Anillin Is a Prognostic Factor and Is Correlated with Genovariation in Pancreatic Cancer Based on Databases Analysis
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Myopia in African Americans Is Significantly Linked to Chromosome 7P15.2-14.2
Genetics Myopia in African Americans Is Significantly Linked to Chromosome 7p15.2-14.2 Claire L. Simpson,1,2,* Anthony M. Musolf,2,* Roberto Y. Cordero,1 Jennifer B. Cordero,1 Laura Portas,2 Federico Murgia,2 Deyana D. Lewis,2 Candace D. Middlebrooks,2 Elise B. Ciner,3 Joan E. Bailey-Wilson,1,† and Dwight Stambolian4,† 1Department of Genetics, Genomics and Informatics and Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, Tennessee, United States 2Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, Maryland, United States 3The Pennsylvania College of Optometry at Salus University, Elkins Park, Pennsylvania, United States 4Department of Ophthalmology, University of Pennsylvania, Philadelphia, Pennsylvania, United States Correspondence: Joan E. PURPOSE. The purpose of this study was to perform genetic linkage analysis and associ- Bailey-Wilson, NIH/NHGRI, 333 ation analysis on exome genotyping from highly aggregated African American families Cassell Drive, Suite 1200, Baltimore, with nonpathogenic myopia. African Americans are a particularly understudied popula- MD 21131, USA; tion with respect to myopia. [email protected]. METHODS. One hundred six African American families from the Philadelphia area with a CLS and AMM contributed equally to family history of myopia were genotyped using an Illumina ExomePlus array and merged this work and should be considered co-first authors. with previous microsatellite data. Myopia was initially measured in mean spherical equiv- JEB-W and DS contributed equally alent (MSE) and converted to a binary phenotype where individuals were identified as to this work and should be affected, unaffected, or unknown. -
Investigation of the Underlying Hub Genes and Molexular Pathogensis in Gastric Cancer by Integrated Bioinformatic Analyses
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.20.423656; this version posted December 22, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Investigation of the underlying hub genes and molexular pathogensis in gastric cancer by integrated bioinformatic analyses Basavaraj Vastrad1, Chanabasayya Vastrad*2 1. Department of Biochemistry, Basaveshwar College of Pharmacy, Gadag, Karnataka 582103, India. 2. Biostatistics and Bioinformatics, Chanabasava Nilaya, Bharthinagar, Dharwad 580001, Karanataka, India. * Chanabasayya Vastrad [email protected] Ph: +919480073398 Chanabasava Nilaya, Bharthinagar, Dharwad 580001 , Karanataka, India bioRxiv preprint doi: https://doi.org/10.1101/2020.12.20.423656; this version posted December 22, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract The high mortality rate of gastric cancer (GC) is in part due to the absence of initial disclosure of its biomarkers. The recognition of important genes associated in GC is therefore recommended to advance clinical prognosis, diagnosis and and treatment outcomes. The current investigation used the microarray dataset GSE113255 RNA seq data from the Gene Expression Omnibus database to diagnose differentially expressed genes (DEGs). Pathway and gene ontology enrichment analyses were performed, and a proteinprotein interaction network, modules, target genes - miRNA regulatory network and target genes - TF regulatory network were constructed and analyzed. Finally, validation of hub genes was performed. The 1008 DEGs identified consisted of 505 up regulated genes and 503 down regulated genes. -
Genetic Interactions Between ANLN and KDR Are Prognostic for Breast Cancer Survival
ONCOLOGY REPORTS 42: 2255-2266, 2019 Genetic interactions between ANLN and KDR are prognostic for breast cancer survival XIAOFENG DAI1*, XIAO CHEN2*, OLIVIER HAKIZIMANA2 and YI MEI2 1Wuxi School of Medicine, 2School of Biotechnology, Jiangnan University, Wuxi, Jiangsu 214122, P.R. China Received April 3, 2019; Accepted August 7, 2019 DOI: 10.3892/or.2019.7332 Abstract. Single nucleotide polymorphisms (SNPs) are the of ~627,000 annually estimated in 2018 (2). Uncontrolled most common genetic variation in mammalian cells with proliferative growth and angiogenesis are two basic cancer prognostic potential. Anillin-actin binding protein (ANLN) hallmarks governing the critical transitions towards malig- has been identified as being involved in PI3K/PTEN signaling, nancy during carcinogenesis (3). PI3K/PTEN signaling, which is critical in cell life/death control, and kinase insert frequently altered in breast carcinoma (4), confers a survival domain receptor (KDR) encodes a key receptor mediating advantage to tumor cells (5). Anillin, encoded by anillin the cancer angiogenesis/metastasis switch. Knowledge of actin-binding protein (ANLN), is an actin-binding protein, the intrinsic connections between PI3K/PTEN and KDR which has been identified as being involved in the PI3K/PTEN signaling, which represent two critical transitions in carcino- pathway (6,7). It is an F‑actin binding protein, which maintains genesis, led the present study to investigate the effects of the podocyte cytoskeletal dynamics, cell motility and signaling potential synergy between ANLN and KDR on breast cancer through its interaction with CD2-associated protein, which outcome and identify relevant SNPs driving such a synergy stimulates the phosphorylation of AKT at serine 473 (6,8). -
Transcriptional Recapitulation and Subversion Of
Open Access Research2007KaiseretVolume al. 8, Issue 7, Article R131 Transcriptional recapitulation and subversion of embryonic colon comment development by mouse colon tumor models and human colon cancer Sergio Kaiser¤*, Young-Kyu Park¤†, Jeffrey L Franklin†, Richard B Halberg‡, Ming Yu§, Walter J Jessen*, Johannes Freudenberg*, Xiaodi Chen‡, Kevin Haigis¶, Anil G Jegga*, Sue Kong*, Bhuvaneswari Sakthivel*, Huan Xu*, Timothy Reichling¥, Mohammad Azhar#, Gregory P Boivin**, reviews Reade B Roberts§, Anika C Bissahoyo§, Fausto Gonzales††, Greg C Bloom††, Steven Eschrich††, Scott L Carter‡‡, Jeremy E Aronow*, John Kleimeyer*, Michael Kleimeyer*, Vivek Ramaswamy*, Stephen H Settle†, Braden Boone†, Shawn Levy†, Jonathan M Graff§§, Thomas Doetschman#, Joanna Groden¥, William F Dove‡, David W Threadgill§, Timothy J Yeatman††, reports Robert J Coffey Jr† and Bruce J Aronow* Addresses: *Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA. †Departments of Medicine, and Cell and Developmental Biology, Vanderbilt University and Department of Veterans Affairs Medical Center, Nashville, TN 37232, USA. ‡McArdle Laboratory for Cancer Research, University of Wisconsin, Madison, WI 53706, USA. §Department of Genetics and Lineberger Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA. ¶Molecular Pathology Unit and Center for Cancer Research, Massachusetts deposited research General Hospital, Charlestown, MA 02129, USA. ¥Division of Human Cancer Genetics, The Ohio State University College of Medicine, Columbus, Ohio 43210-2207, USA. #Institute for Collaborative BioResearch, University of Arizona, Tucson, AZ 85721-0036, USA. **University of Cincinnati, Department of Pathology and Laboratory Medicine, Cincinnati, OH 45267, USA. ††H Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA. ‡‡Children's Hospital Informatics Program at the Harvard-MIT Division of Health Sciences and Technology (CHIP@HST), Harvard Medical School, Boston, Massachusetts 02115, USA. -
Identification of Molecular Targets in Head and Neck Squamous Cell Carcinomas Based on Genome-Wide Gene Expression Profiling
1489-1497 7/11/07 18:41 Page 1489 ONCOLOGY REPORTS 18: 1489-1497, 2007 Identification of molecular targets in head and neck squamous cell carcinomas based on genome-wide gene expression profiling SATOYA SHIMIZU1,2, NAOHIKO SEKI2, TAKASHI SUGIMOTO2, SHIGETOSHI HORIGUCHI1, HIDEKI TANZAWA3, TOYOYUKI HANAZAWA1 and YOSHITAKA OKAMOTO1 Departments of 1Otorhinolaryngology, 2Functional Genomics and 3Clinical Molecular Biology, Graduate School of Medicine, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8670, Japan Received May 21, 2007; Accepted June 28, 2007 Abstract. DNA amplifications activate oncogenes and are patients and metastases develop in 15-25% of patients (1). hallmarks of nearly all advanced cancers including head and Many factors, such as TNM stage, pathological grade and neck squamous cell carcinoma (HNSCC). Some oncogenes tumor site, influence the prognosis of HNSCC but are not show both DNA copy number gain and mRNA overexpression. sufficient to predict outcome. In addition, treatment often Chromosomal comparative genomic hybridization and oligo- results in impairment of functions such as speech and nucleotide microarrays were used to examine 8 HNSCC cell swallowing, cosmetic disfiguration and mental pain. These lines and a plot of gene expression levels relative to their inflictions significantly erode quality of life. To overcome this position on the chromosome was produced. Three highly situation, there is a need to find novel biomarkers that classify up-regulated genes, NT5C3, ANLN and INHBA, were patients into prognostic groups, to aid identification of high- identified on chromosome 7p14. These genes were subjected risk patients who may benefit from different treatments. to quantitative real-time RT-PCR on cDNA and genomic Comparative genomic hybridization (CGH) has facilitated DNA derived from 8 HNSCC cell lines. -
Deciphering the Molecular Profile of Plaques, Memory Decline And
ORIGINAL RESEARCH ARTICLE published: 16 April 2014 AGING NEUROSCIENCE doi: 10.3389/fnagi.2014.00075 Deciphering the molecular profile of plaques, memory decline and neuron loss in two mouse models for Alzheimer’s disease by deep sequencing Yvonne Bouter 1†,Tim Kacprowski 2,3†, Robert Weissmann4, Katharina Dietrich1, Henning Borgers 1, Andreas Brauß1, Christian Sperling 4, Oliver Wirths 1, Mario Albrecht 2,5, Lars R. Jensen4, Andreas W. Kuss 4* andThomas A. Bayer 1* 1 Division of Molecular Psychiatry, Georg-August-University Goettingen, University Medicine Goettingen, Goettingen, Germany 2 Department of Bioinformatics, Institute of Biometrics and Medical Informatics, University Medicine Greifswald, Greifswald, Germany 3 Department of Functional Genomics, Interfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany 4 Human Molecular Genetics, Department for Human Genetics of the Institute for Genetics and Functional Genomics, Institute for Human Genetics, University Medicine Greifswald, Ernst-Moritz-Arndt University Greifswald, Greifswald, Germany 5 Institute for Knowledge Discovery, Graz University of Technology, Graz, Austria Edited by: One of the central research questions on the etiology of Alzheimer’s disease (AD) is the Isidro Ferrer, University of Barcelona, elucidation of the molecular signatures triggered by the amyloid cascade of pathological Spain events. Next-generation sequencing allows the identification of genes involved in disease Reviewed by: Isidro Ferrer, University of Barcelona, processes in an unbiased manner. We have combined this technique with the analysis of Spain two AD mouse models: (1) The 5XFAD model develops early plaque formation, intraneu- Dietmar R. Thal, University of Ulm, ronal Ab aggregation, neuron loss, and behavioral deficits. (2)TheTg4–42 model expresses Germany N-truncated Ab4–42 and develops neuron loss and behavioral deficits albeit without plaque *Correspondence: formation. -
Identification of Novel Biomarkers in Hepatocellular Carcinoma By
Identication of Novel Biomarkers in Hepatocellular Carcinoma by Integrated Bioinformatical Analysis and Experimental Validation Chen Liao Yunnan University of Traditional Chinese Medicine Lanlan Wang Shaanxi University of Chinese Medicine Xiaoqiang Li Fourth Military Medical University Department of Social Sciences: Air Force Medical University Jinyu Bai Yunnan University of Traditional Chinese Medicine Jieqiong Wu Shaanxi University of Chinese Medicine Wei Zhang Shaanxi University of Chinese Medicine Hailong Shi Shaanxi University of Chinese Medicine Xuesong Feng Shaanxi University of Chinese Medicine Xu Chao ( [email protected] ) Shaanxi University of Chinese Medicine https://orcid.org/0000-0001-5520-4834 Research Keywords: Hepatocellular carcinoma, novel biomarkers, candidate small molecules, prognosis, bioinformatics analysis Posted Date: June 16th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-533830/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/14 Abstract Background: Hepatocellular carcinoma (HCC) is one of the most common poorly prognosed virulent neoplasms of the digestive system. In this study, we identied novel biomarkers associated with the pathogenesis of HCC aiming to provide new diagnostic and therapeutic approaches for HCC. Methods: Gene expression proles of GSE62232, GSE84402,GSE121248 and GSE45267 were obtained in GEO database. Differential expressed genes (DEGs) between HCC and normal samples were identied using the GEO2R tool and Venn diagram software.Database for Annotation, Visualization and Integrated Discovery (DAVID) were used to carry out enrichment analysis on gene ontology (GO) and the Kyoto Encyclopaedia of Genes and Genomes pathway (KEGG). The protein-protein interaction (PPI) network of DEGs was constructed by the Search Tool for the Retrieval of Interacting Genes (STRING) and visualized by Cytoscape. -
Majority of Differentially Expressed Genes Are Down-Regulated During Malignant Transformation in a Four-Stage Model
Majority of differentially expressed genes are down-regulated during malignant transformation in a four-stage model Frida Danielssona, Marie Skogsa, Mikael Hussb, Elton Rexhepaja, Gillian O’Hurleyc, Daniel Klevebringa,d, Fredrik Ponténc, Annica K. B. Gade, Mathias Uhléna, and Emma Lundberga,1 aScience for Life Laboratory, Royal Institute of Technology (KTH), SE-17121 Solna, Sweden; bScience for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, SE-17121 Solna, Sweden; cScience for Life Laboratory Uppsala, Department of Immunology, Genetics and Pathology, Uppsala University, SE-75185 Uppsala, Sweden; dDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, SE-17111 Stockholm, Sweden; and eDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, SE-17177 Stockholm, Sweden Edited by George Klein, Karolinska Institutet, Stockholm, Sweden, and approved March 12, 2013 (received for review October 19, 2012) The transformation of normal cells to malignant, metastatic tumor with the SV40 large-T antigen, and finally made to metastasize cells is a multistep process caused by the sequential acquirement by the introduction of oncogenic H-Ras (RASG12V) (9). We of genetic changes. To identify these changes, we compared the have used this cell-line model for a genome-wide, comprehensive transcriptomes and levels and distribution of proteins in a four- analysis of the molecular mechanisms that underlie malignant stage cell model of isogenically matched normal, immortalized, transformation and metastasis, using transcriptomics and im- fl fi transformed, and metastatic human cells, using deep transcrip- muno uorescence-based protein pro ling. tome sequencing and immunofluorescence microscopy. The data Results show that ∼6% (n = 1,357) of the human protein-coding genes are differentially expressed across the stages in the model. -
Oligodendroglial Anillin Facilitates Septin Assembly to Prevent Myelin Outfoldings
Oligodendroglial anillin facilitates septin assembly to prevent myelin outfoldings Dissertation for the award of the degree "Doctor rerum naturalium" (Dr. rer. nat) of the Georg-August University Göttingen within the doctoral program Biology of the Georg-August University School of Science (GAUSS) submitted by Michelle Scarlett Erwig from Neuss, Germany Göttingen, November 2018 Members of the Examination Board: Thesis committee: PD Dr. Hauke Werner (Reviewer) Department of Neurogenetics Max Planck Institute of Experimental Medicine Prof. Dr. Siegrid Löwel (Reviewer) Department of Systems Neuroscience Georg-August University, Göttingen Further members of the Examination Board: Prof. Dr. Martin Göpfert Department of Cellular Neurobiology Schwann-Schleiden Research Centre Georg-August University, Göttingen Prof. Dr. Ralf Heinrich Department of Cellular Neurobiology Schwann-Schleiden Research Centre Georg-August University, Göttingen Prof. Dr. Dr. Hannelore Ehrenreich Department of Clinical Neuroscience Max Planck Institute of Experimental Medicine Prof. Dr. Alexander Flügel Institute for Neuroimmunology and Multiple Sclerosis Research University Medical Center Göttingen Date of oral examination: January 28th, 2019 Declaration I hereby declare that the Ph.D. thesis entitled “Oligodendroglial anillin facilitates septin assembly to prevent myelin outfoldings”, has been written independently and with no other sources and aids than quoted. Göttingen, November 27th, 2018 __________________ Michelle Erwig Danksagung Ich möchte Prof. Klaus-Armin Nave Ph.D. danken, dass ich in seiner Abteilung arbeiten konnte. Danke für wissenschaftliche Diskussionen und eine Arbeitsatmosphäre in der alle auf einem Level diskutieren können. Ein großer Dank geht an PD Dr. Hauke Werner. Danke für die Betreuung der Arbeit und die Zusammenarbeit. Die wissenschaftlichen Diskussionen sowie die familiäre Arbeitsatmosphäre aber auch das Ermutigen, sich weiter zu entwickeln, werden mir immer in guter Erinnerung bleiben. -
ANLN Promotes Carcinogenesis in Oral Cancer by Regulating PI3K/Mtor Signaling Pathway
ANLN promotes carcinogenesis in oral cancer by regulating PI3K/mTOR signaling pathway Bing Wang Xinjiang Medical University Aliated First Hospital Xiaoli Zhang People's hospital of Xinjiang Uygur autonomous region Chenxi Li University Hospital Hamburg-Eppendorf (UKE) Ningning Liu Xinjiang medical university alliated rst hospital Min Hu Urumqi Myour dental clinic Zhongcheng Gong ( [email protected] ) Xinjiang Medical University Aliated First Hospital Research Keywords: ANLN, Oral cancer,; mTOR, PI3K/AKT signaling Posted Date: August 3rd, 2020 DOI: https://doi.org/10.21203/rs.3.rs-51660/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/17 Abstract Background: Oral cancer is a malignant disease threatening human’s life and severely reduces human’s life-quality. Gene ANLN was reported to promote progression in cancer. This study aims at investigating the role of ANLN and molecular mechanism in oral cancer. Methods: ANLN was down-regulated by RNAi technology. The effect of ANLN on cell behaviors including proliferation, cycle distribution, invasion, and apoptosis was detected. Western blotting analysis was used to disclose the mechanism of ANLN in oral cancer. Results: ANLN was shown to express signicantly higher in tumor tissues compared to the normal control tissues based on TCGA data. Patients with higher expression of ANLN displayed worse survival rate. Then ANLN was shown to express abundantly in cancer cell lines CA127 and HN30. When ANLN was reduced in CA127 and HN30 cells, cell proliferation and colony formation ability was inhibited. Cell invasion ability was suppressed. But cell apoptosis was induced reversely. -
Cell Cycle Arrest Through Indirect Transcriptional Repression by P53: I Have a DREAM
Cell Death and Differentiation (2018) 25, 114–132 Official journal of the Cell Death Differentiation Association OPEN www.nature.com/cdd Review Cell cycle arrest through indirect transcriptional repression by p53: I have a DREAM Kurt Engeland1 Activation of the p53 tumor suppressor can lead to cell cycle arrest. The key mechanism of p53-mediated arrest is transcriptional downregulation of many cell cycle genes. In recent years it has become evident that p53-dependent repression is controlled by the p53–p21–DREAM–E2F/CHR pathway (p53–DREAM pathway). DREAM is a transcriptional repressor that binds to E2F or CHR promoter sites. Gene regulation and deregulation by DREAM shares many mechanistic characteristics with the retinoblastoma pRB tumor suppressor that acts through E2F elements. However, because of its binding to E2F and CHR elements, DREAM regulates a larger set of target genes leading to regulatory functions distinct from pRB/E2F. The p53–DREAM pathway controls more than 250 mostly cell cycle-associated genes. The functional spectrum of these pathway targets spans from the G1 phase to the end of mitosis. Consequently, through downregulating the expression of gene products which are essential for progression through the cell cycle, the p53–DREAM pathway participates in the control of all checkpoints from DNA synthesis to cytokinesis including G1/S, G2/M and spindle assembly checkpoints. Therefore, defects in the p53–DREAM pathway contribute to a general loss of checkpoint control. Furthermore, deregulation of DREAM target genes promotes chromosomal instability and aneuploidy of cancer cells. Also, DREAM regulation is abrogated by the human papilloma virus HPV E7 protein linking the p53–DREAM pathway to carcinogenesis by HPV.Another feature of the pathway is that it downregulates many genes involved in DNA repair and telomere maintenance as well as Fanconi anemia. -
ANLN Promotes Carcinogenesis in Oral Cancer by Regulating the PI3K
Wang et al. Head & Face Medicine (2021) 17:18 https://doi.org/10.1186/s13005-021-00269-z RESEARCH Open Access ANLN promotes carcinogenesis in oral cancer by regulating the PI3K/mTOR signaling pathway Bing Wang1†, Xiao-li Zhang2†, Chen-xi Li1,3*†, Ning-ning Liu4, Min Hu5 and Zhong-cheng Gong1* Abstract Background: Oral cancer is a malignant disease that threatenshuman life and greatly reducespatientquality of life. ANLN was reported to promote the progression of cancer. This study aims to investigate the role of ANLNin oral cancer and the underlying molecular mechanism. Methods: ANLN expression was downregulated by RNAi technology. The effect of ANLN on cell behaviors, including proliferation, cell cycle progression, invasion, and apoptosis, was detected. Western blotting analysis was used to explore the mechanism by whichANLN functions in oral cancer. Results: Data from TCGA database showed that ANLN was expressed at significantly higher levels in tumor tissues thanin normal control tissues. Patients with higher ANLN expression exhibitedshorter survivaltimes. ANLN was alsoabundantly expressedin the cancer cell lines CAL27 and HN30. When ANLN was knocked down in CAL27 and HN30 cells, cell proliferation and colony formation weredecreased. The cell invasion ability was also inhibited. However, the cell apoptosis rate was increased. In addition, the levels of critical members of the PI3K signaling pathway, includingPI3K, mTOR, Akt, and PDK-1, were significantlyreducedafter ANLN was knocked down in CAL27 cells. Conclusions: ANLN contributes to oral cancerprogressionand affects activation ofthe PI3K/mTOR signaling pathway. This study providesa new potential targetfor drug development and treatment in oral cancer. Keywords: ANLN, Oral cancer, mTOR, PI3K signaling pathway Background glomerulosclerosis, and additionalexperiments have suggested Actin is an important moleculethat is responsible for cell mo- that ANLN contributes to tumor progression [2].