Pejvakin, a Candidate Stereociliary Rootlet Protein, Regulates Hair Cell Function in a Cell-Autonomous Manner
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Active Gasdermin D Forms Plasma Membrane Pores And
ACTIVE GASDERMIN D FORMS PLASMA MEMBRANE PORES AND DISRUPTS INTRACELLULAR COMPARTMENTS TO EXECUTE PYROPTOTIC DEATH IN MACROPHAGES DURING CANONICAL INFLAMMASOME ACTIVATION by HANA RUSSO Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Dissertation Advisor: George R. Dubyak, Ph.D. Department of Pathology Immunology Training Program CASE WESTERN RESERVE UNIVERSITY August, 2017 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of Hana Russo candidate for the degree of Doctor of Philosophy Alan Levine (Committee Chair) Clifford Harding Pamela Wearsch Carlos Subauste Clive Hamlin George Dubyak Date of Defense April 26, 2017 We also certify that written approval has been obtained for any proprietary material contained therein. Table of Contents List of Figures iv List of Tables vii List of Abbreviations viii Acknowledgements xii Abstract 1 Chapter 1: Introduction 1.1: Clinical relevance of pyroptosis 4 1.2: Pyroptosis requires inflammasome activation 4 1.2a: Non-canonical inflammasome complex 6 1.2b: Canonical inflammasome complexes 6 1.3: Role of pyroptosis in host defense and disease 13 1.4: N-terminal Gsdmd constitutes the pyroptotic pore 15 1.5: IL-1β biology and mechanism of release 19 1.6: Cell type specificity of pyroptosis 25 1.7: The gasdermin family 26 1.8: Apoptotic signaling during inflammasome activation in the absence of caspase-1 or Gsdmd 28 1.9: NLRP3 inflammasome-mediated organelle dysfunction 29 1.10: Objective of Dissertation Research -
Hearing Loss Epidemic the Hair Cell
Hearing loss epidemic One in ten (30 million) Americans has hearing loss FUTURE THERAPIES FOR INNER - Causes include heredity, aging, noise exposure, disease EAR REGENERATION - Number is expected to double by 2030 Hearing loss is the #1 birth defect in America Albert Edge - 1 in 1000 newborns is born profoundly deaf Harvard Medical School - 2-3/1000 will have partial/progressive hearing loss Massachusetts Eye and Ear Infirmary Hearing loss prevalence increases with age - 1 in 3 over 65 years has significant hearing loss - Among seniors, hearing loss is the 3rd most prevalent condition 2 The inner ear The hair cell Auditory Hair Bundle Nerve Middle Ear Sensory hairs vibrate, "tip-links"open ion channels into hair cell Ions flow into hair cell, Inner Ear changing its electrical potential Hair External Ear Cells 3 4 1 The nerve fiber Sensorineural hearing loss: Hair cells and nerve fibers Cochlear Implant can directly stimulate Electric potential causes chemical neurotransmitter release from synapse Sensory Cell Loss NeurotransmitterNeurotransmitter diffuses to nerve fiber and excites electrical activity in the form of action potentials Hair Cell Nerve Fiber Loss 5 6 Regeneration of hair cells in chick inner ear Can stem cell-derived inner ear progenitors replace lost hair cells in vivo (and restore hearing)? Normal Hair Cells Damaged Hair Cells Regenerated Hair Cell Bundles Li et al., TMM (2004) 2 Approaches to regenerating inner ear cells Gene therapy I. Generation of inner ear cells by gene therapy • New hair cells: transfer Atoh1 gene II. -
Gasdermin D Promotes AIM2 Inflammasome Activation and Is Required for Host Protection Against Francisella Novicida
Gasdermin D Promotes AIM2 Inflammasome Activation and Is Required for Host Protection against Francisella novicida This information is current as Qifan Zhu, Min Zheng, Arjun Balakrishnan, Rajendra Karki of September 26, 2021. and Thirumala-Devi Kanneganti J Immunol published online 7 November 2018 http://www.jimmunol.org/content/early/2018/11/06/jimmun ol.1800788 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2018/11/06/jimmunol.180078 Material 8.DCSupplemental http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on September 26, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2018 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Published November 7, 2018, doi:10.4049/jimmunol.1800788 The Journal of Immunology Gasdermin D Promotes AIM2 Inflammasome Activation and Is Required for Host Protection against Francisella novicida Qifan Zhu,*,† Min Zheng,* Arjun Balakrishnan,* Rajendra Karki,* and Thirumala-Devi Kanneganti* The DNA sensor absent in melanoma 2 (AIM2) forms an inflammasome complex with ASC and caspase-1 in response to Francisella tularensis subspecies novicida infection, leading to maturation of IL-1b and IL-18 and pyroptosis. -
RIPK1 Activates Distinct Gasdermins in Macrophages and Neutrophils Upon Pathogen Blockade of Innate Immune Signalling
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.20.427379; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. RIPK1 activates distinct gasdermins in macrophages and neutrophils upon pathogen blockade of innate immune signalling Kaiwen W. Chen1,2,#, Benjamin Demarco1, Rosalie Heilig1, Saray P Ramos1, James P Grayczyk3, Charles-Antoine Assenmacher3, Enrico Radaelli3, Leonel D. Joannas4,5, Jorge Henao-Mejia4,5,6, Igor E Brodsky3,5, Petr Broz1# 1Department of Biochemistry, University of Lausanne, CH-1066 Epalinges, Switzerland 2Immunology Programme and Department of Microbiology & Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 3Department of Pathobiology, University of Pennsylvania School of Veterinary Medicine, Philadelphia, PA, USA 4Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. 5Institue for Immunology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA 6Division of Protective Immunity, Department of Pathology and Laboratory Medicine, Children’s Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA 19104, USA. #Correspondence to: [email protected] or [email protected] Keywords: gasdermin, RIPK1, Yersinia, caspase-8, IL-1 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.01.20.427379; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
ATP-Binding and Hydrolysis in Inflammasome Activation
molecules Review ATP-Binding and Hydrolysis in Inflammasome Activation Christina F. Sandall, Bjoern K. Ziehr and Justin A. MacDonald * Department of Biochemistry & Molecular Biology, Cumming School of Medicine, University of Calgary, 3280 Hospital Drive NW, Calgary, AB T2N 4Z6, Canada; [email protected] (C.F.S.); [email protected] (B.K.Z.) * Correspondence: [email protected]; Tel.: +1-403-210-8433 Academic Editor: Massimo Bertinaria Received: 15 September 2020; Accepted: 3 October 2020; Published: 7 October 2020 Abstract: The prototypical model for NOD-like receptor (NLR) inflammasome assembly includes nucleotide-dependent activation of the NLR downstream of pathogen- or danger-associated molecular pattern (PAMP or DAMP) recognition, followed by nucleation of hetero-oligomeric platforms that lie upstream of inflammatory responses associated with innate immunity. As members of the STAND ATPases, the NLRs are generally thought to share a similar model of ATP-dependent activation and effect. However, recent observations have challenged this paradigm to reveal novel and complex biochemical processes to discern NLRs from other STAND proteins. In this review, we highlight past findings that identify the regulatory importance of conserved ATP-binding and hydrolysis motifs within the nucleotide-binding NACHT domain of NLRs and explore recent breakthroughs that generate connections between NLR protein structure and function. Indeed, newly deposited NLR structures for NLRC4 and NLRP3 have provided unique perspectives on the ATP-dependency of inflammasome activation. Novel molecular dynamic simulations of NLRP3 examined the active site of ADP- and ATP-bound models. The findings support distinctions in nucleotide-binding domain topology with occupancy of ATP or ADP that are in turn disseminated on to the global protein structure. -
Cells of Adult Brain Germinal Zone Have Properties Akin to Hair Cells and Can Be Used to Replace Inner Ear Sensory Cells After Damage
Cells of adult brain germinal zone have properties akin to hair cells and can be used to replace inner ear sensory cells after damage Dongguang Weia,1, Snezana Levica, Liping Niea, Wei-qiang Gaob, Christine Petitc, Edward G. Jonesa, and Ebenezer N. Yamoaha,1 aDepartment of Anesthesiology and Pain Medicine, Center for Neuroscience, Program in Communication and Sensory Science, University of California, 1544 Newton Court, Davis, CA 95618; bDepartment of Molecular Biology, Genentech, Inc., South San Francisco, CA 94080; and cUnite´deGe´ne´ tique et Physiologie de l’Audition, Unite´Mixte de Recherche S587, Institut National de la Sante´et de la Recherche Me´dicale-Universite´Paris VI, Colle`ge de France, Institut Pasteur, 25 Rue du Dr Roux, 75724 Paris, Cedex 15, France Edited by David Julius, University of California, San Francisco, CA, and approved October 27, 2008 (received for review August 15, 2008) Auditory hair cell defect is a major cause of hearing impairment, often and have an actin-filled process as in the HCs. Thus, we surmise that leading to spiral ganglia neuron (SGN) degeneration. The cell loss that cells of the adult forebrain germinal zone might be potential follows is irreversible in mammals, because inner ear hair cells (HCs) candidate cells to be used autologously for the replacement of have a limited capacity to regenerate. Here, we report that in the nonrenewable HCs and SGNs. adult brain of both rodents and humans, the ependymal layer of the Ependymal cells adjacent to the spinal canal proliferate exten- lateral ventricle contains cells with proliferative potential, which sively upon spinal cord injuries (16, 17). -
Smelling Better with Chloride COMMENTARY Stephan Fringsa,1
COMMENTARY Smelling better with chloride COMMENTARY Stephan Fringsa,1 The sense of smell and its astonishing performance coding is the solution to the problem of low-selectivity pose biologists with ever new riddles. How can the receptors (2). system smell almost anything that gets into the nose, However, the necessity to operate OSNs with fuzzy distinguish it from countless other odors, memorize odorant receptors creates another problem, as it limits it forever, and trigger reliably adequate behavior? the efficacy of the transduction process. OSNs trans- Among the senses, the olfactory system always duce chemical signals through a metabotropic path- seems to do things differently. The olfactory sensory way (Fig. 1A). Such pathways translate external stimuli neurons (OSNs) in the nose were suggested to use an into cellular responses by G-protein–coupled recep- unusual way of signal amplification to help them in tors. Their efficacy depends on the duration of recep- responding to weak stimuli. This chloride-based tor activity: the longer the receptor is switched on, the mechanism is somewhat enigmatic and controversial. more G protein can be activated. This is well studied in A team of sensory physiologists from The Johns photoreceptors, where the rhodopsin molecule may Hopkins University School of Medicine has now de- stay active for more than a second after absorbing a veloped a method to study this process in detail. photon. Within this time, it can activate hundreds of G Li et al. (1) demonstrate how OSNs amplify their proteins, one after the other, thus eliciting a robust electrical response to odor stimulation using chlo- cellular response to a single photon. -
Gasdermin D: the Long-Awaited Executioner of Pyroptosis Cell Research (2015) 25:1183-1184
Cell Research (2015) 25:1183-1184. npg © 2015 IBCB, SIBS, CAS All rights reserved 1001-0602/15 $ 32.00 RESEARCH HIGHLIGHT www.nature.com/cr Gasdermin D: the long-awaited executioner of pyroptosis Cell Research (2015) 25:1183-1184. doi:10.1038/cr.2015.124; published online 20 October 2015 Inflammatory caspases drive a screen for mutations that would impair cell membrane that mediates release of lytic form of cell death called pyropto- activation of the caspase-11-dependent matured IL-1β from the cell. sis in response to microbial infection pathway. Through this screen, the au- To further dissect how gasdermin and endogenous damage-associated thors found that peritoneal macrophages D might contribute to the caspase- signals. Two studies now demonstrate harvested from a mouse strain harboring 11-dependent pathway, both groups that cleavage of the substrate gas- a mutation in the gene encoding gasder- performed a series of biochemical as- dermin D by inflammatory caspases min D, called GsdmdI105N/I105N (owing to says to demonstrate that recombinant necessitates eventual pyroptotic de- an isoleucine-to-asparagine substitu- caspase-11 cleaved gasdermin D be- mise of a cell. tion mutation at position 105), did not tween the Asp276 and Gly277 residues Inflammatory caspases, including undergo pyroptosis and release IL-1β of mouse gasdermin D, generating an N- caspase-1, -4, -5 and -11, are crucial in response to LPS transfection. On the terminal (30-31-kDa) and a C-terminal mediators of inflammation and cell other hand, Shao and colleagues utilized fragment (22-kDa). Caspase-4 or -5 also death. -
Review of Hair Cell Synapse Defects in Sensorineural Hearing Impairment
Otology & Neurotology 34:995Y1004 Ó 2013, Otology & Neurotology, Inc. Review of Hair Cell Synapse Defects in Sensorineural Hearing Impairment *†‡Tobias Moser, *Friederike Predoehl, and §Arnold Starr *InnerEarLab, Department of Otolaryngology, University of Go¨ttingen Medical School; ÞSensory Research Center SFB 889, þBernstein Center for Computational Neuroscience, University of Go¨ttingen, Go¨ttingen, Germany; and §Department of Neurology, University of California, Irvine, California, U.S.A. Objective: To review new insights into the pathophysiology of are similar to those accompanying auditory neuropathy, a group sensorineural hearing impairment. Specifically, we address defects of genetic and acquired disorders of spiral ganglion neurons. of the ribbon synapses between inner hair cells and spiral ganglion Genetic auditory synaptopathies include alterations of glutamate neurons that cause auditory synaptopathy. loading of synaptic vesicles, synaptic Ca2+ influx or synaptic Data Sources and Study Selection: Here, we review original vesicle turnover. Acquired synaptopathies include noise-induced publications on the genetics, animal models, and molecular hearing loss because of excitotoxic synaptic damage and subse- mechanisms of hair cell ribbon synapses and their dysfunction. quent gradual neural degeneration. Alterations of ribbon synapses Conclusion: Hair cell ribbon synapses are highly specialized to likely also contribute to age-related hearing loss. Key Words: enable indefatigable sound encoding with utmost temporal precision. GeneticsVIon -
1 INVITED REVIEW Mechanisms of Gasdermin Family Members in Inflammasome Signaling and Cell Death Shouya Feng,* Daniel Fox,* Si M
INVITED REVIEW Mechanisms of Gasdermin family members in inflammasome signaling and cell death Shouya Feng,* Daniel Fox,* Si Ming Man Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, Australia. * S.F. and D.F. equally contributed to this work Correspondence to Si Ming Man: Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, 2601, Australia. [email protected] 1 Abstract The Gasdermin (GSDM) family consists of Gasdermin A (GSDMA), Gasdermin B (GSDMB), Gasdermin C (GSDMC), Gasdermin D (GSDMD), Gasdermin E (GSDME) and Pejvakin (PJVK). GSDMD is activated by inflammasome-associated inflammatory caspases. Cleavage of GSDMD by human or mouse caspase-1, human caspase-4, human caspase-5, and mouse caspase-11, liberates the N-terminal effector domain from the C-terminal inhibitory domain. The N-terminal domain oligomerizes in the cell membrane and forms a pore of 10-16 nm in diameter, through which substrates of a smaller diameter, such as interleukin (IL)-1β and IL- 18, are secreted. The increasing abundance of membrane pores ultimately leads to membrane rupture and pyroptosis, releasing the entire cellular content. Other than GSDMD, the N-terminal domain of all GSDMs, with the exception of PJVK, have the ability to form pores. There is evidence to suggest that GSDMB and GSDME are cleaved by apoptotic caspases. Here, we review the mechanistic functions of GSDM proteins with respect to their expression and signaling profile in the cell, with more focused discussions on inflammasome activation and cell death. -
Purinergic Signaling in Cochlear Supporting Cells Reduces Hair
RESEARCH ARTICLE Purinergic signaling in cochlear supporting cells reduces hair cell excitability by increasing the extracellular space Travis A Babola1, Calvin J Kersbergen1, Han Chin Wang1†, Dwight E Bergles1,2,3* 1The Solomon Snyder Department of Neuroscience, Johns Hopkins University, Baltimore, United States; 2Department of Otolaryngology Head and Neck Surgery, Johns Hopkins University, Baltimore, United States; 3Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, United States Abstract Neurons in developing sensory pathways exhibit spontaneous bursts of electrical activity that are critical for survival, maturation and circuit refinement. In the auditory system, intrinsically generated activity arises within the cochlea, but the molecular mechanisms that initiate this activity remain poorly understood. We show that burst firing of mouse inner hair cells prior to hearing onset requires P2RY1 autoreceptors expressed by inner supporting cells. P2RY1 activation triggers K+ efflux and depolarization of hair cells, as well as osmotic shrinkage of supporting cells that dramatically increased the extracellular space and speed of K+ redistribution. Pharmacological inhibition or genetic disruption of P2RY1 suppressed neuronal burst firing by reducing K+ release, but unexpectedly enhanced their tonic firing, as water resorption by supporting cells reduced the extracellular space, leading to K+ accumulation. These studies indicate that purinergic signaling in *For correspondence: supporting cells regulates hair cell -
Nomina Histologica Veterinaria, First Edition
NOMINA HISTOLOGICA VETERINARIA Submitted by the International Committee on Veterinary Histological Nomenclature (ICVHN) to the World Association of Veterinary Anatomists Published on the website of the World Association of Veterinary Anatomists www.wava-amav.org 2017 CONTENTS Introduction i Principles of term construction in N.H.V. iii Cytologia – Cytology 1 Textus epithelialis – Epithelial tissue 10 Textus connectivus – Connective tissue 13 Sanguis et Lympha – Blood and Lymph 17 Textus muscularis – Muscle tissue 19 Textus nervosus – Nerve tissue 20 Splanchnologia – Viscera 23 Systema digestorium – Digestive system 24 Systema respiratorium – Respiratory system 32 Systema urinarium – Urinary system 35 Organa genitalia masculina – Male genital system 38 Organa genitalia feminina – Female genital system 42 Systema endocrinum – Endocrine system 45 Systema cardiovasculare et lymphaticum [Angiologia] – Cardiovascular and lymphatic system 47 Systema nervosum – Nervous system 52 Receptores sensorii et Organa sensuum – Sensory receptors and Sense organs 58 Integumentum – Integument 64 INTRODUCTION The preparations leading to the publication of the present first edition of the Nomina Histologica Veterinaria has a long history spanning more than 50 years. Under the auspices of the World Association of Veterinary Anatomists (W.A.V.A.), the International Committee on Veterinary Anatomical Nomenclature (I.C.V.A.N.) appointed in Giessen, 1965, a Subcommittee on Histology and Embryology which started a working relation with the Subcommittee on Histology of the former International Anatomical Nomenclature Committee. In Mexico City, 1971, this Subcommittee presented a document entitled Nomina Histologica Veterinaria: A Working Draft as a basis for the continued work of the newly-appointed Subcommittee on Histological Nomenclature. This resulted in the editing of the Nomina Histologica Veterinaria: A Working Draft II (Toulouse, 1974), followed by preparations for publication of a Nomina Histologica Veterinaria.