn+1 The model: Reproduction BREEDING NEIGHBORHOOD S The model: Reproduction BREEDING NEIGHBORHOOD S The model: Reproduction THERE IS A CRITICAL GENETIC DISTANCE ABOVE WHICH INDIVIDUALS DO NOT REPRODUCE INDIVIDUAL 0 0 1 1 0 0 0 0 0 0 ... 0 0 0 1 0 0 0 1 0 0 NEIGHBOR 1 ≠ ≠ ≠ ≠ ≠ ≠ 1 0 1 1 0 0 1 0 0 1 ... 0 0 1 1 0 0 0 0 1 0 ADDITIVE EFFECT The model: Reproduction The model: Reproduction ! The model: Reproduction RECOMBINATION 1 0 0 0 1 0 0 0 0 0 .. -
10 What Is a Species? Investigation • 3–4 C L a S S S E S S I O N S
10 What Is a Species? investigation • 3–4 c l a s s s e s s i o n s OVERVIEW MatERIals and adVanCE PREPaRatIOn In this activity students learn about the biological species For the teacher concept in defining species and how it provides information transparency of Scoring Guide: GROUP INTERACTION (GI) about where new species are in the process of separation transparency of Scoring Guide: UNDERSTANDING from closely related species. Students then investigate the CONCEPTS (UC) factors that lead to reproductive isolation of species. For each group of four students set of 14 Species Pairs Cards KEy COntEnt set of 8 Reproductive Barrier Cards 1. Species evolve over time. The millions of species that live chart paper* (optional) on the earth today are related by descent from common markers* (optional) ancestors. For each student 2. Taxa are classified in a hierarchy of groups and sub- Student Sheet 10.1, “Supporting a Scientific Argument” groups based on genealogical relationships. (optional) 3. The broad patterns of behavior exhibited by animals Scoring Guide: GROUP INTERACTION (GI) (optional) have evolved by natural selection as a result of reproduc- Scoring Guide: UNDERSTANDING CONCEPTS (UC) tive success. (optional) 4. Scientists have found that the original definition of spe- *Not supplied in kit cies as groups of organisms with similar morphology Decide in advance if you will hand out Student Sheet does not reflect underlying evolutionary processes. 10.1,“Supporting a Scientific Argument,” or have students 5. The biological species concept defines a species as a pop- record this information in their science notebooks. -
Coupling, Reinforcement, and Speciation Roger Butlin, Carole Smadja
Coupling, Reinforcement, and Speciation Roger Butlin, Carole Smadja To cite this version: Roger Butlin, Carole Smadja. Coupling, Reinforcement, and Speciation. American Naturalist, Uni- versity of Chicago Press, 2018, 191 (2), pp.155-172. 10.1086/695136. hal-01945350 HAL Id: hal-01945350 https://hal.archives-ouvertes.fr/hal-01945350 Submitted on 5 Dec 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License vol. 191, no. 2 the american naturalist february 2018 Synthesis Coupling, Reinforcement, and Speciation Roger K. Butlin1,2,* and Carole M. Smadja1,3 1. Stellenbosch Institute for Advanced Study, Wallenberg Research Centre at Stellenbosch University, Stellenbosch 7600, South Africa; 2. Department of Animal and Plant Sciences, The University of Sheffield, Sheffield S10 2TN, United Kingdom; and Department of Marine Sciences, University of Gothenburg, Tjärnö SE-45296 Strömstad, Sweden; 3. Institut des Sciences de l’Evolution, Unité Mixte de Recherche 5554 (Centre National de la Recherche Scientifique–Institut de Recherche pour le Développement–École pratique des hautes études), Université de Montpellier, 34095 Montpellier, France Submitted March 15, 2017; Accepted August 28, 2017; Electronically published December 15, 2017 abstract: During the process of speciation, populations may di- Introduction verge for traits and at their underlying loci that contribute barriers Understanding how reproductive isolation evolves is key fl to gene ow. -
Species Change Over Time
KEY CONCEPT Species change over time. BEFORE, you learned NOW, you will learn • Fossils are evidence of earlier • About early ideas and observa- life tions on evolution • More complex organisms have • How Darwin developed his developed over time theory of natural selection • Mass extinctions contributed to • How new species arise from the development of Earth’s older species history VOCABULARY THINK ABOUT evolution p. 797 How have telephones changed over time? natural selection p. 801 adaptation p. 802 Today people across the world can speciation p. 804 communicate in many different ways. One of the most common ways is over the telephone. Looking at the two pictures, can you describe how this form of communication has changed over time? Scientists explore the concept of evolution. MAIN IDEA AND DETAILS In a general sense, evolution involves a change over time. You could Make a chart for the main say that the way humans communicate has evolved. Certainly idea scientists explore the concept of evolution. telephones have changed over time. The first telephones were the size Include details about scien- of a shoebox. Today a telephone can fit in the palm of your hand and tists’ observations. can send images as well as sound. In biology,evolution refers to the process though which species change over time. The change results from a change in the genetic material of an organism and is passed from one generation to the next. Check Your Reading What is evolution? Chapter 23: History of Life 797 Early Ideas reading tip In the early 1800s, a French scientist named Jean Baptiste de Lamarck The word acquire comes was the first scientist to propose a model of how life evolves. -
Ecological Speciation in Phytophagous Insects
DOI: 10.1111/j.1570-7458.2009.00916.x MINI REVIEW Ecological speciation in phytophagous insects Kei W. Matsubayashi1, Issei Ohshima2 &PatrikNosil3,4* 1Department of Natural History Sciences, Hokkaido University, Sapporo 060-0810, Japan, 2Department of Evolutionary Biology, National Institute for Basic Biology, Okazaki 444-8585, Japan, 3Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA, and 4Wissenschaftskolleg, Institute for Advanced Study, Berlin, 14193, Germany Accepted: 7 August 2009 Key words: host adaptation, genetics of speciation, natural selection, reproductive isolation, herbivo- rous insects Abstract Divergent natural selection has been shown to promote speciation in a wide range of taxa. For exam- ple, adaptation to different ecological environments, via divergent selection, can result in the evolution of reproductive incompatibility between populations. Phytophagous insects have been at the forefront of these investigations of ‘ecological speciation’ and it is clear that adaptation to differ- ent host plants can promote insect speciation. However, much remains unknown. For example, there is abundant variability in the extent to which divergent selection promotes speciation, the sources of divergent selection, the types of reproductive barriers involved, and the genetic basis of divergent adaptation. We review these factors here. Several findings emerge, including the observation that although numerous different sources of divergent selection and reproductive isolation can be involved in insect speciation, their order of evolution and relative importance are poorly understood. Another finding is that the genetic basis of host preference and performance can involve loci of major effect and opposing dominance, factors which might facilitate speciation in the face of gene flow. In addition, we raise a number of other recent issues relating to phytophagous insect speciation, such as alternatives to ecological speciation, the geography of speciation, and the molecular signatures of spe- ciation. -
THE IMPACT of POLYPLOIDY on GENETIC STRUCTURE and REPRODUCTIVE ISOLATION in the GENUS LEUCANTHEMUM Mill. (COMPOSITAE, ANTHEMIDEAE)
THE IMPACT OF POLYPLOIDY ON GENETIC STRUCTURE AND REPRODUCTIVE ISOLATION IN THE GENUS LEUCANTHEMUM Mill. (COMPOSITAE, ANTHEMIDEAE) Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) der Fakultät für Biologie und vorklinische Medizin der Universität Regensburg vorgelegt von Roland Greiner aus Regensburg im Dezember 2011 Das Promotionsgesuch wurde eingereicht am: Die Arbeit wurde angeleitet von: Prof. Dr. Christoph Oberprieler Unterschrift: Evolution is a change from an indefinite, incoherent, homogeneity to a definite, coherent, heterogeneity, through continuous differentiations and integrations. Herbert Spencer Evolution is a change from a no-howish, untalkaboutable, all-alikeness by continous sticktogetheration and somethingelsification. William James Table of Contents Table of Contents..........................................................................................................I List of Tables...............................................................................................................III Table of Figures...........................................................................................................V Abstract.......................................................................................................................1 General Introduction...................................................................................................2 Types of Polyploidy..................................................................................................3 -
Ecological Speciation with Gene Flow in Neodiprion Pinetum and N. Lecontei
University of Kentucky UKnowledge Theses and Dissertations--Biology Biology 2020 FROM GENES TO SPECIES: ECOLOGICAL SPECIATION WITH GENE FLOW IN NEODIPRION PINETUM AND N. LECONTEI Emily E. Bendall University of Kentucky, [email protected] Author ORCID Identifier: https://orcid.org/0000-0003-2524-088X Digital Object Identifier: https://doi.org/10.13023/etd.2020.221 Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Bendall, Emily E., "FROM GENES TO SPECIES: ECOLOGICAL SPECIATION WITH GENE FLOW IN NEODIPRION PINETUM AND N. LECONTEI" (2020). Theses and Dissertations--Biology. 62. https://uknowledge.uky.edu/biology_etds/62 This Doctoral Dissertation is brought to you for free and open access by the Biology at UKnowledge. It has been accepted for inclusion in Theses and Dissertations--Biology by an authorized administrator of UKnowledge. For more information, please contact [email protected]. STUDENT AGREEMENT: I represent that my thesis or dissertation and abstract are my original work. Proper attribution has been given to all outside sources. I understand that I am solely responsible for obtaining any needed copyright permissions. I have obtained needed written permission statement(s) from the owner(s) of each third-party copyrighted matter to be included in my work, allowing electronic distribution (if such use is not permitted by the fair use doctrine) which will be submitted to UKnowledge as Additional File. I hereby grant to The University of Kentucky and its agents the irrevocable, non-exclusive, and royalty-free license to archive and make accessible my work in whole or in part in all forms of media, now or hereafter known.