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Mutations Affecting Cell Fates and Cellular Rearrangements During Gastrulation in Zebrafish
Development 123, 67-80 67 Printed in Great Britain © The Company of Biologists Limited 1996 DEV3335 Mutations affecting cell fates and cellular rearrangements during gastrulation in zebrafish Lilianna Solnica-Krezel†, Derek L. Stemple, Eliza Mountcastle-Shah, Zehava Rangini‡, Stephan C. F. Neuhauss, Jarema Malicki, Alexander F. Schier§, Didier Y. R. Stainier¶, Fried Zwartkruis**, Salim Abdelilah and Wolfgang Driever* Cardiovascular Research Center, Massachusetts General Hospital and Harvard Medical School, 13th Street, Bldg. 149, Charlestown, MA 02129, USA †Present address: Department of Molecular Biology, Vanderbilt University, Box 1820, Station B, Nashville, TN 37235, USA ‡Present address: Department of Oncology, Sharett Institute, Hadassah Hospital, Jerusalem 91120, Israel §Present address: Skirball Institute of Biomolecular Medicine, NYU Medical Center, 550 First Avenue, New York, NY 10016, USA ¶Present address: School of Medicine, Department of Biochemistry and Biophysics, UCSF, San Francisco, CA 94143-0554, USA **Present address: Laboratory for Physiological Chemistry, Utrecht University, Universiteitsweg 100, 3584 CG Utrecht, The Netherlands *Author for correspondence (e-mail: [email protected]) SUMMARY One of the major challenges of developmental biology is mutations in these two groups identify genes necessary for understanding the inductive and morphogenetic processes the formation, maintenance or function of the dorsal that shape the vertebrate embryo. In a large-scale genetic organizer and the ventral signaling pathway, respectively. screen for zygotic effect, embryonic lethal mutations in Mutations in the third group affect primarily cellular zebrafish we have identified 25 mutations that affect spec- rearrangements during gastrulation and have complex ification of cell fates and/or cellular rearrangements during effects on cell fates in the embryo. -
Hop Is an Unusual Homeobox Gene That Modulates Cardiac Development
Cell, Vol. 110, 713–723, September 20, 2002, Copyright 2002 by Cell Press Hop Is an Unusual Homeobox Gene that Modulates Cardiac Development Fabian Chen,1 Hyun Kook,1 Rita Milewski,1 tion and are arranged in the genome in the order in Aaron D. Gitler,1,2 Min Min Lu,1 Jun Li,1 which they are expressed along the axis of the embryo. Ronniel Nazarian,1 Robert Schnepp,1 The “Hox code” represents an important paradigm for Kuangyu Jen,1 Christine Biben,3 Greg Runke,2 the definition of positional identity during embryogene- Joel P. Mackay,5 Jiri Novotny,3 sis in which the specific pattern of overlapping Hox gene Robert J. Schwartz,6 Richard P. Harvey,3,4 expression defines cellular identity. A plethora of non- Mary C. Mullins,2 and Jonathan A. Epstein1,2,7 clustered Hox genes have been identified that are scat- 1Department of Medicine tered throughout the genome and play additional roles 2 Department of Cell and Developmental Biology in cell fate specification in all organs and tissues of the University of Pennsylvania Health System body. Philadelphia, Pennsylvania 19104 Hox genes are defined by the presence of a 60 amino 3 The Victor Chang Cardiac Research Institute acid domain that mediates DNA binding. This domain Darlinghurst, NSW 2010 has been analyzed by NMR spectroscopy and X-ray Australia crystallography either free or in association with DNA 4 Faculties of Medicine and Life Sciences (Kissinger et al., 1990; Qian et al., 1989; Wolberger et University of New South Wales al., 1991). The 60 amino acid homeodomain is capable Kensington, NSW 2051 of adopting a fixed structure in solution composed of Australia three ␣ helices in which the second and third helices 5 School of Molecular and Microbial Biosciences form a helix-turn-helix motif. -
Pig Antibodies
Pig Antibodies gene_name sku Entry_Name Protein_Names Organism Length Identity CDX‐2 ARP31476_P050 D0V4H7_PIG Caudal type homeobox 2 (Fragment) Sus scrofa (Pig) 147 100.00% CDX‐2 ARP31476_P050 A7MAE3_PIG Caudal type homeobox transcription factor 2 (Fragment) Sus scrofa (Pig) 75 100.00% Tnnt3 ARP51286_P050 Q75NH3_PIG Troponin T fast skeletal muscle type Sus scrofa (Pig) 271 85.00% Tnnt3 ARP51286_P050 Q75NH2_PIG Troponin T fast skeletal muscle type Sus scrofa (Pig) 266 85.00% Tnnt3 ARP51286_P050 Q75NH1_PIG Troponin T fast skeletal muscle type Sus scrofa (Pig) 260 85.00% Tnnt3 ARP51286_P050 Q75NH0_PIG Troponin T fast skeletal muscle type Sus scrofa (Pig) 250 85.00% Tnnt3 ARP51286_P050 Q75NG8_PIG Troponin T fast skeletal muscle type Sus scrofa (Pig) 266 85.00% Tnnt3 ARP51286_P050 Q75NG7_PIG Troponin T fast skeletal muscle type Sus scrofa (Pig) 260 85.00% Tnnt3 ARP51286_P050 Q75NG6_PIG Troponin T fast skeletal muscle type Sus scrofa (Pig) 250 85.00% Tnnt3 ARP51286_P050 TNNT3_PIG Troponin T, fast skeletal muscle (TnTf) Sus scrofa (Pig) 271 85.00% ORF Names:PANDA_000462 EMBL EFB13877.1OrganismAiluropod High mobility group protein B2 (High mobility group protein a melanoleuca (Giant panda) ARP31939_P050 HMGB2_PIG 2) (HMG‐2) Sus scrofa (Pig) 210 100.00% Agpat5 ARP47429_P050 B8XTR3_PIG 1‐acylglycerol‐3‐phosphate O‐acyltransferase 5 Sus scrofa (Pig) 365 85.00% irf9 ARP31200_P050 Q29390_PIG Transcriptional regulator ISGF3 gamma subunit (Fragment) Sus scrofa (Pig) 57 100.00% irf9 ARP31200_P050 Q0GFA1_PIG Interferon regulatory factor 9 Sus scrofa (Pig) -
Teri Melese, Ph.D
Prepared: 02/015 University of California, San Diego Curriculum Vitae Name: Teri Melese, Ph.D Current Position: UCSD Assistant Vice Chancellor, Industry Research Alliances Adjunct Associate Professor, Department of Medicine and Rady School of Management Last Position Held: Adjunct Associate Professor UCSF Department of Medicine, School of Medicine, 2005-2012 UCSF Dean’s Office: Director of Business Strategy and Development, School of Medicine UCSF Helen Diller Comprehensive Cancer Center Executive Committee: Associate Director for Strategic Alliances Address: University of California, San Diego Office of Research Affairs 9500 Gilman Drive #0910 La Jolla, CA 92093-0043 Tel: (858) 822-5247 mobile: (408) 373-3651 [email protected] Education: 1975-77 University of California, Berkeley A.B. Neurobiology/ Literature 1977-82 University of California, San Francisco Ph.D. Regents Fellow 1982-86 University of California, Los Angeles Postdoctoral Fellow Biochemistry 1986-87 University of California, Los Angeles American Cancer Sr. Research Fellow Molecular Biology Principal Positions Held: 1988-92 Columbia University, New York Assistant Professor Biological Sciences 1993-97 Columbia University, New York Associate Professor Biological Sciences 1997-99 Columbia University, New York Adjunct Associate Professor Biological Sciences 1997-01 Iconix Pharmaceuticals Mountain View Founding Member & Director Chemical Genomics 2001-2012 University of California, San Francisco Adjunct Full Professor Step II Medicine Present University of California, San Diego -
Molekulare Untersuchungen Zur Musterbildung Im Einfachen Vielzeller Hydra
Molekulare Untersuchungen zur Musterbildung im einfachen Vielzeller Hydra Dissertation zur Erlangung des Doktorgrades der Mathematisch-Naturwissenschaftlichen Fakultät der Christian-Albrechts-Universität zu Kiel vorgelegt von René Augustin Kiel 2003 Referent/in: ...........................................Prof. Dr. T. C. G. Bosch....... Korreferent/in: .......................................Prof. Dr. M. Leippe............... Tag der mündlichen Prüfung: ..............10.02.2004............................. Zum Druck genehmigt: Kiel, ................10.02.2004............................. Teile der vorliegenden Arbeit wurden bereits veröffentlicht oder zur Publikation vorbereitet: Fedders, H. and Augustin, R., Bosch, T.C.G. 2003. A Dickkopf-3 related gene is expressed in differentiating nematocytes in the basal metazoan Hydra. Dev. Genes Evol.: im Druck INHALTSVERZEICHNIS Inhaltsverzeichnis ABKÜRZUNGEN: 9 MOLEKULARE UNTERSUCHUNGEN ZUR MUSTERBILDUNG IM EINFACHEN VIELZELLER HYDRA 13 1. EINLEITUNG 13 1.1 Hydra als Modellorganismus der Entwicklungsbiologie 13 1.1.1 Systematik, Morphologie und Biologie 13 1.1.2 Die interstitielle Zelllinie und die Differenzierung der Nesselzellen 17 1.2 Muster- und Achsenbildung in Hydra 18 1.2.1 Musterbildung in Hydra nach Gierer & Meinhardt 19 1.2.2 Signalmoleküle in Hydra 21 1.2.3 Regulatorische Gene in Hydra 26 1.3 Zielsetzung der Arbeit 31 2. ERGEBNISSE 32 2.1 Identifizierung von HEADY Zielgenen 32 2.1.1 Ein Dickkopf homologes Protein in Hydra 32 2.1.2 Suche nach HEADY – Zielgenen mittels SSH 42 2.2 Charakterisierung der Vorgänge bei Regeneration und Knospung in Hydra 59 2.2.1 Hybridisierung /Vergleich von Filtern mit Klonen einer normalisierten cDNA Bank 59 2.2.2 Identifizierung von Unterschieden in der Genexpression bei Knospung und Regeneration in Hydra durch SSH und cDNA Macroarray Hybridisierung 67 3. -
Molecular Chaperones in Cancer
CNIO - SPANISH”LA CAIXA”NATIONAL CANCER FOUNDATION RESEARCH CENTRE FRONTIERS MEETINGS 2017 Madrid 2nd- 4th May 2017 MOLECULAR CHAPERONES IN CANCER IN MEMORY OF SUSAN LINDQUIST Organisers Nabil Djouder Spanish National Cancer Research Centre (CNIO), Madrid, Spain Wilhelm Krek Institute for Molecular Health Sciences Zurich, Switzerland Paul Workman The Institute of Cancer Research London, UK Xiaohong Helena Yang Cancer Cell Cambridge, US EXCELENCIA MINISTERIO DE ECONOMÍA, INDUSTRIA SEVERO Y COMPETITIVIDAD OCHOA CNIO - SPANISH”LA CAIXA”NATIONAL CANCER FOUNDATION RESEARCH CENTRE FRONTIERS MEETINGS 2017 Madrid 2nd- 4th May 2017 MOLECULAR CHAPERONES IN CANCER CNIO - SPANISH”LA CAIXA”NATIONAL CANCER FOUNDATION RESEARCH CENTRE FRONTIERS MEETINGS 2017 Madrid 2nd- 4th May 2017 MOLECULAR CHAPERONES IN CANCER Summary 07 PROGRAMME 19 KEYNOTE LECTURE 23 SESSIONS 23 S #1 PROTEIN QUALITY CONTROL 31 S #2 FOLDING, MISFOLDING AND AGGREGATION 41 S #3 STRESS MECHANISMS IN CANCER 49 S #4 CHAPERONES IN CANCER 59 S #5 TARGETING CHAPERONES: CHAPERONOTHERAPY 67 CLOSING LECTURE 69 ORGANISERS AND SPEAKERS’ BIOGRAPHIES 99 POSTER SESSIONS 119 Previous CNIO Frontiers Meetings and CNIO Cancer Conferences 05 CNIO - SPANISH”LA CAIXA”NATIONAL CANCER FOUNDATION RESEARCH CENTRE FRONTIERS MEETINGS 2017 Madrid 2nd- 4th May 2017 MOLECULAR CHAPERONES IN CANCER PROGRAMME 07 PROGRAMME Madrid 2nd- 4th May 2017 MOLECULAR CHAPERONES IN CANCER Venue: Spanish National Cancer Research Centre – CNIO Auditorium, Madrid, Spain Chairpersons and organizing committee: Nabil Djouder, Spanish National Cancer Research Centre, Madrid, Spain Wilhelm Krek, Institute for Molecular Health Sciences, ETH, Zurich, Switzerland Paul Workman, The Institute of Cancer Research, London, UK Xiaohong Helena Yang, Cancer Cell, Cambridge, USA Rationale: Molecular chaperones play key roles in the folding, stability and activity of proteins in normal cell homeostasis and disease pa- thology, including cancer. -
New Frontiers
PROGRAM & BOOK OF ABSTRACTS JUNE 13-16, 2009 • PORTLAND, OREGON New Frontiers Children’s Tumor FoundaTION 95 PINE STREET, 16TH FLOOR, NEW YORK, NY 10005 | WWW.CTF.ORG | 212.344.6633 Dear NF Conference Attendees: On behalf of the Children’s Tumor Foundation, welcome to the 2009 NF Conference: New Frontiers. The theme references the meeting content and also Portland itself, historically a gateway port of the Pacific North West. The urban setting offers a ‘new frontier’ in comparison to the mountain and beach locales of past NF Conferences, but one which we feel you will enjoy. Portland is an easy-going city offering history, beauty and relaxation – features encapsulated in our host hotel The Nines, itself a part of the tapestry of Portland history, renovated from the former landmark Meier & Frank department store. The last year has seen major NF research advances. The dovetailing of discovery, translation and the clinic can be seen throughout the meeting. We are firmly in the age of NF clinical trials and proud that the Children’s Tumor Foundation is part of this advance: in 2009 we funded our first two pilot Clinical Trial Awards. We continue to build a pipeline of candidate NF drug therapies through the Foundation’s multi-center NF Preclinical Consortium and the seed grant Drug Discovery Initiative (DDI) program. Through these translational initiatives we are cultivating NF collaborations with the biotechnology and pharmaceutical sector, a critical factor in moving NF research forward to the clinic. At the same time, basic research advances continue, such as in the unraveling of schwannomatosis. -
PAX Genes in Childhood Oncogenesis: Developmental Biology Gone Awry?
Oncogene (2015) 34, 2681–2689 © 2015 Macmillan Publishers Limited All rights reserved 0950-9232/15 www.nature.com/onc REVIEW PAX genes in childhood oncogenesis: developmental biology gone awry? P Mahajan1, PJ Leavey1 and RL Galindo1,2,3 Childhood solid tumors often arise from embryonal-like cells, which are distinct from the epithelial cancers observed in adults, and etiologically can be considered as ‘developmental patterning gone awry’. Paired-box (PAX) genes encode a family of evolutionarily conserved transcription factors that are important regulators of cell lineage specification, migration and tissue patterning. PAX loss-of-function mutations are well known to cause potent developmental phenotypes in animal models and underlie genetic disease in humans, whereas dysregulation and/or genetic modification of PAX genes have been shown to function as critical triggers for human tumorigenesis. Consequently, exploring PAX-related pathobiology generates insights into both normal developmental biology and key molecular mechanisms that underlie pediatric cancer, which are the topics of this review. Oncogene (2015) 34, 2681–2689; doi:10.1038/onc.2014.209; published online 21 July 2014 INTRODUCTION developmental mechanisms and PAX genes in medical (adult) The developmental mechanisms necessary to generate a fully oncology. patterned, complex organism from a nascent embryo are precise. Undifferentiated primordia undergo a vast array of cell lineage specification, migration and patterning, and differentiate into an STRUCTURAL MOTIFS DEFINE THE PAX FAMILY SUBGROUPS ensemble of interdependent connective, muscle, nervous and The mammalian PAX family of transcription factors is comprised of epithelial tissues. Dysregulation of these precise developmental nine members that function as ‘master regulators’ of organo- programs cause various diseases/disorders, including—and genesis4 (Figure 1). -
Regulation of Ets Function by Protein ± Protein Interactions
Oncogene (2000) 19, 6514 ± 6523 ã 2000 Macmillan Publishers Ltd All rights reserved 0950 ± 9232/00 $15.00 www.nature.com/onc Regulation of Ets function by protein ± protein interactions Runzhao Li*,1,2,4, Huiping Pei1,4 and Dennis K Watson1,3,4 1Center for Molecular and Structural Biology, Medical University of South Carolina, Charleston, South Carolina, SC 29425, USA; 2Department of Medicine, Medical University of South Carolina, Charleston, South Carolina, SC 29425, USA; 3Department of Pathology and Laboratory Medicine, Medical University of South Carolina, Charleston, South Carolina, SC 29425, USA; 4Hollings Cancer Center, Medical University of South Carolina, Charleston, South Carolina, SC 29425, USA Ets proteins are a family of transcription factors that biological processes. However, many physical interac- share an 85 amino acid conserved DNA binding domain, tions cannot be demonstrated by direct binding assays the ETS domain. Over 25 mammalian Ets family due to the weak anity, transient binding or absence members control important biological processes, includ- of required cofactors, such as DNA or a third partner. ing cellular proliferation, dierentiation, lymphocyte In recent years, based on the improved technologies, development and activation, transformation and apopto- such as two hybrid interactive screens, many novel sis by recognizing the GGA core motif in the promoter proteins have been identi®ed as Ets family partners. or enhancer of their target genes. Protein ± protein Evaluation of the physical interaction and correlation interactions regulates DNA binding, subcellular localiza- with function has greatly advanced our knowledge on tion, target gene selection and transcriptional activity of regulation of eukaryotic gene transcription. The net- Ets proteins. -
Open Sarathy Danyas Schreyerthesis Final.Pdf
THE PENNSYLVANIA STATE UNIVERSITY SCHREYER HONORS COLLEGE DEPARTMENT OF PHYSICS THE EFFECT OF EXTERNAL SIGNALS AND COMBINATORIAL INTERVENTIONS IN A NETWORK MODEL OF THE EPITHELIAL-TO-MESENCHYMAL TRANSITION DANYAS SARATHY SPRING 2017 A thesis submitted in partial fulfillment of the requirements for a baccalaureate degree in Physics with honors in Physics Reviewed and approved* by the following: Dr. Reka Albert Distinguished Professor of Physics and Biology Thesis Supervisor Dr. Richard Robinett Professor of Physics Honors Adviser * Signatures are on file in the Schreyer Honors College. i ABSTRACT The epithelial-mesenchymal transition (EMT) is a well-studied cell fate that appears in both physiological processes (embryonic development and wound healing), and in pathologically detrimental processes like cancer. This thesis aimed to study the effect of combinatorial interventions in a network model of EMT postulated by Steinway et al. These researchers, having developed a dynamic model of the intracellular signaling network, studied the effect of internal node knockouts and interventions—the goal of this thesis, however, was to study the effect of external signals and source nodes, and to also combine constitutive activation of source nodes with internal node knockouts. It was found that every source node in EMT—HGF, PDGF, IGF1, EGF, FGR, goosecoid, and hypoxia—drove the transition when constitutively activated through an asynchronous update method using BooleanNet. These nodes varied in their rate of achieving full cell turnover, and hypoxia was the fastest state that induced EMT. When Hypoxia was combined with three internal node knockouts—SMAD, TGFβ, and MiR200—three different patterns emerged. The node knockouts either prevented the transition from occurring altogether, did not affect the transition, or slowed down the rate at which the system reached the mesenchymal attractor. -
Novel Mechanisms of Transcriptional Repression by the Paired- Like Homeodomain Transcription Factor Goosecoid
Novel mechanisms of transcriptional repression by the paired- like homeodomain transcription factor Goosecoid. by Luisa Izzi A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Department of Medical Biophysics University of Toronto © Copyright by Luisa Izzi (2008) Novel mechanisms of transcriptional repression by the paired-like homeodomain transcription factor Goosecoid Doctor of Philosophy, 2008 Luisa Izzi Department of Medical Biophysics, University of Toronto Abstract Gastrulation is the process by which the three germ layers are generated during vertebrate development. Nodal ligands, which form a subgroup of the Transforming Growth Factor β (TGFβ) superfamily, regulate the expression several transcription factors implicated in gastrulation. Among these are the paired-like homeodomain transcription factors Goosecoid (Gsc) and Mixl1. At the molecular level, Gsc has been described to function as a transcriptional repressor by directly binding to paired homedomain binding sites on target promoters. Here, I describe a novel mechanism of transcriptional repression by Gsc. Using a molecular and embryological approach, I demonstrate that the forkhead transcription factor Foxh1, a major transducer of Nodal signaling, associates with Gsc which in turn recruits histone deacetylases to negatively regulate Mixl1 expression during early mouse development. Post-translational modification of transcription factors by SUMO proteins represents an important mechanism through which their activity is controlled. Here, I also demonstrate that Gsc is sumoylated in mammalian cells by members of the PIAS family of proteins and this modification potentiates the repressive activity of Gsc on direct targets such as the Xbra and Gsc promoters, but not on indirect targets such as Mixl1. -
LONG-TERM MEMBERS 25+ Years of Membership
LONG-TERM MEMBERS 25+ Years of Membership Stuart A. Aaronson, MD Stephen P. Ackland, MBBS Carol Aghajanian, MD Steven A. Akman, MD Icahn School of Medicine at Mount Sinai University of Newcastle Memorial Sloan Kettering Cancer Center Roper St. Francis Healthcare United States Australia United States United States Active Member Active Member Active Member Active Member 38 Years of Membership 33 Years of Membership 27 Years of Membership 35 Years of Membership Cory Abate-Shen, PhD Edward M. Acton, PhD Irina U. Agoulnik, PhD Emmanuel T. Akporiaye, PhD Columbia University Irving Medical United States Florida International University Verana Therapeutics Center Emeritus Member United States United States United States 42 Years of Membership Active Member Emeritus Member Active Member 25 Years of Membership 31 Years of Membership 26 Years of Membership David J. Adams, PhD Duke University Medical Center Imran Ahmad, PhD Ala-Eddin Al Moustafa, PhD James L. Abbruzzese, MD United States Northwestern Medicine McGill University Duke University Emeritus Member United States Canada United States 32 Years of Membership Active Member Active Member Active Member 25 Years of Membership 26 Years of Membership 32 Years of Membership Gregory P. Adams, PhD Elucida Oncology Nihal Ahmad, PhD Abdul Al Saadi, PhD Ehtesham A. Abdi, MBBS United States Univ. of Wisconsin Madison Sch. of Med. William Beaumont Hospital The Tweed Hospital Active Member & Public Health United States Australia 29 Years of Membership United States Emeritus Member Emeritus Member Active Member 52 Years of Membership 33 Years of Membership Lucile L. Adams-Campbell, PhD 25 Years of Membership Georgetown Lombardi Comprehensive Suresh K.