Toxins and Drug Discovery
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Protein Complex Formation by Acetylcholinesterase and the Neurotoxin Fasciculin-2 Appears to Involve an Induced-Fit Mechanism
Protein complex formation by acetylcholinesterase and the neurotoxin fasciculin-2 appears to involve an induced-fit mechanism Jennifer M. Bui†‡ and J. Andrew McCammon†§ †Department of Chemistry and Biochemistry, Howard Hughes Medical Institute, and §Department of Pharmacology, University of California at San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0365 Edited by Jose N. Onuchic, University of California at San Diego, La Jolla, CA, and approved August 22, 2006 (received for review June 27, 2006) Specific, rapid association of protein complexes is essential for all forms of cellular existence. The initial association of two molecules in diffusion-controlled reactions is often influenced by the elec- trostatic potential. Yet, the detailed binding mechanisms of pro- teins highly depend on the particular system. A complete protein complex formation pathway has been delineated by using struc- tural information sampled over the course of the transformation reaction. The pathway begins at an encounter complex that is formed by one of the apo forms of neurotoxin fasciculin-2 (FAS2) and its high-affinity binding protein, acetylcholinesterase (AChE), followed by rapid conformational rearrangements into an inter- mediate complex that subsequently converts to the final complex as observed in crystal structures. Formation of the intermediate complex has also been independently captured in a separate 20-ns Fig. 1. Thermodynamic cycle for AB* complex formation reactions. A and B BIOPHYSICS molecular dynamics simulation of the encounter complex. Confor- molecules can be considered as any pair of interacting molecules. mational transitions between the apo and liganded states of FAS2 in the presence and absence of AChE are described in terms of their relative free energy profiles that link these two states. -
Comparison of the Binding of Reversible Inhibitors to Human Butyrylcholinesterase and Acetylcholinesterase: a Crystallographic, Kinetic and Calorimetric Study
Article Comparison of the Binding of Reversible Inhibitors to Human Butyrylcholinesterase and Acetylcholinesterase: A Crystallographic, Kinetic and Calorimetric Study Terrone L. Rosenberry 1, Xavier Brazzolotto 2, Ian R. Macdonald 3, Marielle Wandhammer 2, Marie Trovaslet-Leroy 2,†, Sultan Darvesh 4,5,6 and Florian Nachon 2,* 1 Departments of Neuroscience and Pharmacology, Mayo Clinic College of Medicine, Jacksonville, FL 32224, USA; [email protected] 2 Département de Toxicologie et Risques Chimiques, Institut de Recherche Biomédicale des Armées, 91220 Brétigny-sur-Orge, France; [email protected] (X.B.); [email protected] (M.W.); [email protected] (M.T.-L.) 3 Department of Diagnostic Radiology, Dalhousie University, Halifax, NS B3H 4R2, Canada; [email protected] 4 Department of Medical Neuroscience, Dalhousie University, Halifax, NS B3H 4R2, Canada; [email protected] 5 Department of Chemistry, Mount Saint Vincent University, Halifax, NS B3M 2J6, Canada 6 Department of Medicine (Neurology and Geriatric Medicine), Dalhousie University, Halifax, NS B3H 4R2, Canada * Correspondence: [email protected]; Tel.: +33-178-65-1877 † Deceased October 2016. Received: 26 October 2017; Accepted: 27 November 2017; Published: 29 November 2017 Abstract: Acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) hydrolyze the neurotransmitter acetylcholine and, thereby, function as coregulators of cholinergic neurotransmission. Although closely related, these enzymes display very different substrate specificities that only partially overlap. This disparity is largely due to differences in the number of aromatic residues lining the active site gorge, which leads to large differences in the shape of the gorge and potentially to distinct interactions with an individual ligand. Considerable structural information is available for the binding of a wide diversity of ligands to AChE. -
Anti-Cholinergic Alkaloids As Potential Therapeutic Agents for Alzheimer's Disease
Indian Journal of Biochemistry & Biophysics Vol. 50, April 2013, pp. 120-125 Anti-cholinergic alkaloids as potential therapeutic agents for Alzheimer’s disease: An in silico approach Huma Naaz, Swati Singh, Veda P Pandey, Priyanka Singh and Upendra N Dwivedi* Bioinformatics Infrastructure Facility, Center of Excellence in Bioinformatics, Department of Biochemistry, University of Lucknow, Lucknow 226 007, India Received 10 September 2012; revised 25 January 2013 Alzheimer’s disease (AD), a progressive neurodegenerative disorder with many cognitive and neuropsychiatric symptoms is biochemically characterized by a significant decrease in the brain neurotransmitter acetylcholine (ACh). Plant-derived metabolites, including alkaloids have been reported to possess neuroprotective properties and are considered to be safe, thus have potential for developing effective therapeutic molecules for neurological disorders, such as AD. Therefore, in the present study, thirteen plant-derived alkaloids, namely pleiocarpine, kopsinine, pleiocarpamine (from Pleiocarpa mutica, family: Annonaceae), oliveroline, noroliveroline, liridonine, isooncodine, polyfothine, darienine (from Polyalthia longifolia, family: Apocynaceae) and eburnamine, eburnamonine, eburnamenine and geissoschizol (from Hunteria zeylanica, family: Apocynaceae) were analyzed for their anti-cholinergic action through docking with acetylcholinesterase (AChE) as target. Among the alkaloids, pleiocarpine showed promising anti-cholinergic potential, while its amino derivative showed about six-fold -
Oximes: Inhibitors of Human Recombinant Acetylcholinesterase
Int. J. Mol. Sci. 2013, 14, 16882-16900; doi:10.3390/ijms140816882 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article Oximes: Inhibitors of Human Recombinant Acetylcholinesterase. A Structure-Activity Relationship (SAR) Study Vendula Sepsova 1,†, Jana Zdarova Karasova 2,3, Jan Korabecny 1,3,†, Rafael Dolezal 3,†, Filip Zemek 1, Brian J. Bennion 4,† and Kamil Kuca 3,5,* 1 Department of Toxicology, Faculty of Military Health Sciences, University of Defence, Trebesska 1575, 500 01 Hradec Kralove, Czech Republic; E-Mails: [email protected] (V.S.); [email protected] (J.K.); [email protected] (F.Z.) 2 Department of Public Health, Faculty of Military Health Sciences, University of Defence, Trebesska 1575, 500 01 Hradec Kralove, Czech Republic; E-Mail: [email protected] 3 University Hospital, Biomedicinal Research Centre, Sokolska 581, 50005 Hradec Kralove, Czech Republic; E-Mail: [email protected] 4 Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Ave, Livermore, CA 94550, USA; E-Mail: [email protected] 5 Center of Advances Studies, Faculty of Military Health Sciences, University of Defence, Trebesska 1575, 500 01 Hradec Kralove, Czech Republic † These authors contributed equally to this work. * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +420-495-832-923; Fax: +420-495-518-094. Received: 8 May 2013; in revised form: 1 August 2013 / Accepted: 2 August 2013 / Published: 16 August 2013 Abstract: Acetylcholinesterase (AChE) reactivators were developed for the treatment of organophosphate intoxication. Standard care involves the use of anticonvulsants (e.g., diazepam), parasympatolytics (e.g., atropine) and oximes that restore AChE activity. -
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Quinone Methide Precursors as Realkylators of Acetylcholinesterase for Post-aging Treatment of Organophosphorus Poisoning DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Qinggeng Zhuang Graduate Program in Chemistry The Ohio State University 2017 Dissertation Committee: Professor Christopher M. Hadad, Advisor Professor Thomas J. Magliery Professor Kotaro Nakanishi Copyrighted by Qinggeng Zhuang 2017 Abstract Acetylcholinesterase (AChE) is a serine hydrolase found in brain synapses, neuromuscular junctions (NMJs) and erythrocytes. Its role is to silence nerve impulses by selectively hydrolyzing acetylcholine, a neurotransmitter. Inhibition of AChE can lead to accumulation of acetylcholine at synapses and NMJs; if left untreated, the symptoms can lead to death. Organophosphorus (OP) chemical nerve agents are a type of suicide inhibitors for AChE, leading to phosphylation of the catalytic serine; such phosphylation blocks the critical nucleophilic serine residue in the active site. OPs have been used as pesticides and chemical warfare agents, and exposure to these compounds results in the death of thousands of people every year. Clinically, OP poisoning can be treated by a combination of anti-cholinergic drugs and oximes. However, a dealkylation process referred to as aging can follow inhibition. To date, the aged form of AChE has been recalcitrant to reactivation by any oxime. A straightforward post-aging treatment is to reverse aging by realkylation of the oxyanion on the phosphylated adduct. Quinone methides (QMs) and quinone methide precursor (QMP) have been reported as alkylators of proteins and phosphates. These previous reports imply the possibility to realkylate aged AChE using a QM or QMP. -
Report from the 26Th Meeting on Toxinology,“Bioengineering Of
toxins Meeting Report Report from the 26th Meeting on Toxinology, “Bioengineering of Toxins”, Organized by the French Society of Toxinology (SFET) and Held in Paris, France, 4–5 December 2019 Pascale Marchot 1,* , Sylvie Diochot 2, Michel R. Popoff 3 and Evelyne Benoit 4 1 Laboratoire ‘Architecture et Fonction des Macromolécules Biologiques’, CNRS/Aix-Marseille Université, Faculté des Sciences-Campus Luminy, 13288 Marseille CEDEX 09, France 2 Institut de Pharmacologie Moléculaire et Cellulaire, Université Côte d’Azur, CNRS, Sophia Antipolis, 06550 Valbonne, France; [email protected] 3 Bacterial Toxins, Institut Pasteur, 75015 Paris, France; michel-robert.popoff@pasteur.fr 4 Service d’Ingénierie Moléculaire des Protéines (SIMOPRO), CEA de Saclay, Université Paris-Saclay, 91191 Gif-sur-Yvette, France; [email protected] * Correspondence: [email protected]; Tel.: +33-4-9182-5579 Received: 18 December 2019; Accepted: 27 December 2019; Published: 3 January 2020 1. Preface This 26th edition of the annual Meeting on Toxinology (RT26) of the SFET (http://sfet.asso.fr/ international) was held at the Institut Pasteur of Paris on 4–5 December 2019. The central theme selected for this meeting, “Bioengineering of Toxins”, gave rise to two thematic sessions: one on animal and plant toxins (one of our “core” themes), and a second one on bacterial toxins in honour of Dr. Michel R. Popoff (Institut Pasteur, Paris, France), both sessions being aimed at emphasizing the latest findings on their respective topics. Nine speakers from eight countries (Belgium, Denmark, France, Germany, Russia, Singapore, the United Kingdom, and the United States of America) were invited as international experts to present their work, and other researchers and students presented theirs through 23 shorter lectures and 27 posters. -
Toxicology in Antiquity
TOXICOLOGY IN ANTIQUITY Other published books in the History of Toxicology and Environmental Health series Wexler, History of Toxicology and Environmental Health: Toxicology in Antiquity, Volume I, May 2014, 978-0-12-800045-8 Wexler, History of Toxicology and Environmental Health: Toxicology in Antiquity, Volume II, September 2014, 978-0-12-801506-3 Wexler, Toxicology in the Middle Ages and Renaissance, March 2017, 978-0-12-809554-6 Bobst, History of Risk Assessment in Toxicology, October 2017, 978-0-12-809532-4 Balls, et al., The History of Alternative Test Methods in Toxicology, October 2018, 978-0-12-813697-3 TOXICOLOGY IN ANTIQUITY SECOND EDITION Edited by PHILIP WEXLER Retired, National Library of Medicine’s (NLM) Toxicology and Environmental Health Information Program, Bethesda, MD, USA Academic Press is an imprint of Elsevier 125 London Wall, London EC2Y 5AS, United Kingdom 525 B Street, Suite 1650, San Diego, CA 92101, United States 50 Hampshire Street, 5th Floor, Cambridge, MA 02139, United States The Boulevard, Langford Lane, Kidlington, Oxford OX5 1GB, United Kingdom Copyright r 2019 Elsevier Inc. All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or any information storage and retrieval system, without permission in writing from the publisher. Details on how to seek permission, further information about the Publisher’s permissions policies and our arrangements with organizations such as the Copyright Clearance Center and the Copyright Licensing Agency, can be found at our website: www.elsevier.com/permissions. This book and the individual contributions contained in it are protected under copyright by the Publisher (other than as may be noted herein). -
Structural Dynamics of Acetylcholinesterase and Its Implications in Reactivators Design Gianluca Santoni
Structural dynamics of acetylcholinesterase and its implications in reactivators design Gianluca Santoni To cite this version: Gianluca Santoni. Structural dynamics of acetylcholinesterase and its implications in reactivators design. Biomolecules [q-bio.BM]. Université Grenoble Alpes, 2015. English. NNT : 2015GREAY019. tel-01212481 HAL Id: tel-01212481 https://tel.archives-ouvertes.fr/tel-01212481 Submitted on 6 Oct 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE Pour obtenir le grade de DOCTEUR DE L’UNIVERSITÉ DE GRENOBLE Spécialité : Physique pour les sciences du vivant Arrêté ministériel : 7 Aout 2006 Présentée par Gianluca SANTONI Thèse dirigée par Martin WEIK et codirigée par Florian NACHON préparée au sein de l’Institut de Biologie Structurale de Grenoble et de l’école doctorale de physique Structural dynamics of acetyl- cholinesterase and its implications in reactivator design Thèse soutenue publiquement le 30/01/2015, devant le jury composé de : Dr. Yves Bourne Directeur de recherche CNRS, AFMB Marseille, Rapporteur Dr. Etienne Derat Maitre de conference, Université Pierre et Marie Curie, Paris, Rapporteur Prof. Pierre-Yves Renard Professeur, Université de Normandie, Rouen, Examinateur Prof. Israel Silman Professeur, Weizmann Institute of Science,Rehovot, Examinateur Dr. -
Acetylcholinesterase — New Roles for Gate a Relatively Long Distance to Reach the Active Site, Ache Is One of the Fastest an Old Actor Enzymes14
PERSPECTIVES be answered regarding AChE catalysis; for OPINION example, the mechanism behind the extremely fast turnover rate of the enzyme. Despite the fact that the substrate has to navi- Acetylcholinesterase — new roles for gate a relatively long distance to reach the active site, AChE is one of the fastest an old actor enzymes14. One theory to explain this phe- nomenon has to do with the unusually strong electric field of AChE. It has been argued that Hermona Soreq and Shlomo Seidman this field assists catalysis by attracting the cationic substrate and expelling the anionic The discovery of the first neurotransmitter — understanding of AChE functions beyond the acetate product15. Site-directed mutagenesis, acetylcholine — was soon followed by the classical view and suggest the molecular basis however, has indicated that reducing the elec- discovery of its hydrolysing enzyme, for its functional heterogeneity. tric field has no effect on catalysis16.However, acetylcholinesterase. The role of the same approach has indicated an effect on acetylcholinesterase in terminating From early to recent discoveries the rate of association of fasciculin, a peptide acetylcholine-mediated neurotransmission The unique biochemical properties and phys- that can inhibit AChE17. made it the focus of intense research for iological significance of AChE make it an much of the past century. But the complexity interesting target for detailed structure–func- of acetylcholinesterase gene regulation and tion analysis. AChE-coding sequences have recent evidence for some of the long- been cloned so far from a range of evolution- a Peripheral Choline binding site suspected ‘non-classical’ actions of this arily diverse vertebrate and invertebrate binding enzyme have more recently driven a species that include insects, nematodes, fish, site profound revolution in acetylcholinesterase reptiles, birds and several mammals, among Active site research. -
A Review of Chemical Defense in Poison Frogs (Dendrobatidae): Ecology, Pharmacokinetics, and Autoresistance
Chapter 21 A Review of Chemical Defense in Poison Frogs (Dendrobatidae): Ecology, Pharmacokinetics, and Autoresistance Juan C. Santos , Rebecca D. Tarvin , and Lauren A. O’Connell 21.1 Introduction Chemical defense has evolved multiple times in nearly every major group of life, from snakes and insects to bacteria and plants (Mebs 2002 ). However, among land vertebrates, chemical defenses are restricted to a few monophyletic groups (i.e., clades). Most of these are amphibians and snakes, but a few rare origins (e.g., Pitohui birds) have stimulated research on acquired chemical defenses (Dumbacher et al. 1992 ). Selective pressures that lead to defense are usually associated with an organ- ism’s limited ability to escape predation or conspicuous behaviors and phenotypes that increase detectability by predators (e.g., diurnality or mating calls) (Speed and Ruxton 2005 ). Defended organisms frequently evolve warning signals to advertise their defense, a phenomenon known as aposematism (Mappes et al. 2005 ). Warning signals such as conspicuous coloration unambiguously inform predators that there will be a substantial cost if they proceed with attack or consumption of the defended prey (Mappes et al. 2005 ). However, aposematism is likely more complex than the simple pairing of signal and defense, encompassing a series of traits (i.e., the apose- matic syndrome) that alter morphology, physiology, and behavior (Mappes and J. C. Santos (*) Department of Zoology, Biodiversity Research Centre , University of British Columbia , #4200-6270 University Blvd , Vancouver , BC , Canada , V6T 1Z4 e-mail: [email protected] R. D. Tarvin University of Texas at Austin , 2415 Speedway Stop C0990 , Austin , TX 78712 , USA e-mail: [email protected] L. -
Pre-Synaptic Cholinergic and Cannabinergic Signaling in the Expression of Organophosphate Toxicity
PRE-SYNAPTIC CHOLINERGIC AND CANNABINERGIC SIGNALING IN THE EXPRESSION OF ORGANOPHOSPHATE TOXICITY By PRAVEENA REDDY BAIREDDY Bachelor of Veterinary Science & Animal Husbandry Acharya N.G.Ranga Agricultural University Hyderabad, India. 2004 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY December, 2009 PRE-SYNAPTIC CHOLINERGIC AND CANNABINERGIC SIGNALING IN THE EXPRESSION OF ORGANOPHOSPHATE TOXICITY Dissertation Approved: Dr. Carey N Pope Dr.Guangping Chen Dr. Diane McFarlane Dr. David R Wallance Dr. A. Gordon Emslie Dean of the Graduate College ii ACKNOWLEDGEMENTS I take this opportunity to sincerely express deep sense of gratitude to my major advisor Dr. Carey Pope. His constant support during the course of study is highly appreciated. I thank him for the constant encouragement, and critical suggestions. His expertise in field of toxicology, his approach towards research had helped me a lot during difficult times of my study. His confidence in me made me to work hard and become competitive. I convey my deep sense of gratitude and indebtedness for providing technical help in times of need. His advice helped me not only in research but also helped me to build a strong personality for myself. I would like to convey my gratitude to Drs. David Wallace, Guanping Chen and Diane McFarlane for serving as members of my committee. Their suggestions have definitely improved the quality of my research. Their critique during the course of my research is greatly appreciated. I owe my deep sense of gratitude to Dr. Jing Pope for training me in valuable techniques which were important for successful completion of my project. -
Mythic Bio-Techne in Classical Antiquity: Desire, Hope, and Dread
Mayor, Mythic Bio-Techne, 1 Mythic Bio-Techne in Classical Antiquity: Desire, Hope, and Dread Adrienne Mayor Biotechnique Exhibit Catalog, Yerba Buena Center for the Arts, 2007 The apprehension and exuberance (rational or otherwise) evoked by obscuring the lines between the natural and unnatural, art and science, life and death, might seem to be new constellations of human emotions called into being by uniquely modern biotechnological advances. Concepts of replicating, amplifying, and creating life itself— and the ambivalence that surrounds such issues—have very ancient roots, and were explored in Greek mythology and art, thousands of years before the advent of modern science. Ancient narratives about artificial life, surpassing human limits, and controlling potentially dangerous biotechnologies feature familiar legendary figures: Hercules, Medea, Daedalus, Pandora. Classical stories describing what the ancient Greeks might have termed bio- techne (bios, life, crafted through the art of science, techne) eerily foreshadow the ways that contemporary feelings of optimism about modern biotechnology vie with a sense of dread. In classical antiquity, as in modernity, cultural dreams and nightmares about bio-techne Mayor, Mythic Bio-Techne, 2 inspired artistic endeavors. Artisans created hybrid mythological life- forms for public display. Bio-techne myths led playwrights like Euripides and Sophocles to produce haunting dramatic performances, and artists illustrated the stories in vase paintings and sculpture. These classical artifacts continue to have powerful impacts on modern audiences. The stories discussed in this essay help to place the seemingly modern idea of manipulating life within early mytho-historic traditions. The examples I’ve selected fall into four, often overlapping categories.