Genomic Takeover by Transposable Elements in the Strawberry Poison Frog Rebekah L. Rogers,†,1 Long Zhou,†,2,3 Chong Chu,4 Roberto Marquez,5 Ammon Corl,6 Tyler Linderoth,6 Layla Freeborn,7 Matthew D. MacManes,8,9 Zijun Xiong,2 Jiao Zheng,2 Chunxue Guo,2 Xu Xun,2 Marcus R. Kronforst,5 Kyle Summers,10 Yufeng Wu,11 Huanming Yang,2,12 Corinne L. Richards-Zawacki,‡,7 Guojie Zhang,‡,2,3,13 and Rasmus Nielsen*,6 1Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC 2State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China 3China National Genebank, BGI-Shenzhen, Shenzhen, Guangdong, China 4Harvard Medical School, Harvard University, Cambridge, MA 5Department of Ecology and Evolution, University of Chicago, Chicago, IL 6Department of Integrative Biology, University of California, Berkeley, Berkeley, CA 7Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 8Department of Molecular Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH 9Hubbard Center for Genomic Studies, University of New Hampshire, Durham, NH 10Department of Biology, Eastern Carolina University, Greenville, NC 11Department of Computer Science, University of Connecticut, Storrs, CT 12James D. Watson Institute of Genome Sciences, Hangzhou, China 13Department of Biology, Centre for Social Evolution, Universitetsparken 15, University of Copenhagen, Copenhagen, Denmark †These authors are co-first authors. ‡These authors are co-corresponding authors. *Corresponding author: E-mail:
[email protected] Associate editor: Juliette de Meaux Abstract We sequenced the genome of the strawberry poison frog, Oophaga pumilio, at a depth of 127.5Â using variable insert size libraries.