ERK8 Is a Negative Regulator of O-Galnac Glycosylation and Cell Migration
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Systematic Screening for Potential Therapeutic Targets in Osteosarcoma Through a Kinome-Wide CRISPR-Cas9 Library
Cancer Biol Med 2020. doi: 10.20892/j.issn.2095-3941.2020.0162 ORIGINAL ARTICLE Systematic screening for potential therapeutic targets in osteosarcoma through a kinome-wide CRISPR-Cas9 library Yuanzhong Wu*, Liwen Zhou*, Zifeng Wang, Xin Wang, Ruhua Zhang, Lisi Zheng, Tiebang Kang Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangzhou 510060, China ABSTRACT Objective: Osteosarcoma is the most common primary malignant bone tumor. However, the survival of patients with osteosarcoma has remained unchanged during the past 30 years, owing to a lack of efficient therapeutic targets. Methods: We constructed a kinome-targeting CRISPR-Cas9 library containing 507 kinases and 100 nontargeting controls and screened the potential kinase targets in osteosarcoma. The CRISPR screening sequencing data were analyzed with the Model-based Analysis of Genome-wide CRISPR/Cas9 Knockout (MAGeCK) Python package. The functional data were applied in the 143B cell line through lenti-CRISPR-mediated gene knockout. The clinical significance of kinases in the survival of patients with osteosarcoma was analyzed in the R2: Genomics Analysis and Visualization Platform. Results: We identified 53 potential kinase targets in osteosarcoma. Among these targets, we analyzed 3 kinases, TRRAP, PKMYT1, and TP53RK, to validate their oncogenic functions in osteosarcoma. PKMYT1 and TP53RK showed higher expression in osteosarcoma than in normal bone tissue, whereas TRRAP showed no significant difference. High expression of all 3 kinases was associated with relatively poor prognosis in patients with osteosarcoma. Conclusions: Our results not only offer potential therapeutic kinase targets in osteosarcoma but also provide a paradigm for functional genetic screening by using a CRISPR-Cas9 library, including target design, library construction, screening workflow, data analysis, and functional validation. -
The Role of the Mtor Pathway in Developmental Reprogramming Of
THE ROLE OF THE MTOR PATHWAY IN DEVELOPMENTAL REPROGRAMMING OF HEPATIC LIPID METABOLISM AND THE HEPATIC TRANSCRIPTOME AFTER EXPOSURE TO 2,2',4,4'- TETRABROMODIPHENYL ETHER (BDE-47) An Honors Thesis Presented By JOSEPH PAUL MCGAUNN Approved as to style and content by: ________________________________________________________** Alexander Suvorov 05/18/20 10:40 ** Chair ________________________________________________________** Laura V Danai 05/18/20 10:51 ** Committee Member ________________________________________________________** Scott C Garman 05/18/20 10:57 ** Honors Program Director ABSTRACT An emerging hypothesis links the epidemic of metabolic diseases, such as non-alcoholic fatty liver disease (NAFLD) and diabetes with chemical exposures during development. Evidence from our lab and others suggests that developmental exposure to environmentally prevalent flame-retardant BDE47 may permanently reprogram hepatic lipid metabolism, resulting in an NAFLD-like phenotype. Additionally, we have demonstrated that BDE-47 alters the activity of both mTOR complexes (mTORC1 and 2) in hepatocytes. The mTOR pathway integrates environmental information from different signaling pathways, and regulates key cellular functions such as lipid metabolism, innate immunity, and ribosome biogenesis. Thus, we hypothesized that the developmental effects of BDE-47 on liver lipid metabolism are mTOR-dependent. To assess this, we generated mice with liver-specific deletions of mTORC1 or mTORC2 and exposed these mice and their respective controls perinatally to -
TACC1–Chtog–Aurora a Protein Complex in Breast Cancer
Oncogene (2003) 22, 8102–8116 & 2003 Nature Publishing Group All rights reserved 0950-9232/03 $25.00 www.nature.com/onc TACC1–chTOG–Aurora A protein complex in breast cancer Nathalie Conte1,Be´ ne´ dicte Delaval1, Christophe Ginestier1, Alexia Ferrand1, Daniel Isnardon2, Christian Larroque3, Claude Prigent4, Bertrand Se´ raphin5, Jocelyne Jacquemier1 and Daniel Birnbaum*,1 1Department of Molecular Oncology, U119 Inserm, Institut Paoli-Calmettes, IFR57, Marseille, France; 2Imaging Core Facility, Institut Paoli-Calmettes, Marseille, France; 3E229 Inserm, CRLC Val d’Aurelle/Paul Lamarque, Montpellier, France; 4Laboratoire du cycle cellulaire, UMR 6061 CNRS, IFR 97, Faculte´ de Me´decine, Rennes, France; 5Centre de Ge´ne´tique Mole´culaire, Gif-sur-Yvette, France The three human TACC (transforming acidic coiled-coil) metabolism, including mitosis and intracellular trans- genes encode a family of proteins with poorly defined port of molecules, is progressing but many components functions that are suspected to play a role in oncogenesis. remain to be discovered and characterized. We describe A Xenopus TACC homolog called Maskin is involved in here the interaction of the TACC1 protein with several translational control, while Drosophila D-TACC interacts protein partners that makes it a good candidate to with the microtubule-associated protein MSPS (Mini participate in microtubule-associated processes in nor- SPindleS) to ensure proper dynamics of spindle pole mal and tumoral cells. microtubules during cell division. We have delineated here In -
Transposon Insertion Mutagenesis in Mice for Modeling Human Cancers: Critical Insights Gained and New Opportunities
International Journal of Molecular Sciences Review Transposon Insertion Mutagenesis in Mice for Modeling Human Cancers: Critical Insights Gained and New Opportunities Pauline J. Beckmann 1 and David A. Largaespada 1,2,3,4,* 1 Department of Pediatrics, University of Minnesota, Minneapolis, MN 55455, USA; [email protected] 2 Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA 3 Department of Genetics, Cell Biology and Development, University of Minnesota, Minneapolis, MN 55455, USA 4 Center for Genome Engineering, University of Minnesota, Minneapolis, MN 55455, USA * Correspondence: [email protected]; Tel.: +1-612-626-4979; Fax: +1-612-624-3869 Received: 3 January 2020; Accepted: 3 February 2020; Published: 10 February 2020 Abstract: Transposon mutagenesis has been used to model many types of human cancer in mice, leading to the discovery of novel cancer genes and insights into the mechanism of tumorigenesis. For this review, we identified over twenty types of human cancer that have been modeled in the mouse using Sleeping Beauty and piggyBac transposon insertion mutagenesis. We examine several specific biological insights that have been gained and describe opportunities for continued research. Specifically, we review studies with a focus on understanding metastasis, therapy resistance, and tumor cell of origin. Additionally, we propose further uses of transposon-based models to identify rarely mutated driver genes across many cancers, understand additional mechanisms of drug resistance and metastasis, and define personalized therapies for cancer patients with obesity as a comorbidity. Keywords: animal modeling; cancer; transposon screen 1. Transposon Basics Until the mid of 1900’s, DNA was widely considered to be a highly stable, orderly macromolecule neatly organized into chromosomes. -
Genetic Variant in 3' Untranslated Region of the Mouse Pycard Gene
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.26.437184; this version posted March 26, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 2 3 Title: 4 Genetic Variant in 3’ Untranslated Region of the Mouse Pycard Gene Regulates Inflammasome 5 Activity 6 Running Title: 7 3’UTR SNP in Pycard regulates inflammasome activity 8 Authors: 9 Brian Ritchey1*, Qimin Hai1*, Juying Han1, John Barnard2, Jonathan D. Smith1,3 10 1Department of Cardiovascular & Metabolic Sciences, Lerner Research Institute, Cleveland Clinic, 11 Cleveland, OH 44195 12 2Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 13 44195 14 3Department of Molecular Medicine, Cleveland Clinic Lerner College of Medicine of Case Western 15 Reserve University, Cleveland, OH 44195 16 *, These authors contributed equally to this study. 17 Address correspondence to Jonathan D. Smith: email [email protected]; ORCID ID 0000-0002-0415-386X; 18 mailing address: Cleveland Clinic, Box NC-10, 9500 Euclid Avenue, Cleveland, OH 44195, USA. 19 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.26.437184; this version posted March 26, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 20 Abstract 21 Quantitative trait locus mapping for interleukin-1 release after inflammasome priming and activation 22 was performed on bone marrow-derived macrophages (BMDM) from an AKRxDBA/2 strain intercross. -
Gene Section Review
Atlas of Genetics and Cytogenetics in Oncology and Haematology OPEN ACCESS JOURNAL AT INIST-CNRS Gene Section Review TACC1 (transforming, acidic coiled-coil containing protein 1) Ivan Still, Melissa R Eslinger, Brenda Lauffart Department of Biological Sciences, Arkansas Tech University, 1701 N Boulder Ave Russellville, AR 72801, USA (IS), Department of Chemistry and Life Science Bartlett Hall, United States Military Academy, West Point, New York 10996, USA (MRE), Department of Physical Sciences Arkansas Tech University, 1701 N Boulder Ave Russellville, AR 72801, USA (BL) Published in Atlas Database: December 2008 Online updated version : http://AtlasGeneticsOncology.org/Genes/TACC1ID42456ch8p11.html DOI: 10.4267/2042/44620 This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 2.0 France Licence. © 2009 Atlas of Genetics and Cytogenetics in Oncology and Haematology Identity Note: - AK304507 and AK303596 sequences may be suspect Other names: Ga55; DKFZp686K18126; KIAA1103 (see UCSC Genome Bioinformatics Site HGNC (Hugo): TACC1 (http://genome.ucsc.edu) for more details. - Transcript/isoform nomenclature as per Line et al, Location: 8p11.23 2002 and Lauffart et al., 2006. TACC1F transcript Note: This gene has three proposed transcription start includes exon 1, 2 and 3 (correction to Fig 6 of Lauffart sites beginning at 38763938 bp, 38733914 bp, et al., 2006). 38705165 bp from pter. Pseudogene DNA/RNA Partially processed pseudogene: - 91% identity corresponding to base 596 to 2157 of Description AF049910. The gene is composed of 19 exons spanning 124.5 kb. Location: 10p11.21. Location base pair: starts at 37851943 and ends at Transcription 37873633 from pter (according to hg18-March_2006). -
Autophagy Processes Are Dependent on EGF Receptor Signaling
www.oncotarget.com Oncotarget, 2018, Vol. 9, (No. 54), pp: 30289-30303 Research Paper Autophagy processes are dependent on EGF receptor signaling Vincenzo De Iuliis1, Antonio Marino1, Marika Caruso1, Sabrina Capodifoglio1, Vincenzo Flati2, Anna Marynuk3, Valeria Marricareda3, Sebastiano Ursi1, Paola Lanuti4, Claudio Talora5, Pio Conti6, Stefano Martinotti1,7 and Elena Toniato7 1Unit of Predictive Medicine, SS Annunziata University Hospital of Chieti, Chieti, Italy 2Department of Biotechnological and Applied Clinical Sciences, University of L’Aquila, L’Aquila, Italy 3Odessa National Medical University, Odesa, Odessa Oblsat, Ucraina 4Department of Medicine and Aging Sciences, University G. d’Annunzio of Chieti, Chieti, Italy 5Department of Molecular Medicine, University of Rome “La Sapienza”, Rome, Italy 6Postgraduate Medical School, University of Chieti, Chieti, Italy 7Department of Medical, Oral and Biotechnological Sciences, University G. d’Annunzio of Chieti, Chieti, Italy Correspondence to: Elena Toniato, email: [email protected] Keywords: apoptosis; autophagy; Beclin 1; EGF receptor; MAPK pathway Received: May 03, 2018 Accepted: June 13, 2018 Published: July 13, 2018 Copyright: De Iuliis et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ABSTRACT Autophagy is a not well-understood conserved mechanism activated during nutritional deprivation in order to maintain cellular homeostasis. In the present study, we investigated the correlations between autophagy, apoptosis and the MAPK pathways in melanoma cell lines. We demonstrated that during starvation the EGF receptor mediated signaling activates many proteins involved in the MAPK pathway. -
The FGF/FGFR System in Breast Cancer: Oncogenic Features and Therapeutic Perspectives
cancers Review The FGF/FGFR System in Breast Cancer: Oncogenic Features and Therapeutic Perspectives Maria Francesca Santolla and Marcello Maggiolini * Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, 87036 Rende, Italy; [email protected] * Correspondence: [email protected] or [email protected] Received: 8 September 2020; Accepted: 16 October 2020; Published: 18 October 2020 Simple Summary: The fibroblast growth factor/fibroblast growth factor receptor (FGF/FGFR) system represents an emerging therapeutic target in breast cancer. Here, we discussed previous studies dealing with FGFR molecular aberrations, the alterations in the FGF/FGFR signaling across the different subtypes of breast cancer, the functional interplay between the FGF/FGFR axis and important components of the breast microenvironment, the therapeutic usefulness of FGF/FGFR inhibitors for the treatment of breast cancer. Abstract: One of the major challenges in the treatment of breast cancer is the heterogeneous nature of the disease. With multiple subtypes of breast cancer identified, there is an unmet clinical need for the development of therapies particularly for the less tractable subtypes. Several transduction mechanisms are involved in the progression of breast cancer, therefore making the assessment of the molecular landscape that characterizes each patient intricate. Over the last decade, numerous studies have focused on the development of tyrosine kinase inhibitors (TKIs) to target the main pathways dysregulated in breast cancer, however their effectiveness is often limited either by resistance to treatments or the appearance of adverse effects. In this context, the fibroblast growth factor/fibroblast growth factor receptor (FGF/FGFR) system represents an emerging transduction pathway and therapeutic target to be fully investigated among the diverse anti-cancer settings in breast cancer. -
Leukocyte Cytoskeleton Polarization Is Initiated by Plasma Membrane Curvature from Cell Attachment
Article Leukocyte Cytoskeleton Polarization Is Initiated by Plasma Membrane Curvature from Cell Attachment Graphical Abstract Authors Chunguang Ren, Qianying Yuan, Martha Braun, ..., Erdem Karatekin, Wenwen Tang, Dianqing Wu Correspondence [email protected] (E.K.), [email protected] (W.T.), [email protected] (D.W.) In Brief The molecular mechanisms controlling cell polarization are incompletely understood. Ren and Yuan et al. show that local increase in plasma membrane (PM) curvature resulting from cell attachment recruits and polarizes an inverse FBAR domain protein SRGAP2 to initiate cell cytoskeleton polarization, which is important for neutrophil adhesion to endothelium. Highlights d Cell attachment is required for chemical-induced cytoskeleton polarization d Cell attachment induces local PM curvature increase to recruit and polarize SRGAP2 d Polarized SRGAP2 induces sequential polarization of PtdIns4P, PIP5K1C90, and pMLC d This SRGAP2 polarization signaling axis regulates neutrophil firm adhesion Ren et al., 2019, Developmental Cell 49, 1–14 April 22, 2019 ª 2019 Elsevier Inc. https://doi.org/10.1016/j.devcel.2019.02.023 Please cite this article in press as: Ren et al., Leukocyte Cytoskeleton Polarization Is Initiated by Plasma Membrane Curvature from Cell Attachment, Developmental Cell (2019), https://doi.org/10.1016/j.devcel.2019.02.023 Developmental Cell Article Leukocyte Cytoskeleton Polarization Is Initiated by Plasma Membrane Curvature from Cell Attachment Chunguang Ren,1,16 Qianying Yuan,1,16 Martha Braun,2,3,14 Xia -
TACC2 Antibody
Product Datasheet TACC2 Antibody Catalog No: #AB43154 Orders: [email protected] Description Support: [email protected] Product Name TACC2 Antibody Host Species Rabbit Clonality Polyclonal Purification Antigen affinity purification. Applications WB IHC Species Reactivity Hu Ms Specificity The antibody detects endogenous levels of total TACC2 protein. Immunogen Type peptide Immunogen Description Synthetic peptide of human TACC2 Target Name TACC2 Other Names AZU-1; ECTACC Accession No. Swiss-Prot#: O95359Gene ID: 10579 Calculated MW 310kd Concentration 2mg/ml Formulation Rabbit IgG in pH7.4 PBS, 0.05% NaN3, 40% Glycerol. Storage Store at -20°C Application Details Western blotting: 1:200-1:1000 Immunohistochemistry: 1:25-1:100 Images Gel: 6%SDS-PAGE Lysate: 40 µg Lane: Mouse muscle tissue Primary antibody: 1/300 dilution Secondary antibody: Goat anti rabbit IgG at 1/8000 dilution Exposure time: 5 minutes Address: 8400 Baltimore Ave. Suite 302 College Park MD 20740 USA http://www.abscitech.com 1 Immunohistochemical analysis of paraffin-embedded Human liver cancer tissue using #43154 at dilution 1/30. Immunohistochemical analysis of paraffin-embedded Human esophagus cancer tissue using #43154 at dilution 1/30. Background Transforming acidic coiled-coil proteins are a conserved family of centrosome- and microtubule-interacting proteins that are implicated in cancer. This gene encodes a protein that concentrates at centrosomes throughout the cell cycle. This gene lies within a chromosomal region associated with tumorigenesis. Expression of this gene is induced by erythropoietin and is thought to affect the progression of breast tumors. Several transcript variants encoding different isoforms have been found for this gene.? Note: This product is for in vitro research use only and is not intended for use in humans or animals. -
Proteomic Landscape of Tissue-Specific Cyclin E Functions in Vivo
RESEARCH ARTICLE Proteomic Landscape of Tissue-Specific Cyclin E Functions in Vivo Junko Odajima1,2, Siddharth Saini3, Piotr Jung1,2, Yasmine Ndassa-Colday1,4, Scott Ficaro1,4, Yan Geng1,2, Eugenio Marco5, Wojciech Michowski1,2, Yaoyu E. Wang6, James A. DeCaprio7, Larisa Litovchick3, Jarrod Marto1,4, Piotr Sicinski1,2* 1 Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America, 2 Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America, 3 Department of Internal Medicine and Massey Cancer Center, Virginia Commonwealth University, Richmond, Virginia, United States of America, 4 Department of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, United States of America, 5 Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America, 6 Center for Cancer Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America, 7 Department of a11111 Medical Oncology, Dana-Farber Cancer Institute, and Department of Medicine, Harvard Medical School, Boston, Massachusetts, United States of America * [email protected] Abstract OPEN ACCESS E-type cyclins (cyclins E1 and E2) are components of the cell cycle machinery that has Citation: Odajima J, Saini S, Jung P, Ndassa- Colday Y, Ficaro S, Geng Y, et al. (2016) Proteomic been conserved from yeast to humans. The major function of E-type cyclins is to drive cell Landscape of Tissue-Specific Cyclin E Functions in division. It is unknown whether in addition to their `core' cell cycle functions, E-type cyclins Vivo. PLoS Genet 12(11): e1006429. -
Methylation of Leukocyte DNA and Ovarian Cancer
Fridley et al. BMC Medical Genomics 2014, 7:21 http://www.biomedcentral.com/1755-8794/7/21 RESEARCH ARTICLE Open Access Methylation of leukocyte DNA and ovarian cancer: relationships with disease status and outcome Brooke L Fridley1*, Sebastian M Armasu2, Mine S Cicek2, Melissa C Larson2, Chen Wang2, Stacey J Winham2, Kimberly R Kalli3, Devin C Koestler1,4, David N Rider2, Viji Shridhar5, Janet E Olson2, Julie M Cunningham5 and Ellen L Goode2 Abstract Background: Genome-wide interrogation of DNA methylation (DNAm) in blood-derived leukocytes has become feasible with the advent of CpG genotyping arrays. In epithelial ovarian cancer (EOC), one report found substantial DNAm differences between cases and controls; however, many of these disease-associated CpGs were attributed to differences in white blood cell type distributions. Methods: We examined blood-based DNAm in 336 EOC cases and 398 controls; we included only high-quality CpG loci that did not show evidence of association with white blood cell type distributions to evaluate association with case status and overall survival. Results: Of 13,816 CpGs, no significant associations were observed with survival, although eight CpGs associated with survival at p < 10−3, including methylation within a CpG island located in the promoter region of GABRE (p = 5.38 x 10−5, HR = 0.95). In contrast, 53 CpG methylation sites were significantly associated with EOC risk (p <5 x10−6). The top association was observed for the methylation probe cg04834572 located approximately 315 kb upstream of DUSP13 (p = 1.6 x10−14). Other disease-associated CpGs included those near or within HHIP (cg14580567; p =5.6x10−11), HDAC3 (cg10414058; p = 6.3x10−12), and SCR (cg05498681; p = 4.8x10−7).