Caspase-1 Initiates Apoptosis in the Absence of Gasdermin D
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Active Gasdermin D Forms Plasma Membrane Pores And
ACTIVE GASDERMIN D FORMS PLASMA MEMBRANE PORES AND DISRUPTS INTRACELLULAR COMPARTMENTS TO EXECUTE PYROPTOTIC DEATH IN MACROPHAGES DURING CANONICAL INFLAMMASOME ACTIVATION by HANA RUSSO Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Dissertation Advisor: George R. Dubyak, Ph.D. Department of Pathology Immunology Training Program CASE WESTERN RESERVE UNIVERSITY August, 2017 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of Hana Russo candidate for the degree of Doctor of Philosophy Alan Levine (Committee Chair) Clifford Harding Pamela Wearsch Carlos Subauste Clive Hamlin George Dubyak Date of Defense April 26, 2017 We also certify that written approval has been obtained for any proprietary material contained therein. Table of Contents List of Figures iv List of Tables vii List of Abbreviations viii Acknowledgements xii Abstract 1 Chapter 1: Introduction 1.1: Clinical relevance of pyroptosis 4 1.2: Pyroptosis requires inflammasome activation 4 1.2a: Non-canonical inflammasome complex 6 1.2b: Canonical inflammasome complexes 6 1.3: Role of pyroptosis in host defense and disease 13 1.4: N-terminal Gsdmd constitutes the pyroptotic pore 15 1.5: IL-1β biology and mechanism of release 19 1.6: Cell type specificity of pyroptosis 25 1.7: The gasdermin family 26 1.8: Apoptotic signaling during inflammasome activation in the absence of caspase-1 or Gsdmd 28 1.9: NLRP3 inflammasome-mediated organelle dysfunction 29 1.10: Objective of Dissertation Research -
Gasdermin D Promotes AIM2 Inflammasome Activation and Is Required for Host Protection Against Francisella Novicida
Gasdermin D Promotes AIM2 Inflammasome Activation and Is Required for Host Protection against Francisella novicida This information is current as Qifan Zhu, Min Zheng, Arjun Balakrishnan, Rajendra Karki of September 26, 2021. and Thirumala-Devi Kanneganti J Immunol published online 7 November 2018 http://www.jimmunol.org/content/early/2018/11/06/jimmun ol.1800788 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2018/11/06/jimmunol.180078 Material 8.DCSupplemental http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on September 26, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2018 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Published November 7, 2018, doi:10.4049/jimmunol.1800788 The Journal of Immunology Gasdermin D Promotes AIM2 Inflammasome Activation and Is Required for Host Protection against Francisella novicida Qifan Zhu,*,† Min Zheng,* Arjun Balakrishnan,* Rajendra Karki,* and Thirumala-Devi Kanneganti* The DNA sensor absent in melanoma 2 (AIM2) forms an inflammasome complex with ASC and caspase-1 in response to Francisella tularensis subspecies novicida infection, leading to maturation of IL-1b and IL-18 and pyroptosis. -
Post-Translational Regulation of Inflammasomes
OPEN Cellular & Molecular Immunology (2017) 14, 65–79 & 2017 CSI and USTC All rights reserved 2042-0226/17 www.nature.com/cmi REVIEW Post-translational regulation of inflammasomes Jie Yang1,2, Zhonghua Liu1 and Tsan Sam Xiao1 Inflammasomes play essential roles in immune protection against microbial infections. However, excessive inflammation is implicated in various human diseases, including autoinflammatory syndromes, diabetes, multiple sclerosis, cardiovascular disorders and neurodegenerative diseases. Therefore, precise regulation of inflammasome activities is critical for adequate immune protection while limiting collateral tissue damage. In this review, we focus on the emerging roles of post-translational modifications (PTMs) that regulate activation of the NLRP3, NLRP1, NLRC4, AIM2 and IFI16 inflammasomes. We anticipate that these types of PTMs will be identified in other types of and less well-characterized inflammasomes. Because these highly diverse and versatile PTMs shape distinct inflammatory responses in response to infections and tissue damage, targeting the enzymes involved in these PTMs will undoubtedly offer opportunities for precise modulation of inflammasome activities under various pathophysiological conditions. Cellular & Molecular Immunology (2017) 14, 65–79; doi:10.1038/cmi.2016.29; published online 27 June 2016 Keywords: inflammasome; phosphorylation; post-translational modifications; ubiquitination INTRODUCTION upstream sensor molecules through its PYD domain and The innate immune system relies on pattern recognition downstream -
Genetic Variant in 3' Untranslated Region of the Mouse Pycard Gene
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.26.437184; this version posted March 26, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 2 3 Title: 4 Genetic Variant in 3’ Untranslated Region of the Mouse Pycard Gene Regulates Inflammasome 5 Activity 6 Running Title: 7 3’UTR SNP in Pycard regulates inflammasome activity 8 Authors: 9 Brian Ritchey1*, Qimin Hai1*, Juying Han1, John Barnard2, Jonathan D. Smith1,3 10 1Department of Cardiovascular & Metabolic Sciences, Lerner Research Institute, Cleveland Clinic, 11 Cleveland, OH 44195 12 2Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 13 44195 14 3Department of Molecular Medicine, Cleveland Clinic Lerner College of Medicine of Case Western 15 Reserve University, Cleveland, OH 44195 16 *, These authors contributed equally to this study. 17 Address correspondence to Jonathan D. Smith: email [email protected]; ORCID ID 0000-0002-0415-386X; 18 mailing address: Cleveland Clinic, Box NC-10, 9500 Euclid Avenue, Cleveland, OH 44195, USA. 19 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.26.437184; this version posted March 26, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 20 Abstract 21 Quantitative trait locus mapping for interleukin-1 release after inflammasome priming and activation 22 was performed on bone marrow-derived macrophages (BMDM) from an AKRxDBA/2 strain intercross. -
RIPK1 Activates Distinct Gasdermins in Macrophages and Neutrophils Upon Pathogen Blockade of Innate Immune Signalling
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.20.427379; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. RIPK1 activates distinct gasdermins in macrophages and neutrophils upon pathogen blockade of innate immune signalling Kaiwen W. Chen1,2,#, Benjamin Demarco1, Rosalie Heilig1, Saray P Ramos1, James P Grayczyk3, Charles-Antoine Assenmacher3, Enrico Radaelli3, Leonel D. Joannas4,5, Jorge Henao-Mejia4,5,6, Igor E Brodsky3,5, Petr Broz1# 1Department of Biochemistry, University of Lausanne, CH-1066 Epalinges, Switzerland 2Immunology Programme and Department of Microbiology & Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 3Department of Pathobiology, University of Pennsylvania School of Veterinary Medicine, Philadelphia, PA, USA 4Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. 5Institue for Immunology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA 6Division of Protective Immunity, Department of Pathology and Laboratory Medicine, Children’s Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA 19104, USA. #Correspondence to: [email protected] or [email protected] Keywords: gasdermin, RIPK1, Yersinia, caspase-8, IL-1 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.01.20.427379; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
ATP-Binding and Hydrolysis in Inflammasome Activation
molecules Review ATP-Binding and Hydrolysis in Inflammasome Activation Christina F. Sandall, Bjoern K. Ziehr and Justin A. MacDonald * Department of Biochemistry & Molecular Biology, Cumming School of Medicine, University of Calgary, 3280 Hospital Drive NW, Calgary, AB T2N 4Z6, Canada; [email protected] (C.F.S.); [email protected] (B.K.Z.) * Correspondence: [email protected]; Tel.: +1-403-210-8433 Academic Editor: Massimo Bertinaria Received: 15 September 2020; Accepted: 3 October 2020; Published: 7 October 2020 Abstract: The prototypical model for NOD-like receptor (NLR) inflammasome assembly includes nucleotide-dependent activation of the NLR downstream of pathogen- or danger-associated molecular pattern (PAMP or DAMP) recognition, followed by nucleation of hetero-oligomeric platforms that lie upstream of inflammatory responses associated with innate immunity. As members of the STAND ATPases, the NLRs are generally thought to share a similar model of ATP-dependent activation and effect. However, recent observations have challenged this paradigm to reveal novel and complex biochemical processes to discern NLRs from other STAND proteins. In this review, we highlight past findings that identify the regulatory importance of conserved ATP-binding and hydrolysis motifs within the nucleotide-binding NACHT domain of NLRs and explore recent breakthroughs that generate connections between NLR protein structure and function. Indeed, newly deposited NLR structures for NLRC4 and NLRP3 have provided unique perspectives on the ATP-dependency of inflammasome activation. Novel molecular dynamic simulations of NLRP3 examined the active site of ADP- and ATP-bound models. The findings support distinctions in nucleotide-binding domain topology with occupancy of ATP or ADP that are in turn disseminated on to the global protein structure. -
Gasdermin D: the Long-Awaited Executioner of Pyroptosis Cell Research (2015) 25:1183-1184
Cell Research (2015) 25:1183-1184. npg © 2015 IBCB, SIBS, CAS All rights reserved 1001-0602/15 $ 32.00 RESEARCH HIGHLIGHT www.nature.com/cr Gasdermin D: the long-awaited executioner of pyroptosis Cell Research (2015) 25:1183-1184. doi:10.1038/cr.2015.124; published online 20 October 2015 Inflammatory caspases drive a screen for mutations that would impair cell membrane that mediates release of lytic form of cell death called pyropto- activation of the caspase-11-dependent matured IL-1β from the cell. sis in response to microbial infection pathway. Through this screen, the au- To further dissect how gasdermin and endogenous damage-associated thors found that peritoneal macrophages D might contribute to the caspase- signals. Two studies now demonstrate harvested from a mouse strain harboring 11-dependent pathway, both groups that cleavage of the substrate gas- a mutation in the gene encoding gasder- performed a series of biochemical as- dermin D by inflammatory caspases min D, called GsdmdI105N/I105N (owing to says to demonstrate that recombinant necessitates eventual pyroptotic de- an isoleucine-to-asparagine substitu- caspase-11 cleaved gasdermin D be- mise of a cell. tion mutation at position 105), did not tween the Asp276 and Gly277 residues Inflammatory caspases, including undergo pyroptosis and release IL-1β of mouse gasdermin D, generating an N- caspase-1, -4, -5 and -11, are crucial in response to LPS transfection. On the terminal (30-31-kDa) and a C-terminal mediators of inflammation and cell other hand, Shao and colleagues utilized fragment (22-kDa). Caspase-4 or -5 also death. -
A Role for the Nlr Family Members Nlrc4 and Nlrp3 in Astrocytic Inflammasome Activation and Astrogliosis
A ROLE FOR THE NLR FAMILY MEMBERS NLRC4 AND NLRP3 IN ASTROCYTIC INFLAMMASOME ACTIVATION AND ASTROGLIOSIS Leslie C. Freeman A dissertation submitted to the faculty of the University of North Carolina at Chapel Hill in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Curriculum of Genetics and Molecular Biology. Chapel Hill 2016 Approved by: Jenny P. Y. Ting Glenn K. Matsushima Beverly H. Koller Silva S. Markovic-Plese Pauline. Kay Lund ©2016 Leslie C. Freeman ALL RIGHTS RESERVED ii ABSTRACT Leslie C. Freeman: A Role for the NLR Family Members NLRC4 and NLRP3 in Astrocytic Inflammasome Activation and Astrogliosis (Under the direction of Jenny P.Y. Ting) The inflammasome is implicated in many inflammatory diseases but has been primarily studied in the macrophage-myeloid lineage. Here we demonstrate a physiologic role for nucleotide-binding domain, leucine-rich repeat, CARD domain containing 4 (NLRC4) in brain astrocytes. NLRC4 has been primarily studied in the context of gram-negative bacteria, where it is required for the maturation of pro-caspase-1 to active caspase-1. We show the heightened expression of NLRC4 protein in astrocytes in a cuprizone model of neuroinflammation and demyelination as well as human multiple sclerotic brains. Similar to macrophages, NLRC4 in astrocytes is required for inflammasome activation by its known agonist, flagellin. However, NLRC4 in astrocytes also mediate inflammasome activation in response to lysophosphatidylcholine (LPC), an inflammatory molecule associated with neurologic disorders. In addition to NLRC4, astrocytic NLRP3 is required for inflammasome activation by LPC. Two biochemical assays show the interaction of NLRC4 with NLRP3, suggesting the possibility of a NLRC4-NLRP3 co-inflammasome. -
1 INVITED REVIEW Mechanisms of Gasdermin Family Members in Inflammasome Signaling and Cell Death Shouya Feng,* Daniel Fox,* Si M
INVITED REVIEW Mechanisms of Gasdermin family members in inflammasome signaling and cell death Shouya Feng,* Daniel Fox,* Si Ming Man Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, Australia. * S.F. and D.F. equally contributed to this work Correspondence to Si Ming Man: Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, 2601, Australia. [email protected] 1 Abstract The Gasdermin (GSDM) family consists of Gasdermin A (GSDMA), Gasdermin B (GSDMB), Gasdermin C (GSDMC), Gasdermin D (GSDMD), Gasdermin E (GSDME) and Pejvakin (PJVK). GSDMD is activated by inflammasome-associated inflammatory caspases. Cleavage of GSDMD by human or mouse caspase-1, human caspase-4, human caspase-5, and mouse caspase-11, liberates the N-terminal effector domain from the C-terminal inhibitory domain. The N-terminal domain oligomerizes in the cell membrane and forms a pore of 10-16 nm in diameter, through which substrates of a smaller diameter, such as interleukin (IL)-1β and IL- 18, are secreted. The increasing abundance of membrane pores ultimately leads to membrane rupture and pyroptosis, releasing the entire cellular content. Other than GSDMD, the N-terminal domain of all GSDMs, with the exception of PJVK, have the ability to form pores. There is evidence to suggest that GSDMB and GSDME are cleaved by apoptotic caspases. Here, we review the mechanistic functions of GSDM proteins with respect to their expression and signaling profile in the cell, with more focused discussions on inflammasome activation and cell death. -
Inflammasome Adaptor ASC Suppresses Apoptosis of Gastric Cancer Cells by an IL-18 Mediated Inflammation-Independent Mechanism
Author Manuscript Published OnlineFirst on December 27, 2017; DOI: 10.1158/0008-5472.CAN-17-1887 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Inflammasome adaptor ASC suppresses apoptosis of gastric cancer cells by an IL-18 mediated inflammation-independent mechanism Virginie Deswaerte1,2,*, Paul Nguyen3,4,*, Alison West1,2, Alison F. Browning1,2, Liang Yu1,2, Saleela M. Ruwanpura1,2, Jesse Balic1,2, Thaleia Livis1,2, Charlotte Girard5, Adele Preaudet3,4, Hiroko Oshima6, Ka Yee Fung3,4, Hazel Tye1,2, Meri Najdovska1,2, Matthias Ernst7, Masanobu Oshima6, Cem Gabay5, Tracy Putoczki3,4, and Brendan J. Jenkins1,2 1Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia; 2Department of Molecular Translational Science, School of Clinical Sciences, Monash University, Clayton, Victoria, Australia; 3Inflammation Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia; 4Department of Medical Biology, University of Melbourne, Parkville, Victoria, Australia; 5Division of Rheumatology, University Hospital of Geneva, and Department of Pathology and Immunology, University of Geneva School of Medicine, Geneva, Switzerland; 6Division of Genetics, Cancer Research Institute, Kanazawa University, Kanazawa, Japan; 7Olivia Newton-John Cancer Research Institute, La Trobe University School of Cancer Medicine, Heidelberg, Victoria, Australia. *These authors contributed equally. Running title: ASC inflammasomes promote gastric cancer via IL-18 Keywords: apoptosis, ASC, gastric cancer, IL-18, inflammasomes. 1 Downloaded from cancerres.aacrjournals.org on September 25, 2021. © 2017 American Association for Cancer Research. Author Manuscript Published OnlineFirst on December 27, 2017; DOI: 10.1158/0008-5472.CAN-17-1887 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. -
E3 Ubiquitin Ligase SYVN1 Is a Key Positive Regulator for GSDMD
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.21.453219; this version posted July 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 E3 ubiquitin ligase SYVN1 is a key positive regulator for 2 GSDMD-mediated pyroptosis 3 4 Yuhua Shi 1,2,#, Yang Yang3,#, Weilv Xu1,#, Wei Xu1, Xinyu Fu1, Qian Lv1, Jie Xia1, 5 Fushan Shi1,2,* 6 1 Department of Veterinary Medicine, College of Animal Sciences, Zhejiang 7 University, Hangzhou 310058, Zhejiang, PR China 8 2 Zhejiang Provincial Key Laboratory of Preventive Veterinary Medicine, Zhejiang 9 University, Hangzhou 310058, Zhejiang, PR China 10 3 Key Laboratory of Applied Technology on Green-Eco-Healthy Animal Husbandry of 11 Zhejiang Province, Zhejiang Provincial Engineering Laboratory for Animal Health 12 Inspection & Internet Technology, College of Animal Science and Technology & 13 College of Veterinary Medicine of Zhejiang A&F University, Hangzhou 311300, 14 Zhejiang, China 15 # These authors contributed equally to this work 16 *Corresponding author: Fushan Shi, E-mail: [email protected], Tel: 17 +086-0571-88982275 18 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.07.21.453219; this version posted July 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 19 Abstract 20 Gasdermin D (GSDMD) participates in activation of inflammasomes and pyroptosis. 21 Meanwhile, ubiquitination strictly regulates inflammatory responses. However, how 22 ubiquitination regulates Gasdermin D activity is not well understood. -
Cutting Edge: Critical Role for PYCARD/ASC in the Development of Experimental Autoimmune Encephalomyelitis This Information Is Current As of September 26, 2021
Cutting Edge: Critical Role for PYCARD/ASC in the Development of Experimental Autoimmune Encephalomyelitis This information is current as of September 26, 2021. Patrick J. Shaw, John R. Lukens, Samir Burns, Hongbo Chi, Maureen A. McGargill and Thirumala-Devi Kanneganti J Immunol 2010; 184:4610-4614; Prepublished online 5 April 2010; doi: 10.4049/jimmunol.1000217 Downloaded from http://www.jimmunol.org/content/184/9/4610 Supplementary http://www.jimmunol.org/content/suppl/2010/04/06/jimmunol.100021 http://www.jimmunol.org/ Material 7.DC1 References This article cites 20 articles, 3 of which you can access for free at: http://www.jimmunol.org/content/184/9/4610.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 26, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2010 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Cutting Edge: Critical Role for PYCARD/ASC in the Development of Experimental Autoimmune Encephalomyelitis Patrick J. Shaw, John R.