Colletotrichum Tropicale Rojas, Rehner & Samuels 2010
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Diversification of Fungal Chitinases and Their Functional Differentiation in 2 Histoplasma Capsulatum 3
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.09.137125; this version posted June 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 Diversification of fungal chitinases and their functional differentiation in 2 Histoplasma capsulatum 3 4 Kristie D. Goughenour1*, Janice Whalin1, 5 Jason C. Slot2, Chad A. Rappleye1# 6 7 1 Department of Microbiology, Ohio State University 8 2 Department of Plant Pathology, Ohio State University 9 10 11 #corresponding author: 12 [email protected] 13 614-247-2718 14 15 *current affiliation: 16 Division of Pulmonary and Critical Care Medicine 17 University of Michigan 18 VA Ann Arbor Healthcare System, Research Service 19 Ann Arbor, Michigan, USA 20 21 22 running title: Fungal chitinases 23 24 keywords: chitinase, GH18, fungi, Histoplasma 25 bioRxiv preprint doi: https://doi.org/10.1101/2020.06.09.137125; this version posted June 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 26 ABSTRACT 27 Chitinases enzymatically hydrolyze chitin, a highly abundant biomolecule with many potential 28 industrial and medical uses in addition to their natural biological roles. Fungi are a rich source of 29 chitinases, however the phylogenetic and functional diversity of fungal chitinases are not well 30 understood. -
Monilochaetes and Allied Genera of the Glomerellales, and a Reconsideration of Families in the Microascales
available online at www.studiesinmycology.org StudieS in Mycology 68: 163–191. 2011. doi:10.3114/sim.2011.68.07 Monilochaetes and allied genera of the Glomerellales, and a reconsideration of families in the Microascales M. Réblová1*, W. Gams2 and K.A. Seifert3 1Department of Taxonomy, Institute of Botany of the Academy of Sciences, CZ – 252 43 Průhonice, Czech Republic; 2Molenweg 15, 3743CK Baarn, The Netherlands; 3Biodiversity (Mycology and Botany), Agriculture and Agri-Food Canada, Ottawa, Ontario, K1A 0C6, Canada *Correspondence: Martina Réblová, [email protected] Abstract: We examined the phylogenetic relationships of two species that mimic Chaetosphaeria in teleomorph and anamorph morphologies, Chaetosphaeria tulasneorum with a Cylindrotrichum anamorph and Australiasca queenslandica with a Dischloridium anamorph. Four data sets were analysed: a) the internal transcribed spacer region including ITS1, 5.8S rDNA and ITS2 (ITS), b) nc28S (ncLSU) rDNA, c) nc18S (ncSSU) rDNA, and d) a combined data set of ncLSU-ncSSU-RPB2 (ribosomal polymerase B2). The traditional placement of Ch. tulasneorum in the Microascales based on ncLSU sequences is unsupported and Australiasca does not belong to the Chaetosphaeriaceae. Both holomorph species are nested within the Glomerellales. A new genus, Reticulascus, is introduced for Ch. tulasneorum with associated Cylindrotrichum anamorph; another species of Reticulascus and its anamorph in Cylindrotrichum are described as new. The taxonomic structure of the Glomerellales is clarified and the name is validly published. As delimited here, it includes three families, the Glomerellaceae and the newly described Australiascaceae and Reticulascaceae. Based on ITS and ncLSU rDNA sequence analyses, we confirm the synonymy of the anamorph generaDischloridium with Monilochaetes. -
Colletotrichum – Names in Current Use
Online advance Fungal Diversity Colletotrichum – names in current use Hyde, K.D.1,7*, Cai, L.2, Cannon, P.F.3, Crouch, J.A.4, Crous, P.W.5, Damm, U. 5, Goodwin, P.H.6, Chen, H.7, Johnston, P.R.8, Jones, E.B.G.9, Liu, Z.Y.10, McKenzie, E.H.C.8, Moriwaki, J.11, Noireung, P.1, Pennycook, S.R.8, Pfenning, L.H.12, Prihastuti, H.1, Sato, T.13, Shivas, R.G.14, Tan, Y.P.14, Taylor, P.W.J.15, Weir, B.S.8, Yang, Y.L.10,16 and Zhang, J.Z.17 1,School of Science, Mae Fah Luang University, Chaing Rai, Thailand 2Research & Development Centre, Novozymes, Beijing 100085, PR China 3CABI, Bakeham Lane, Egham, Surrey TW20 9TY, UK and Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, UK 4Cereal Disease Laboratory, U.S. Department of Agriculture, Agricultural Research Service, 1551 Lindig Street, St. Paul, MN 55108, USA 5CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 6School of Environmental Sciences, University of Guelph, Guelph, Ontario, N1G 2W1, Canada 7International Fungal Research & Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Bailongsi, Kunming 650224, PR China 8Landcare Research, Private Bag 92170, Auckland 1142, New Zealand 9BIOTEC Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology, NSTDA, 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand 10Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou 550006 PR China 11Hokuriku Research Center, National Agricultural Research Center, -
Download from Genbank, and the Outgroup Monilochaetes Infuscans CBS 379.77 and CBS , RNA Polymerase II Second Largest Subunit
Mycological Progress (2019) 18:1135–1154 https://doi.org/10.1007/s11557-019-01511-4 ORIGINAL ARTICLE New plectosphaerellaceous species from Dutch garden soil Alejandra Giraldo1,2 & Margarita Hernández-Restrepo1 & Pedro W. Crous1,2,3 Received: 8 April 2019 /Revised: 17 July 2019 /Accepted: 2 August 2019 # The Author(s) 2019 Abstract During 2017, the Westerdijk Fungal Biodiversity Institute (WI) and the Utrecht University Museum launched a Citizen Science project. Dutch school children collected soil samples from gardens at different localities in the Netherlands, and submitted them to the WI where they were analysed in order to find new fungal species. Around 3000 fungal isolates, including filamentous fungi and yeasts, were cultured, preserved and submitted for DNA sequencing. Through analysis of the ITS and LSU sequences from the obtained isolates, several plectosphaerellaceous fungi were identified for further study. Based on morphological characters and the combined analysis of the ITS and TEF1-α sequences, some isolates were found to represent new species in the genera Phialoparvum,i.e.Ph. maaspleinense and Ph. rietveltiae,andPlectosphaerella,i.e.Pl. hanneae and Pl. verschoorii, which are described and illustrated here. Keywords Biodiversity . Citizen Science project . Phialoparvum . Plectosphaerella . Soil-born fungi Introduction phylogenetic fungal lineages in soil-inhabiting fungi (Tedersoo et al. 2017). Soil is one of the main reservoirs of fungal species and Among Ascomycota, the family Plectosphaerellaceae commonly ranks as the most abundant source regarding (Glomerellales, Sordariomycetes) harbours important plant fungal biomass and physiological activity. Fungal diver- pathogens such as Verticillium dahliae, V. alboatrum and sity is affected by the variety of microscopic habitats and Plectosphaerella cucumerina, but also several saprobic genera microenvironments present in soils (Anderson and usually found in soil, i.e. -
Colletotrichum Grevilleae F
-- CALIFORNIA D EP ARTM ENT OF cdfaFOOD & AGRICULTURE ~ California Pest Rating Proposal for Colletotrichum grevilleae F. Liu, Damm, L. Cai & Crous 2013 Anthracnose of grevillea Current Pest Rating: Q Proposed Pest Rating: B Kingdom: Fungi, Division: Ascomycota Class: Sordariomycetes, Order: Glomerellales Family: Glomerellaceae Comment Period: 7/17/2020 through 8/31/2020 Initiating Event: On February 11, 2020, Riverside County Agricultural Inspectors submitted a sample of areca palm, Dypsis lutescens, recently imported from Florida as nursery stock. On February 19, 2020, Santa Barbara County Agricultural Inspectors submitted a sample of a “palm frond” from the Island of Kauai, Hawaii, that was part of a shipment of cut flowers. On March 10, 2020, CDFA plant pathologist Albre Brown identified the cause of the leaf spots on both as Colletotrichum grevilleae via morphological comparison and a multi-locus genetic analysis. This species had not previously been reported in the United States and was assigned a temporary Q-rating. On May 4, 2020, Orange County Agricultural Inspectors submitted a sample of majesty palm, Ravenea rivularis, with leaf spots collected from nursery stock arriving from Alabama. On June 4, 2020, this sample was also identified as C. grevilleae by DNA sequencing and multigene analysis. We are identifying this pathogen on palms for the first time and the extent of its host range remains undetermined. The risk to California from C. grevilleae is described herein and a permanent rating is proposed. History & Status: Background: Grevillea is a diverse genus of about 360 species of evergreen flowering plants in the family Proteaceae, native to rainforest and open habitats in Australia, New Guinea, New Caledonia, Sulawesi, -- CALIFORNIA D EP ARTM ENT OF cdfaFOOD & AGRICULTURE ~ and other Indonesian islands. -
Colletotrichum: a Catalogue of Confusion
Online advance Fungal Diversity Colletotrichum: a catalogue of confusion Hyde, K.D.1,2*, Cai, L.3, McKenzie, E.H.C.4, Yang, Y.L.5,6, Zhang, J.Z.7 and Prihastuti, H.2,8 1International Fungal Research & Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Bailongsi, Kunming 650224, PR China 2School of Science, Mae Fah Luang University, Thasud, Chiang Rai 57100, Thailand 3Novozymes China, No. 14, Xinxi Road, Shangdi, HaiDian, Beijing, 100085, PR China 4Landcare Research, Private Bag 92170, Auckland, New Zealand 5Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou 550006 PR China 6Department of Biology and Geography, Liupanshui Normal College. Shuicheng, Guizhou 553006, P.R. China 7Institute of Biotechnology, College of Agriculture & Biotechnology, Zhejiang University, Kaixuan Rd 258, Hangzhou 310029, PR China 8Department of Biotechnology, Faculty of Agriculture, Brawijaya University, Malang 65145, Indonesia Hyde, K.D., Cai, L., McKenzie, E.H.C., Yang, Y.L., Zhang, J.Z. and Prihastuti, H. (2009). Colletotrichum: a catalogue of confusion. Fungal Diversity 39: 1-17. Identification of Colletotrichum species has long been difficult due to limited morphological characters. Single gene phylogenetic analyses have also not proved to be very successful in delineating species. This may be partly due to the high level of erroneous names in GenBank. In this paper we review the problems associated with taxonomy of Colletotrichum and difficulties in identifying taxa to species. We advocate epitypification and use of multi-locus phylogeny to delimit species and gain a better understanding of the genus. We review the lifestyles of Colletotrichum species, which may occur as epiphytes, endophytes, saprobes and pathogens. -
Colletotrichum Truncatum (Schwein.) Andrus & W.D
-- CALIFORNIA D EPAUMENT OF cdfa FOOD & AGRICULTURE ~ California Pest Rating Proposal for Colletotrichum truncatum (Schwein.) Andrus & W.D. Moore 1935 Soybean anthracnose Current Pest Rating: Q Proposed Pest Rating: B Domain: Eukaryota, Kingdom: Fungi, Phylum: Ascomycota, Subphylum: Pezizomycotina, Class: Sordariomycetes, Subclass: Sordariomycetidae, Family: Glomerellaceae Comment Period: 02/02/2021 through 03/19/2021 Initiating Event: In 2003, an incoming shipment of Jatropha plants from Costa Rica was inspected by a San Luis Obispo County agricultural inspector. The inspector submitted leaves showing dieback symptoms to CDFA’s Plant pest diagnostics center for diagnosis. From the leaf spots, CDFA plant pathologist Timothy Tidwell identified the fungal pathogen Colletotrichum capsici, which was not known to be present in California, and assigned a temporary Q rating. In 2015, a sample was submitted by Los Angeles County agricultural inspectors from Ficus plants shipping from Florida. Plant Pathologist Suzanne Latham diagnosed C. truncatum, a species that was synonymized with C. capsisi in 2009, from the leaf spots. She was able to culture the fungus from leaf spots and confirm its identity by PCR and DNA sequencing. Between 2016 and 2020, multiple samples of alfalfa plants from Imperial County with leafspots and dieback were submitted to the CDFA labs as part of the PQ seed quarantine program with infections from C. truncatum. Seed mother plants must be free-from specific disease of quarantine significance in order to be given phytosanitary certificates for export. Although not a pest of concern for alfalfa, C. truncatum is on the list for beans grown for export seed. The risk to California from C. -
Notes on Currently Accepted Species of Colletotrichum
Mycosphere 7(8) 1192-1260(2016) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/si/2c/9 Copyright © Guizhou Academy of Agricultural Sciences Notes on currently accepted species of Colletotrichum Jayawardena RS1,2, Hyde KD2,3, Damm U4, Cai L5, Liu M1, Li XH1, Zhang W1, Zhao WS6 and Yan JY1,* 1 Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, People’s Republic of China 2 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3 Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China 4 Senckenberg Museum of Natural History Görlitz, PF 300 154, 02806 Görlitz, Germany 5State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China 6Department of Plant Pathology, College of Plant Protection, China Agricultural University, Beijing 100193, China. Jayawardena RS, Hyde KD, Damm U, Cai L, Liu M, Li XH, Zhang W, Zhao WS, Yan JY 2016 – Notes on currently accepted species of Colletotrichum. Mycosphere 7(8) 1192–1260, Doi 10.5943/mycosphere/si/2c/9 Abstract Colletotrichum is an economically important plant pathogenic genus worldwide, but can also have endophytic or saprobic lifestyles. The genus has undergone numerous revisions in the past decades with the addition, typification and synonymy of many species. In this study, we provide an account of the 190 currently accepted species, one doubtful species and one excluded species that have molecular data. Species are listed alphabetically and annotated with their habit, host and geographic distribution, phylogenetic position, their sexual morphs and uses (if there are any known). -
Natural Sources and Bioactivities of 2,4-Di-Tert-Butylphenol and Its Analogs
toxins Review Natural Sources and Bioactivities of 2,4-Di-Tert-Butylphenol and Its Analogs Fuqiang Zhao 1,2, Ping Wang 3, Rima D. Lucardi 4 , Zushang Su 3 and Shiyou Li 3,* 1 College of Life Science and Bioengineering, Shenyang University, Shenyang 110044, Liaoning, China; [email protected] 2 CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, Liaoning, China 3 National Center for Pharmaceutical Crops, Arthur Temple College of Forestry and Agriculture, Stephen F. Austin State University, Nacogdoches, TX 75962, USA; [email protected] (P.W.); [email protected] (Z.S.) 4 Southern Research Station, USDA Forest Service, 320 Green Street, Athens, GA 30602, USA; [email protected] * Correspondence: [email protected] Received: 8 October 2019; Accepted: 16 December 2019; Published: 6 January 2020 Abstract: 2,4-Di-tert-butylphenol or 2,4-bis(1,1-dimethylethyl)-phenol (2,4-DTBP) is a common toxic secondary metabolite produced by various groups of organisms. The biosources and bioactivities of 2,4-DTBP have been well investigated, but the phenol has not been systematically reviewed. This article provides a comprehensive review of 2,4-DTBP and its analogs with emphasis on natural sources and bioactivities. 2,4-DTBP has been found in at least 169 species of bacteria (16 species, 10 families), fungi (11 species, eight families), diatom (one species, one family), liverwort (one species, one family), pteridiphyta (two species, two families), gymnosperms (four species, one family), dicots (107 species, 58 families), monocots (22 species, eight families), and animals (five species, five families). -
Colletotrichum: Biological Control, Bio- Catalyst, Secondary Metabolites and Toxins
Mycosphere 7(8) 1164-1176(2016) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/si/2c/7 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere Essay 16: Colletotrichum: Biological control, bio- catalyst, secondary metabolites and toxins Jayawardena RS1,2, Li XH1, Liu M1, Zhang W1 and Yan JY1* 1 Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, People’s Republic of China 2 Center of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand Jayawardena RS, Li XH, Liu M, Zhang W, Yan JY 2016 – Mycosphere Essay 16: Colletotrichum: Biological control, bio-catalyst, secondary metabolites and toxins. Mycosphere 7(8) 1164–1176, Doi 10.5943/mycosphere/si/2c/7 Abstract The genus Colletotrichum has received considerable attention in the past decade because of its role as an important plant pathogen. The importance of Colletotrichum with regard to industrial application has however, received little attention from scientists over many years. The aim of the present paper is to explore the importance of Colletotrichum species as bio-control agents and as a bio-catalyst as well as secondary metabolites and toxin producers. Often the names assigned to the above four industrial applications have lacked an accurate taxonomic basis and this needs consideration. The current paper provides detailed background of the above topics. Key words – biotransformation – colletotrichin – mycoherbicide – mycoparasites – pathogenisis – phytopathogen Introduction Colletotrichum was introduced by Corda (1831), and is a coelomycete belonging to the family Glomerellaceae (Maharachchikumbura et al. 2015, 2016). Species of this genus are widely known as pathogens of economical crops worldwide (Cannon et al. -
Colletotrichum Graminicola
Apr 19Pathogen of the month – April 2019 SH V (1914) a b c d e Fig. 1. (a) Colletotrichum graminicola asexual falcate conidia stained with calcofluor white; (b) acervuli with setae; (c) cross section of an acervulus (black arrow); (d) lobed, melanized appressoria, and (e) intracellular hyphae in a mesophyll cell. Note two distinct types of hyphae: vesicles (V; also known as biotrophic hyphae) and necrotrophic secondary hyphae (SH). Figs (b-e) were observed on maize leaf sheaths. Figs (b- e) were cleared in chloral hydrate and (d-e) stained with lactophenol blue. Wilson Wilson Common Name: Maize anthracnose fungus Disease: Maize Anthracnose; Anthracnose leaf blight (ALB); anthracnose stalk rot (ASR) Classification: K: Fungi P: Ascomycota C: Sordariomycetes O:Glomerellales F: Glomerellaceae The hemibiotrophic fungal pathogen, Colletotrichum graminicola (Teleomorph – Glomerella graminicola D.J. Politis G.W (1975)) causes anthracnose in maize (corn) and is a major problem as some varieties of engineered maize seem more susceptible to infection resulting in increasing economic concerns in the US. With a 57.4-Mb genome .) .) distributed among 13 chromosomes, it belongs to the graminicola species complex with other 14 closely related species. Such graminicolous Colletotrichum species infect other cereals and grasses such as C. sublineolum in sorghum, C. falcatum in sugarcane and C. cereale in wheat and turfgrass. Of the 44 Colletotrichum species that exist in Australia, graminicolous Colletotrichum isolates still need to be verified in the Australian collection. Ces Biology and Ecology: of pith tissue in the corn stalk around the stalk internodes. ( The fungus forms fluffly aerial mycelium and produces two Maize roots can be infected by the fungus leading to differently shaped hyaline conidia: (a) falcate (24-30 x 4-5 asymptomatic systemic colonization of the plants. -
Characterization of Colletotrichum Ocimi Population Associated with Black Spot of Sweet Basil (Ocimum Basilicum) in Northern Italy
plants Article Characterization of Colletotrichum ocimi Population Associated with Black Spot of Sweet Basil (Ocimum basilicum) in Northern Italy Santa Olga Cacciola 1,*, Giovanna Gilardi 2 , Roberto Faedda 1 , Leonardo Schena 3 , Antonella Pane 1 , Angelo Garibaldi 2 and Maria Lodovica Gullino 2 1 Department of Agriculture, Food and Environment, University of Catania, 95123 Catania, Italy; [email protected] (R.F.); [email protected] (A.P.) 2 Agroinnova—Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, 10095 Turin, Italy; [email protected] (G.G.); [email protected] (A.G.); [email protected] (M.L.G.) 3 Department of Agriculture, Università degli Studi Mediterranea di Reggio Calabria, 89124 Reggio Calabria, Italy; [email protected] * Correspondence: [email protected] Received: 18 April 2020; Accepted: 17 May 2020; Published: 22 May 2020 Abstract: Black spot is a major foliar disease of sweet basil (Ocimum basilicum) present in a typical cultivation area of northern Italy, including the Liguria and southern Piedmont regions, where this aromatic herb is an economically important crop. In this study, 15 Colletotrichum isolates obtained from sweet basil plants with symptoms of black spot sampled in this area were characterized morphologically and by nuclear DNA analysis using internal transcribed spacers (ITS) and intervening 5.8S nrDNA as well as part of the β-tubulin gene (TUB2) regions as barcode markers. Analysis revealed all but one isolate belonged to the recently described species C. ocimi of the C. destructivum species complex. Only one isolate was identified as C. destructivum sensu stricto (s.s.).