Role of the Ascigerous State in the Epidemiology Of
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Ricardo De Nardi Fonoff
1 Universidade de São Paulo Escola Superior de Agricultura “Luiz de Queiroz” Sclerotinia sclerotiorum: características morfológicas, agressividade, sensibilidade “in vitro” a fungicidas e resistência de isolados a tiofanato metílico Patrícia Fabretti Kreyci Tese apresentada para obtenção do título de Doutora em Ciências. Área de concentração: Fitopatologia Piracicaba 2016 2 Patricia Fabretti Kreyci Engenheira Agrônoma Sclerotinia sclerotiorum: características morfológicas, agressividade, sensibilidade “in vitro” a fungicidas e resistência de isolados a tiofanato metílico versão revisada de acordo com a resolução CoPGr 6018 de 2011 Orientador: Prof. Dr. JOSÉ OTAVIO MACHADO MENTEN Tese apresentada para obtenção do título de Doutora em Ciências. Área de concentração: Fitopatologia Piracicaba 2016 Dados Internacionais de Catalogação na Publicação DIVISÃO DE BIBLIOTECA - DIBD/ESALQ/USP Kreyci, Patrícia Fabretti Sclerotinia sclerotiorum: características morfológicas, agressividade, sensibilidade “in vitro” a fungicidas e resistência de isolados a tiofanato metílico / Patrícia Fabretti Kreyci. - - versão revisada de acordo com a resolução CoPGr 6018 de 2011. - - Piracicaba, 2016. 146 p. : il. Tese (Doutorado) - - Escola Superior de Agricultura “Luiz de Queiroz”. 1. Sclerotinia sclerotiorum 2. Mofo-branco 3. Caracterização morfológica 4. Sensibilidade a fungicidas 5. Resistência 6. Tiofanato metílico I. Título CDD 632.43 K92s “Permitida a cópia total ou parcial deste documento, desde que citada a fonte – O autor” 3 Aos meus pais José e Magali, Que me ensinaram o valor da luta, E a felicidade da conquista, OFEREÇO À minha irmã Ana Paula, Meu exemplo de superação E meu sobrinho Mario, Por todo amor e afeto, DEDICO 4 5 AGRADECIMENTOS À Escola Superior de Agricultura “Luiz de Queiroz” – Universidade de São Paulo, pela formação nos cursos de Graduação e Pós Graduação. -
Cloning and Analysis of the Mating-Type Idiomorphs from the Barley Pathogen Septoria Passerinii
Mol Gen Genomics (2003) 269: 1–12 DOI 10.1007/s00438-002-0795-x ORIGINAL PAPER S. B. Goodwin Æ C. Waalwijk Æ G. H. J. Kema J. R. Cavaletto Æ G. Zhang Cloning and analysis of the mating-type idiomorphs from the barley pathogen Septoria passerinii Received: 15 April 2002 / Accepted: 5 December 2002 / Published online: 11 March 2003 Ó Springer-Verlag 2003 Abstract The genus Septoria contains more than 1000 amplified polymorphic DNA markers revealed that each species of plant pathogenic fungi, most of which have no isolate had a unique genotype. The common occurrence known sexual stage. Species of Septoria without a known of both mating types on the same leaf and the high levels sexual stage could be recent derivatives of sexual species of genotypic diversity indicate that S. passerinii is almost that have lost the ability to mate. To test this hypothesis, certainly not an asexual derivative of a sexual fungus. the mating-type region of S. passerinii, a species with no Instead, sexual reproduction probably plays an integral known sexual stage, was cloned, sequenced, and com- role in the life cycle of S. passerinii and may be much pared to that of its close relative S. tritici (sexual stage: more important than previously believed in this (and Mycosphaerella graminicola). Both of the S. passerinii possibly other) ‘‘asexual’’ species of Septoria. mating-type idiomorphs were approximately 3 kb in size and contained a single reading frame interrupted by one Keywords Cochliobolus Æ Evolution Æ (MAT-2)ortwo(MAT-1) putative introns. The putative Loculoascomycetes Æ Multiplex PCR Æ Mycosphaerella products of MAT-1 and MAT-2 are characterized by graminicola alpha-box and high-mobility-group sequences, respec- tively, similar to those in the mating-type genes of M. -
Diplocarpon Rosae) Genetic Diversity in Eastern North America Using Amplified Fragment Length Polymorphism and Implications for Resistance Screening
J. AMER.SOC.HORT.SCI. 132(4):534–540. 2007. Distribution of Rose Black Spot (Diplocarpon rosae) Genetic Diversity in Eastern North America Using Amplified Fragment Length Polymorphism and Implications for Resistance Screening Vance M. Whitaker and Stan C. Hokanson1 Department of Horticultural Science, University of Minnesota, 258 Alderman Hall, 1970 Folwell Avenue, St. Paul, MN 55108 James Bradeen Department of Plant Pathology, University of Minnesota, 495 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 ADDITIONAL INDEX WORDS. AMOVA, dendrogram, fungal isolate, Jaccard’s coefficient, pathogenic race, principal component analysis ABSTRACT. Black spot, incited by the fungus Diplocarpon rosae Wolf, is the most significant disease problem of landscape roses (Rosa hybrida L.) worldwide. The documented presence of pathogenic races necessitates that rose breeders screen germplasm with isolates that represent the range of D. rosae diversity for their target region. The objectives of this study were to characterize the genetic diversity of single-spore isolates from eastern North America and to examine their distribution according to geographic origin, host of origin, and race. Fifty isolates of D. rosae were collected from roses representing multiple horticultural classes in disparate locations across eastern North America and analyzed by amplified fragment length polymorphism. Considerable marker diversity among isolates was discovered, although phenetic and cladistic analyses revealed no significant clustering according to host of origin or race. Some clustering within collection locations suggested short-distance dispersal through asexual conidia. Lack of clustering resulting from geographic origin was consistent with movement of D. rosae on vegetatively propagated roses. Results suggest that field screening for black spot resistance in multiple locations may not be necessary; however, controlled inoculations with single-spore isolates representing known races is desirable as a result of the inherent limitations of field screening. -
Identify New Resistant Genes for Eyespot Diseases of Wheat In
IDENTIFICATION AND MAPPING OF RESISTANCE GENES FOR EYESPOT OF WHEAT IN AEGILOPS LONGISSIMA By HONGYAN SHENG i A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy WASHINGTON STATE UNIVERSITY Department of Plant Pathology May 2011 © Copyright by HONGYAN SHENG, 2011 All Rights Reserved To the Faculty of Washington State University: The members of the Committee appointed to examine the dissertation of HONGYAN SHENG find it satisfactory and recommend that it be accepted. _________________________________________ Timothy D. Murray, Ph. D., Chair _________________________________________ Xianming Chen, Ph. D. _________________________________________ Scot H. Hulbert, Ph. D. _________________________________________ Tobin L. Peever, Ph. D. _________________________________________ Stephen S. Jones, Ph. D. ii ACKNOWLEDGMENT I would like to express my sincere gratitude and appreciation to my mentor and major advisor, Dr. Timothy D. Murray, for all his guidance, support, patience, and encouragement throughout my entire Ph. D. process at Washington State University. I am grateful to Dr. Murray for sharing his knowledge of plant pathology, providing insight into this dissertation, and leading me to the complex and fascinating world of genetics. My grateful appreciation goes to my committee members, Dr. Tobin L. Peever, Dr. Xianming Chen, Dr. Scot H. Hulbert, and Dr. Stephen S. Jones for their helpful advice and guidance during my graduate work and critical review of my dissertation. I would especially like to thank Dr. Deven R. See (USDA-ARS Regional Small Grains Genotyping Laboratory at Pullman, WA) for providing techniques and equipments for marker analysis work. Most of all, I am grateful for his critical suggestion leading to successful results. -
University of Catania
UNIVERSITY OF CATANIA DEPARTMENT OF AGROFOOD AND ENVIRONMENTAL MANAGEMENT SYSTEMS INTERNATIONAL PhD PLANT HEALTH TECHNOLOGIES AND PROTECTION OF AGROECOSYSTEMS CYCLE XXV 2010-2012 Detection of new Calonectria spp. and Calonectria Diseases and Changes in Fungicide Sensitivity in Calonectria scoparia Complex This thesis is presented for the degree of Doctor of Philosophy by VLADIMIRO GUARNACCIA COORDINATOR SUPERVISOR PROF. C. RAPISARDA PROF. G.POLIZZI CHAPTER 1 - The genus Calonectria and the fungicide resistance.......................... 1 1.1 Introduction............................................................................................................ 2 1.1.1 Calonectria...................................................................................................... 2 1.1.2 Importance of Calonectria.............................................................................. 3 1.1.3 Morphology..................................................................................................... 6 1.1.4 Pathogenicity................................................................................................... 9 1.1.5 Microsclerotia ................................................................................................. 9 1.1.6 Mating compatibility..................................................................................... 10 1.1.7 Phylogeny...................................................................................................... 12 1.1.7.1 Calonectria scoparia species complex ................................................. -
The 100 Years of the Fungus Collection Mucl 1894-1994
THE 100 YEARS OF THE FUNGUS COLLECTION MUCL 1894-1994 Fungal Taxonomy and Tropical Mycology: Quo vadis ? Taxonomy and Nomenclature of the Fungi Grégoire L. Hennebert Catholic University of Louvain, Belgium Notice of the editor This document is now published as an archive It is available on www.Mycotaxon.com It is also produced on CD and in few paperback copies G. L. Hennebert ed. Published by Mycotaxon, Ltd. Ithaca, New York, USA December 2010 ISBN 978-0-930845-18-6 (www pdf version) ISBN 978-0-930845-17-9 (paperback version) DOI 10.5248/2010MUCL.pdf 1894-1994 MUCL Centenary CONTENTS Lists of participants 8 Forword John Webser 13 PLENARY SESSION The 100 Year Fungus Culture Collection MUCL, June 29th, 1994 G.L. Hennebert, UCL Mycothèque de l'Université Catholique de Louvain (MUCL) 17 D. Hawksworth, IMI, U.K. Fungal genetic resource collections and biodiversity. 27 D. van der Mei, CBS, MINE, Netherlands The fungus culture collections in Europe. 34 J. De Brabandere, BCCM, Belgium The Belgian Coordinated Collections of Microorganisms. 40 Fungal Taxonomy and tropical Mycology G.L. Hennebert, UCL Introduction. Fungal taxonomy and tropical mycology: Quo vadis ? 41 C.P. Kurtzman, NRRL, USA Molecular taxonomy in the yeast fungi: present and future. 42 M. Blackwell, Louisiana State University, USA Phylogeny of filamentous fungi deduced from analysis of molecular characters: present and future. 52 J. Rammeloo, National Botanical Garden, Belgium Importance of morphological and anatomical characters in fungal taxonomy. 57 M.F. Roquebert, Natural History Museum, France Possible progress of modern morphological analysis in fungal taxonomy. 63 A.J. -
Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system. -
Rye Snow Mold-Associated Microdochium Nivale Strains Inhabiting a Common Area: Variability in Genetics, Morphotype, Extracellular Enzymatic Activities, and Virulence
Journal of Fungi Article Rye Snow Mold-Associated Microdochium nivale Strains Inhabiting a Common Area: Variability in Genetics, Morphotype, Extracellular Enzymatic Activities, and Virulence Vladimir Gorshkov 1,*, Elena Osipova 1, Mira Ponomareva 1, Sergey Ponomarev 1, Natalia Gogoleva 1, Olga Petrova 1, Olga Gogoleva 1, Azat Meshcherov 1, Alexander Balkin 1, Elena Vetchinkina 2, Kim Potapov 1, Yuri Gogolev 1 and Viktor Korzun 1,3 1 Laboratory of Plant Infectious Diseases, FRC Kazan Scientific Center of RAS, ul. Lobachevskogo, 2/31, 420111 Kazan, Russia; [email protected] (E.O.); [email protected] (M.P.); [email protected] (S.P.); [email protected] (N.G.); [email protected] (O.P.); [email protected] (O.G.); [email protected] (A.M.); [email protected] (A.B.); [email protected] (K.P.); [email protected] (Y.G.); [email protected] (V.K.) 2 Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences (IBPPM RAS), 13 Prospekt Entuziastov, 410049 Saratov, Russia; [email protected] 3 KWS SAAT SE & Co. KGaA, Grimsehlstr. 31, 37555 Einbeck, Germany * Correspondence: [email protected] or [email protected] Received: 13 November 2020; Accepted: 30 November 2020; Published: 3 December 2020 Abstract: Snow mold is a severe plant disease caused by psychrophilic or psychrotolerant fungi, of which Microdochium species are the most harmful. A clear understanding of Microdochium biology has many gaps; the pathocomplex and its dynamic are poorly characterized, virulence factors are unknown, genome sequences are not available, and the criteria of plant snow mold resistance are not elucidated. -
The Barley Scald Pathogen Rhynchosporium Secalis Is Closely Related to the Discomycetes Tapesia and Pyrenopeziza
Mycol. Res. 106 (6): 645–654 (June 2002). # The British Mycological Society 645 DOI: 10.1017\S0953756202006007 Printed in the United Kingdom. The barley scald pathogen Rhynchosporium secalis is closely related to the discomycetes Tapesia and Pyrenopeziza Stephen B. GOODWIN Crop Production and Pest Control Research Unit, USDA Agricultural Research Service, Department of Botany and Plant Pathology, 1155 Lilly Hall, Purdue University, West Lafayette, IN 47907-1155, USA. E-mail: sgoodwin!purdue.edu Received 3 July 2001; accepted 12 April 2002. Rhynchosporium secalis causes an economically important foliar disease of barley, rye, and other grasses known as leaf blotch or scald. This species has been difficult to classify due to a paucity of morphological features; the genus Rhynchosporium produces conidia from vegetative hyphae directly, without conidiophores or other structures. Furthermore, no teleomorph has been associated with R. secalis, so essentially nothing is known about its phylogenetic relationships. To identify other fungi that might be related to R. secalis, the 18S ribosomal RNA gene and the internal transcribed spacer (ITS) region (ITS1, 5n8S rRNA gene, and ITS2) were sequenced and compared to those in databases. Among 31 18S sequences downloaded from GenBank, the closest relatives to R. secalis were two species of Graphium (hyphomycetes) and two other accessions that were not identified to genus or species. Therefore, 18S sequences were not useful for elucidating the phylogenetic relationships of R. secalis. However, analyses of 76 ITS sequences revealed very close relationships among R. secalis and species of the discomycete genera Tapesia and Pyrenopeziza, as well as several anamorphic fungi including soybean and Adzuki-bean isolates of Phialophora gregata. -
Progress Report 2004 2005 31Mar06 Final.Indd
Progress Report 2004–2005 Edited by Pedro W. Crous Robert A. Samson and Richard C. Summerbell Centraalbureau voor Schimmelcultures Fungal Biodiversity Centre An Institute of the Royal Netherlands Academy of Arts and Sciences 1 Centraalbureau voor Schimmelcultures - Fungal Biodiversity Centre. Visiting and courier address: Uppsalalaan 8, 3584 CT Utrecht, The Netherlands. Postal address: P.O. Box 85167, 3508 AD Utrecht, The Netherlands. Telephone +31 (0)30 2122600. Telefax +31 (0)30 2512097. Email: [email protected] Homepage: http://www.cbs.knaw.nl 2 CONTENTS Preface 4 Structure and Research Programmes 7 The Collection 8 Research Programmes Evolutionary Phytopathology 13 Origins of Pathogenicity in Clinical Fungi 17 Yeast and Basidiomycete Research 20 Applied and Industrial Mycology 24 Programmes, Themes and Projects 28 Scientifi c Output (2004–2005) 33 Contract Research and Services 51 Finance and Staff 54 CBS Publications 2004–2005 56 Popular Scientifi c Activities 57 3 Preface The CBS Fungal Biodiversity Centre, also known as used to market mycology as a serious component the Centraalbureau voor Schimmelcultures, is one of biodiversity. of 17 institutes of the Royal Netherlands Academy of Arts and Sciences (RNAAS). The CBS is unique To Study Biodiversity: The CBS has chosen to in its scope and international significance, curating establish various online databases via its unique the world’s most diverse living collection of fungi. BioloMICS software. A good example of such a The collection, which grows at approximately 3000 database can be found by consulting MycoBank strains per year, includes organisms of crucial (www.MycoBank.org), where names of all new importance to diverse sectors of industry, as well as fungal taxa published in reputable journals will be to agriculture and medicine. -
Eyespot of Cereals Revisited: ITS Phylogeny Reveals New Species Relationships
European Journal of Plant Pathology 109: 841–850, 2003. © 2003 Kluwer Academic Publishers. Printed in the Netherlands. Eyespot of cereals revisited: ITS phylogeny reveals new species relationships Pedro W. Crous, J.Z. (Ewald) Groenewald and Walter Gams Centraalbureau Voor Schimmelcultures, Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands (Phone: +3130 2122643; Fax: +3130 2122601; E-mail: [email protected]) Accepted 1 April 2003 Key words: anamorph–teleomorph relationships, eyespot disease, Helgardia, Oculimacula, phylogeny, Ramulispora, systematics, Tapesia Abstract Four species so far classified in Pseudocercosporella or Ramulispora (hyphomycetes) are associated with eyespot disease symptoms of cereals. Two of these have been linked to teleomorphs that were described in Tapesia. Sequence data derived from the Internal Transcribed Spacer region (ITS1, 5.8S and ITS2) of the rDNA operon showed, however, that the eyespot fungi associated with Tapesia are not congeneric with Ramulispora sorghi, the type of Ramulispora. The genus name Tapesia is now rejected in favour of the conserved name Mollisia, which appears to comprise heterogeneous fungi. Tapesia yallundae is not closely related to the type of Mollisia, M. cinerea,but clusters separately, being more closely allied to species with Cadophora anamorphs. A new holomorph genus, Oculimacula, is therefore proposed for teleomorphs of the eyespot fungi, while the anamorphs are accommodated in Helgardia gen. nov. Introduction scars. He included C. herpotrichoides in this genus. Nirenberg (1981) found that the best-known Eyespot disease of cereals is widespread throughout eyespot fungus on wheat, Pseudocercosporella the temperate regions of the world, and causes a dam- herpotrichoides, includes two varieties, P. aging stem-base infection of these hosts (Fitt et al., herpotrichoides (Fron) Deighton var. -
Redefining Genera of Cereal Pathogens: <I
VOLUME 7 JUNE 2021 Fungal Systematics and Evolution PAGES 67–98 doi.org/10.3114/fuse.2021.07.04 Redefining genera of cereal pathogens: Oculimacula, Rhynchosporium and Spermospora P.W. Crous1,2,3*, U. Braun4, B.A. McDonald5, C.L. Lennox6, J. Edwards7,8, R.C. Mann7, A. Zaveri8, C.C. Linde9, P.S. Dyer10, J.Z. Groenewald1 1Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands 2Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands 3Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 4Martin-Luther-Universität, Institut für Biologie, Bereich Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, 06099 Halle (Saale), Germany 5ETH Zürich, Plant Pathology, Institute of Integrative Biology (IBZ), Universitätstrasse 2, LFW B16, 8092 Zürich, Switzerland 6Department of Plant Pathology, Stellenbosch University, Stellenbosch 7600, South Africa 7Agriculture Victoria Research, Department of Jobs, Precincts and Regions, AgriBio Centre, 5 Ring Road, LaTrobe University, Bundoora, Victoria 3083 Australia 8School of Applied Systems Biology, LaTrobe University, Bundoora, Victoria 3083 Australia 9Ecology and Evolution, Research School of Biology, College of Science, The Australian National University, 46 Sullivans Creek Road, Acton, ACT 2600, Australia 10School of Life Sciences, University of Nottingham, Life Sciences Building, University Park, Nottingham NG7 2RD, UK *Corresponding author: