Simulating the Ocean's Chlorophyll Dynamic Range from Coastal Upwelling to Oligotrophy
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Trophic Ecology of Gelatinous Zooplankton in Oceanic Food Webs of the Eastern Tropical Atlantic Assessed by Stable Isotope Analysis
Limnol. Oceanogr. 9999, 2020, 1–17 © 2020 The Authors. Limnology and Oceanography published by Wiley Periodicals LLC on behalf of Association for the Sciences of Limnology and Oceanography. doi: 10.1002/lno.11605 Tackling the jelly web: Trophic ecology of gelatinous zooplankton in oceanic food webs of the eastern tropical Atlantic assessed by stable isotope analysis Xupeng Chi ,1,2* Jan Dierking,2 Henk-Jan Hoving,2 Florian Lüskow,3,4 Anneke Denda,5 Bernd Christiansen,5 Ulrich Sommer,2 Thomas Hansen,2 Jamileh Javidpour2,6 1CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China 2Marine Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany 3Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, Vancouver, British Columbia, Canada 4Institute for the Oceans and Fisheries, University of British Columbia, Vancouver, British Columbia, Canada 5Institute of Marine Ecosystem and Fishery Science (IMF), Universität Hamburg, Hamburg, Germany 6Department of Biology, University of Southern Denmark, Odense M, Denmark Abstract Gelatinous zooplankton can be present in high biomass and taxonomic diversity in planktonic oceanic food webs, yet the trophic structuring and importance of this “jelly web” remain incompletely understood. To address this knowledge gap, we provide a holistic trophic characterization of a jelly web in the eastern tropical Atlantic, based on δ13C and δ15N stable isotope analysis of a unique gelatinous zooplankton sample set. The jelly web covered most of the isotopic niche space of the entire planktonic oceanic food web, spanning > 3 tro- phic levels, ranging from herbivores (e.g., pyrosomes) to higher predators (e.g., ctenophores), highlighting the diverse functional roles and broad possible food web relevance of gelatinous zooplankton. -
Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun
OCEANOGRAPHY – Vol.II - Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun BIOLOGICAL OCEANOGRAPHY Legendre, Louis and Rassoulzadegan, Fereidoun Laboratoire d'Océanographie de Villefranche, France. Keywords: Algae, allochthonous nutrient, aphotic zone, autochthonous nutrient, Auxotrophs, bacteria, bacterioplankton, benthos, carbon dioxide, carnivory, chelator, chemoautotrophs, ciliates, coastal eutrophication, coccolithophores, convection, crustaceans, cyanobacteria, detritus, diatoms, dinoflagellates, disphotic zone, dissolved organic carbon (DOC), dissolved organic matter (DOM), ecosystem, eukaryotes, euphotic zone, eutrophic, excretion, exoenzymes, exudation, fecal pellet, femtoplankton, fish, fish lavae, flagellates, food web, foraminifers, fungi, harmful algal blooms (HABs), herbivorous food web, herbivory, heterotrophs, holoplankton, ichthyoplankton, irradiance, labile, large planktonic microphages, lysis, macroplankton, marine snow, megaplankton, meroplankton, mesoplankton, metazoan, metazooplankton, microbial food web, microbial loop, microheterotrophs, microplankton, mixotrophs, mollusks, multivorous food web, mutualism, mycoplankton, nanoplankton, nekton, net community production (NCP), neuston, new production, nutrient limitation, nutrient (macro-, micro-, inorganic, organic), oligotrophic, omnivory, osmotrophs, particulate organic carbon (POC), particulate organic matter (POM), pelagic, phagocytosis, phagotrophs, photoautotorphs, photosynthesis, phytoplankton, phytoplankton bloom, picoplankton, plankton, -
Marine Microbiology at Scripps
81832_Ocean 8/28/03 7:18 PM Page 67 Special Issue—Scripps Centennial Marine Microbiology at Scripps A. Aristides Yayanos Scripps Institution of Oceanography, University of California, • San Diego, California USA Marine microbiology is the study of the smallest isolated marine bioluminescent bacteria, isolated and organisms found in the oceans—bacteria and archaea, characterized sulfate-reducing bacteria, and showed many eukaryotes (among the protozoa, fungi, and denitrifying bacteria could both produce and consume plants), and viruses. Most microorganisms can be seen nitrous oxide, now known to be an important green- only with a microscope. Microbes pervade the oceans, house gas. Beijerinck also founded the field of virology its sediments, and some hydrothermal fluids and through his work on plant viruses (van Iterson et al., exhibit solitary life styles as well as complex relation- 1983). Mills (1989) describes the significance of the ships with animals, other microorganisms, and each work of Beijerink and Winogradsky to plankton other. The skeletal remains of microorganisms form the research and marine chemistry. largest component of sedimentary fossils whose study Around 1903, bacteriology in California was reveals Earth’s history. The enormous morphological, emerging in the areas of medicine and public health physiological, and taxonomic diversity of marine and accordingly was developing into an academic dis- microorganisms remains far from adequately cipline in medical schools (McClung and Meyer, 1974). described and studied. Because the sea receives terres- Whereas the branch of microbiology dealing with bac- trial microorganisms from rivers, sewage outfalls, and teria and viruses was just beginning, the branch con- other sources, marine microbiology also includes the cerning protozoa and algae was a relatively more estab- study of alien microorganisms. -
Biological Oceanography
MEETINGS & WORKSHOPS BOOKS & VIDEOS COMPARISON OF BIOLOGICALOCEANOGRAPHY: TERRES ,C AN EARLY I--hSTOR¥, 1870 TO 1960 MARINE ECOLOGICAL SYSTEMS By Eric L. Mills A WORKSHOP on this subject 1989,378 pp., $42.50, Cloth, Cornell University Press, Ithaca, NY. was held in 1989 with partial National Reviewed by David J. Carlson Science Foundation support. The re- In the mid-nineteenth century, biologists dence), the initial biological oceanographers port (copies available from J. Steele) studying the oceans were mostly interested were male (Sheina Marshall of the Scottish discusses the various problems, lo- in discovering deep-sea organisms. Today Marine Biological Association laboratory gistic and conceptual, in making such biological oceanographers pay most atten- and Penelope Jenkin and Marie Lebour of the comparisons, but its main conclu- tion to processes in the surface ocean. In his Plymouth Laboratoryare notable exceptions). sion is that we should have work- latest volume of oceanographic history, Mills introduces us first to Victor Hensen, a shops or summer schools that focus published by Cornell University Press in its German biochemist, anatomist and physi- on specific topics where interactions History of Science Series, Eric Mills de- ologist who turned his attention to marine between the different sectors would scribes the period from 1870 to 1960 during subjects when nascent Germany formed a be most fruitful. A recent meeting of which focus shifted from deep-sea natural commission for the study of its seas. Hensen the Steering Committee (J. Cohen, P. history to upper ocean plankton dynamics recognized that small planktonic organisms Dayton, T. Kratz, S. Levin, R. and when, as a result, biological oceanogra- were important components of marine sys- Ricklefs and J. -
Biological Oceanography in Canada (With Special Reference to Federal Government Science)
PROC. N.S. INST. SCI. (2006) Volume 43, Part 2, pp. 129-158 BIOLOGICAL OCEANOGRAPHY IN CANADA (WITH SPECIAL REFERENCE TO FEDERAL GOVERNMENT SCIENCE) W. G. HARRISON Ecosystem Research Division, Science Branch Department of Fisheries and Oceans, Maritimes Region Bedford Institute of Oceanography PO Box 1006 Dartmouth, Nova Scotia B2Y 4A2 This is a personal account of the history, accomplishments and future of biological oceanography in Canada with emphasis on Canadian government research. Canadian biological oceanographers have a rich history pre-dating the formal beginning of marine scientific research in the country with the establishment of the St Andrews and Nanaimo field stations in the early 1900s. Over the years, they have distinguished themselves by being leaders in the early developments of the discipline, including methodologies, concepts and understanding of both the pelagic and benthic ecosystems. In more recent years, Canadian biological oceanographers have led in the conceptualization, planning and implementation of major interdisciplinary/international research initiatives on climate change and ecosystem dynamics. Additionally, they are making important contributions to ecosystem and climate monitoring, research aimed at understanding the influence of ecosystems on harvestable living resource variability and on climate change, and development and application of ecosystem and climate models. Canadian biological oceanographers have made and continue to make significant contributions to the understanding of the biology of the oceans and its interactions with the physical, chemical and geological world. The challenge of solving the complex scientific and societal problems of the future will require better planning, coordination and stronger commitment to the ocean sciences by universities and government than is currently in place. -
Distribution of Zooplankton and Nekton Above Hydrothermal Vents on the Juan De Fuca and Explorer Ridges
Distribution of Zooplankton and Nekton above Hydrothermal Vents on the Juan de Fuca and Explorer Ridges. Kristina Michelle Skebo B.Sc., University of Victoria, 1994 A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE in the Department of Biology O Kristina Michelle Skebo, 2004 University of Victoria All rights reserved. This thesis may not be reproduced in whole or in part, by photocopy or other means, without the permission of the author. Supervisor: Dr. Verena Tunnicliffe ABSTRACT Buoyant hydrothermal vent fluids vertically advect near-bottom production and contain compounds that support bacterial growth. Previous studies have shown that zooplankton aggregating above the neutrally buoyant plume feed on benthic particulates and chemosynthetic microbes associated with the effluent. In this study, I explore how vent effluent affects pelagic organisms near the seafloor. The remotely operated vehicle JASON flew a 3.4 x 0.5 krn grid at 20 m above bottom over vent and non-vent areas on the Endeavour Segment, Juan de Fuca Ridge. My primary source of information for organism dispersion was visual: I distinguished organisms by form and motion in high resolution video. Environmental and navigational data collected every three seconds in conjunction with video data allowed organism dispersion to be linked with physical water characteristics. In addition, net tows taken over vent and non-vent areas on the Endeavour Segment, Axial Seamount and Explorer Ridge were used to characterize zooplankton assemblages above non-vent, diffuse vent and smoker vent sites within the axial valley. Multiple sampling methods are useful to identify benthopelagic assemblages accurately. -
Fine-Scale Planktonic Habitat Partitioning at a Shelf-Slope Front Revealed by a High-Resolution Imaging System
Fine-scale planktonic habitat partitioning at a shelf-slope front revealed by a high-resolution imaging system Greer, A. T., Cowen, R. K., Guigand, C. M., & Hare, J. A. (2015). Fine-scale planktonic habitat partitioning at a shelf-slope front revealed by a high-resolution imaging system. Journal of Marine Systems, 142, 111-125. doi:10.1016/j.jmarsys.2014.10.008 10.1016/j.jmarsys.2014.10.008 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Journal of Marine Systems 142 (2015) 111–125 Contents lists available at ScienceDirect Journal of Marine Systems journal homepage: www.elsevier.com/locate/jmarsys Fine-scale planktonic habitat partitioning at a shelf-slope front revealed by a high-resolution imaging system Adam T. Greer a,⁎, Robert K. Cowen b, Cedric M. Guigand c, Jonathan A. Hare d a College of Engineering, University of Georgia, Boyd Graduate Studies 708A, 200 D.W. Brooks Drive, Athens, GA 30602, United States b Hatfield Marine Science Center, Oregon State University, 2030 SE Marine Science Drive, Newport, OR 97365, United States c Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Cswy, Miami, FL 33149, United States d Northeast Fisheries Science Center, National Marine Fisheries Service, Narragansett Laboratory, 28 Tarzwell Drive, Narragansett, RI 02882, United States article info abstract Article history: Ocean fronts represent productive regions of the ocean, but predator–prey interactions within these features are Received 10 June 2014 poorly understood partially due to the coarse-scale and biases of net-based sampling methods. We used the In Received in revised form 30 September 2014 Situ Ichthyoplankton Imaging System (ISIIS) to sample across a front near the Georges Bank shelf edge on two Accepted 22 October 2014 separate sampling days in August 2010. -
Zooplankton Diel Vertical Migration During Antarctic Summer
Deep–Sea Research I 162 (2020) 103324 Contents lists available at ScienceDirect Deep-Sea Research Part I journal homepage: http://www.elsevier.com/locate/dsri Zooplankton diel vertical migration during Antarctic summer John A. Conroy a,*, Deborah K. Steinberg a, Patricia S. Thibodeau a,1, Oscar Schofield b a Virginia Institute of Marine Science, William & Mary, Gloucester Point, VA, 23062, USA b Center for Ocean Observing Leadership, Department of Marine and Coastal Sciences, School of Environmental and Biological Sciences, Rutgers University, New Brunswick, NJ, 08901, USA ARTICLE INFO ABSTRACT Keywords: Zooplankton diel vertical migration (DVM) during summer in the polar oceans is presumed to be dampened due Southern Ocean to near continuous daylight. We analyzed zooplankton diel vertical distribution patterns in a wide range of taxa Mesopelagic zone along the Western Antarctic Peninsula (WAP) to assess if DVM occurs, and if so, what environmental controls Copepod modulate DVM in the austral summer. Zooplankton were collected during January and February in paired day- Krill night, depth-stratifiedtows through the mesopelagic zone along the WAP from 2009-2017, as well as in day and Salp Pteropod night epipelagic net tows from 1993-2017. The copepod Metridia gerlachei, salp Salpa thompsoni, pteropod Limacina helicina antarctica, and ostracods consistently conducted DVM between the mesopelagic and epipelagic zones. Migration distance for M. gerlachei and ostracods decreased as photoperiod increased from 17 to 22 h daylight. The copepods Calanoides acutus and Rhincalanus gigas, as well as euphausiids Thysanoessa macrura and Euphausia crystallorophias, conducted shallow (mostly within the epipelagic zone) DVMs into the upper 50 m at night. -
Biological Oceanography (3 Credits) Class Number: 26773 Section: 1003 MWF Period 2 8:30Am-9:20Am Larsen Hall 0310
SYLLABUS: BSC4930 Special Topics in Biology: Biological Oceanography (3 credits) Class number: 26773 Section: 1003 MWF Period 2 8:30am-9:20am Larsen Hall 0310 INSTRUCTOR: Bryndan P. Durham (she/her) Office Hours: by appointment Office: Cancer and Genetics Research Complex Rm 404 Phone: (352) 294-6312 (office) Email: [email protected] COURSE DESCRIPTION: Biological oceanography is the study of marine organisms, their quantitative distributions in time and space, and their interactions with each other and their ocean environment. In this course, we cover the basics of biological, physical, and chemical dynamics in the oceans with a particular emphasis on life in different ocean environments. Specific topics include primary production by phytoplankton, secondary production by zooplankton, bacterial production and remineralization, distributions of pelagic and benthic organisms, and the energy and nutrient cycles driven by these organisms. In the final portion of the course, we explore the impacts of human perturbations and global climate change on ocean ecosystems and their inhabitants. Pre-requisites: BSC 2010, BSC2011, and BSC 2010L/2011L COURSE GOALS & STUDENT LEARNING OUTCOMES: Through reading, watching, and/or listening to assigned materials, attending in-class lectures, completing written and oral assignments, and participating in group discussions, you will gain experience toward the following broad university curricular goals: 1. The ability to think logically, analytically, and independently; 2. The ability to communicate clearly and effectively, both orally and in writing; and 3. The ability to learn on one’s own and as part of a group. More specific to topics in Biological Oceanography, you will achieve the following learning outcomes: 1. -
Zooplankton Diel Vertical Migration and Downward C Flux Into the Oxygen Minimum Zone in the Highly Productive Upwelling Region O
1 Zooplankton diel vertical migration and downward C flux into the 2 Oxygen Minimum Zone in the highly productive upwelling region off 3 Northern Chile 4 Pritha Tutasi1,3,4, Ruben Escribano2,3 5 1Doctoral Program of Oceanography, Universidad de Concepción, Chile 6 2Department of Oceanography and Instituto Milenio de Oceanografía (IMO), Facultad de Ciencias Naturales y 7 Oceanográficas, 3Universidad de Concepción, Concepción, P.O. Box 160 C, Chile 8 4Dirección Oceanografía Naval, Instituto Oceanográfico de la Armada (INOCAR), Guayaquil, Ecuador 9 Correspondence to: Pritha Tutasi ([email protected]) 10 Abstract. The daily vertical movement of zooplankton, known as diel vertical migration (DVM), can enhance the vertical 11 flux of carbon (C) and so contribute to the functioning of the biological pump in the ocean. The magnitude and efficiency of 12 this active transport of C may depend on the size and taxonomic structure of the migrant zooplankton. However, the impact 13 that a variable community structure can have on zooplankton-mediated downward C flux has not been properly addressed. 14 This taxonomic effect may become critically important in highly productive eastern boundary upwelling systems (EBUS), 15 where high levels of zooplankton biomass are found in the coastal zone and composed by a diverse community with variable 16 DVM behavior. In these systems, presence of a subsurface oxygen minimum zone (OMZ) can impose an additional 17 constraint to vertical migration and so influence the downward C export. Here, we address these issues based on a high- 18 resolution zooplankton sampling at three stations off northern Chile (20°S-30°S) during November-December 2015. -
Just Jelly (Adapted from the 2005 Hidden Ocean Expedition)
Hidden Ocean Expedition 2016: Chukchi Borderlands Just Jelly (adapted from the 2005 Hidden Ocean Expedition) Focus Gelatinous zooplankton in the Chukchi Borderlands Grade Level 9-12 (Life Science) Focus Question What are the common gelatinous zooplankton in the Chukchi Borderlands environment, and what are their ecological roles? Learning Objectives • Students compare and contrast the feeding strategies of at least three different types of gelatinous zooplankton. • Students explain why gelatinous zooplankton may function at several trophic levels within a marine food web. • Given information on the vertical distribution of temperature in a water column, students make inferences about potential influences on the distribution of planktonic species in the water column. Materials q Copies of Observations on Arctic Gelatinous Zooplankton and Analysis Guide for Observations on Arctic Gelatinous Zooplankton, one copy of each for each student Audio-Visual Materials None Teaching Time One or two 45-minute class periods, plus time for student analysis Seating Arrangement Classroom style Image captions/credits on Page 2. Maximum Number of Students 30 1 www.oceanexplorer.noaa.gov Just Jelly - Chukchi 2016 Grades9-12 (Life Science) Key Words Pelagic realm Benthic realm Sea ice realm Gelatinous zooplankton Cnidaria Ctenophora Chaetognatha Larvacea Arctic Ocean Chukchi Sea Background Information NOTE: Explanations and procedures in this lesson are written at a level appropriate to professional educators. In presenting and discussing this material with students, educators may need to adapt the language and instructional approach to styles that are best suited to specific student groups. The Arctic Ocean is the most inaccessible and poorly studied of all the Earth’s major oceans, and is the area that may experience the greatest impact from Bathymetry of Chukchi Borderlands with climate change. -
A Data Assimilative Marine Ecosystem Model of the Central Equatorial Pacific
Journalof MarineResearch, 59, 859– 894,2001 Adataassimilative marineecosystem modelof the central equatorialPaci c: Numerical twinexperiments byMarjorieA. M.Friedrichs 1 ABSTRACT Ave-component,data assimilative marine ecosystem model is developed for the high-nutrient low-chlorophyllregion of thecentral equatorial Paci c (0N,140W). Identical twin experiments, in whichmodel-generated synthetic ‘ data’are assimilated into the model, are employed to determine thefeasibility of improving simulation skill by assimilating in situ cruisedata (plankton, nutrients andprimary production) and remotely-sensed ocean color data. Simple data assimilative schemes suchas data insertion or nudging may be insuf cient for lower trophic level marine ecosystem models,since they require long time-series of daily to weekly plankton and nutrient data as wellas adequateknowledge of the governing ecosystem parameters. In contrast, the variational adjoint technique,which minimizes model-data mis ts byoptimizingtunable ecosystem parameters, holds muchpromise for assimilating biological data into marine ecosystem models. Using sampling strategiestypical of those employed during the U.S. JointGlobal Flux Study (JGOFS) equatorial Pacic processstudy and the remotely-sensed ocean color data available from the Sea-viewing Wide Field-of-viewSensor (SeaWiFS), parameters that characterize processes such as growth, grazing, mortality,and recycling can be estimated. Simulation skill is improved even if synthetic data associatedwith 40% random noise are assimilated; however, the presence of biases of 10 – 20% provesto be more detrimental to the assimilation results. Although increasing the length of the assimilatedtime series improves simulation skill if randomerrors are present in the data, simulation skillmay deterior ateas more biased data are assimilat ed.As biologic aldatasets, includin g in situ, satelliteand acoustic sources, continue to grow, data assimilat ivebiologic al-physical modelswill play an increasin glycrucial role in large interdis ciplinaryoceanogr aphicobserva- tionalprograms .