150 Years of Darwin's Theory of Intercellular Flow of Hereditary
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Metazoan Ribosome Inactivating Protein Encoding Genes Acquired by Horizontal Gene Transfer Received: 30 September 2016 Walter J
www.nature.com/scientificreports OPEN Metazoan Ribosome Inactivating Protein encoding genes acquired by Horizontal Gene Transfer Received: 30 September 2016 Walter J. Lapadula1, Paula L. Marcet2, María L. Mascotti1, M. Virginia Sanchez-Puerta3 & Accepted: 5 April 2017 Maximiliano Juri Ayub1 Published: xx xx xxxx Ribosome inactivating proteins (RIPs) are RNA N-glycosidases that depurinate a specific adenine residue in the conserved sarcin/ricin loop of 28S rRNA. These enzymes are widely distributed among plants and their presence has also been confirmed in several bacterial species. Recently, we reported for the first timein silico evidence of RIP encoding genes in metazoans, in two closely related species of insects: Aedes aegypti and Culex quinquefasciatus. Here, we have experimentally confirmed the presence of these genes in mosquitoes and attempted to unveil their evolutionary history. A detailed study was conducted, including evaluation of taxonomic distribution, phylogenetic inferences and microsynteny analyses, indicating that mosquito RIP genes derived from a single Horizontal Gene Transfer (HGT) event, probably from a cyanobacterial donor species. Moreover, evolutionary analyses show that, after the HGT event, these genes evolved under purifying selection, strongly suggesting they play functional roles in these organisms. Ribosome inactivating proteins (RIPs, EC 3.2.2.22) irreversibly modify ribosomes through the depurination of an adenine residue in the conserved alpha-sarcin/ricin loop of 28S rRNA1–4. This modification prevents the binding of elongation factor 2 to the ribosome, arresting protein synthesis5, 6. The occurrence of RIP genes has been exper- imentally confirmed in a wide range of plant taxa, as well as in several species of Gram positive and Gram negative bacteria7–9. -
Is the Germline Immortal and Continuous? a Discussion in Light of Ipscs and Germline Regeneration
Is the Germline Immortal and Continuous? A Discussion in Light of iPSCs and Germline Regeneration 1 1 Kate MacCord and B. Duygu Özpolat 1 - Marine Biological Laboratory, Woods Hole, MA, USA 1 ABSTRACT The germline gives rise to gametes, is the hereditary cell lineage, and is often called immortal and continuous. However, what exactly is immortal and continuous about the germline has recently come under scrutiny. The notion of an immortal and continuous germline has been around for over 130 years, and has led to the concept of a barrier between the germline and soma (the “Weismann barrier”). One repercussion of such a barrier is the understanding that when the germline is lost, soma cannot replace it, rendering the organism infertile. Recent research on induced pluripotent stem cells (iPSCs) and germline regeneration raise questions about the impermeability of the Weismann barrier and the designation of the germline as immortal and continuous. How we conceive of the germline and its immortality shapes what we perceive to be possible in animal biology, such as whether somatic cells contribute to the germline in some metazoans during normal development or regeneration. We argue that reassessing the universality of germline immortality and continuity across all metazoans leads to big and exciting open questions about the germ-soma cell distinction, cell reprogramming, germline editing, and even evolution. 2 1.0 Introduction The germline is the lineage of reproductive cells that includes gametes and their precursors, including primordial germ cells and germline stem cells. Because the germline gives rise to the gametes, it is the hereditary cell lineage, and is ultimately responsible for all cells in an organism’s body, including the next generation of the germline, stem cells, and other somatic cells. -
Reticulate Evolution Everywhere
Reticulate Evolution Everywhere Nathalie Gontier Abstract Reticulation is a recurring evolutionary pattern found in phylogenetic reconstructions of life. The pattern results from how species interact and evolve by mechanisms and processes including symbiosis; symbiogenesis; lateral gene transfer (that occurs via bacterial conjugation, transformation, transduction, Gene Transfer Agents, or the movements of transposons, retrotransposons, and other mobile genetic elements); hybridization or divergence with gene flow; and infec- tious heredity (induced either directly by bacteria, bacteriophages, viruses, pri- ons, protozoa and fungi, or via vectors that transmit these pathogens). Research on reticulate evolution today takes on inter- and transdisciplinary proportions and is able to unite distinct research fields ranging from microbiology and molecular genetics to evolutionary biology and the biomedical sciences. This chapter sum- marizes the main principles of the diverse reticulate evolutionary mechanisms and situates them into the chapters that make up this volume. Keywords Reticulate evolution · Symbiosis · Symbiogenesis · Lateral Gene Transfer · Infectious agents · Microbiome · Viriome · Virolution · Hybridization · Divergence with gene flow · Evolutionary patterns · Extended Synthesis 1 Reticulate Evolution: Patterns, Processes, Mechanisms According to the Online Etymology Dictionary (http://www.etymonline.com), the word reticulate is an adjective that stems from the Latin words “re¯ticulātus” (having a net-like pattern) and re¯ticulum (little net). When scholars identify the evolution of life as being “reticulated,” they first and foremost refer to a recurring evolutionary pattern. N. Gontier (*) AppEEL—Applied Evolutionary Epistemology Lab, University of Lisbon, Lisbon, Portugal e-mail: [email protected] © Springer International Publishing Switzerland 2015 1 N. Gontier (ed.), Reticulate Evolution, Interdisciplinary Evolution Research 3, DOI 10.1007/978-3-319-16345-1_1 2 N. -
Resources on Charles Darwin, Evolution, and the Galapagos Islands: a Selected Bibliography
Library and Information Services Division Current References 2009-1 The Year of Darwin 2009 Discovering Darwin at NOAA Central Library: Resources on Charles Darwin, Evolution, and the Galapagos Islands: A Selected Bibliography Prepared by Anna Fiolek and Kathleen A. Kelly U.S. Department of Commerce National Oceanic and Atmospheric Administration National Environmental Satellite, Data, and Information Service National Oceanographic Data Center NOAA Central Library October 2009 http://www.lib.noaa.gov/researchtools/subjectguides/darwinbib.pdf Contents: Preface …………………………………………………………………. p. 3 Acknowledgment ………………………………………………………. p. 4 I. Darwin Chronology ………………………………………………….. p. 5-6 II. Monographic Publications By or About Charles Darwin ………... p. 7-13 in the NOAA Central Library Network Catalog (NOAALINC) III. Internet Resources Related to Charles Darwin ……. ……………. p. 14-17 And His Science (Including online images and videos) IV. Darwin Science-related Journals in the NOAA Libraries’………. p. 17-18 Network 2 Preface This Bibliography has been prepared to support NOAA Central Library (NCL) outreach activities during the Year of Darwin 2009, including a “Discovering Darwin at NOAA Central Library” Exhibit. The Year of Darwin 2009 has been observed worldwide by libraries, museums, academic institutions and scientific publishers, to honor the 150th anniversary of On the Origin of Species and the 200th anniversary of Charles Darwin’s birth. This Bibliography reflects the library’s unique print and online resources on Charles Darwin, Evolution, and the Galapagos Islands. It includes citations organized “by title” from NOAALINC, the library’s online catalog, and from the library’s historical collections. The data and listings are comprehensive from the 19th century to the present. The formats represented in this resource include printed monographs, serial publications, graphical materials, videos, online full-text documents, a related journal list, and Web resources. -
The Lamarckian Chicken and the Darwinian Egg Yitzhak Pilpel1* and Oded Rechavi2*
Pilpel and Rechavi Biology Direct (2015) 10:34 DOI 10.1186/s13062-015-0062-9 COMMENT Open Access The Lamarckian chicken and the Darwinian egg Yitzhak Pilpel1* and Oded Rechavi2* Abstract: “Which came first, the Chicken or the Egg?” We suggest this question is not a paradox. The Modern Synthesis envisions speciation through genetic changes in germ cells via random mutations, an “Egg first” scenario, but perhaps epigenetic inheritance mechanisms can transmit adaptive changes initiated in the soma (“Chicken first”). Reviewers: The article was reviewed by Dr. Eugene Koonin, Dr. Itai Yanai, Dr. Laura Landweber. Keywords: Evolution, Darwinian Evolution, Lamarckian Evolution, Modern Synthesis, Weismann Barrier, Epigenetic Inheritance, Transgenerational RNA Interference Background solution. Nevertheless, it is important to discuss why this In this commentary paper we wish to use the well- question is perceived as being paradoxical, and to exam- known “Chicken and Egg” paradox as a gateway for ine the true mystery that it holds; at the base of this discussing different processes of evolution. While in the dilemma stands an extremely important and unsolved biological sense this is not a paradox at all, the metaphor biological question: “Can the phenotype affect the is still useful because it allows examining of the distinc- genotype”? or put differently, “Can epigenetics translate tion between Lamarckian and Darwinian evolution, and into genetics”? specifically, since it enables us to raise an important and Asking the question in this manner allows mapping of unsolved question: “Can the phenotype affect the geno- the “Egg first” vs. the “Chicken first” options onto the type?” or in other words, “can epigenetics translate into distinction between Darwinian and Lamarckian evolu- genetics”? tion. -
Evolution, Development, and the Units of Selection (Epigenesis/Modern Synthesis/Preformation/Somatic Embryogenesis/Weismann's Doctrine) LEO W
Proc. Nat. Acad. Sci. USA Vol. 80, pp. 1387-1391, March 1983 Evolution Evolution, development, and the units of selection (epigenesis/Modern Synthesis/preformation/somatic embryogenesis/Weismann's doctrine) LEO W. Buss Department of Biology and Peabody Museum of Natural History, Yale University, New Haven, Connecticut 06511 Communicated by G, Evelyn Hutchinson, December 17, 1982 ABSTRACT The "Modern Synthesis" forms the foundation of those working with the comparative embryology of vertebrates, current evolutionary theory. It is based on variation among indi- saw strong evidence for Weismann's scheme in the sequestering viduals within populations. Variations within individuals are be- of germ cells during early embryology. Finally, several inves- lieved to hold no phylogenetic significance because such variation tigators studying wound-healing had clearly illustrated that many cannot be transmitted to the germ line (i.e., Weismann's doctrine). somatic cells were, in fact, incapable of regeneration. Weismann's doctrine, however, does not apply to protists, fungi, Support for Weismann's doctrine was by no means universal. or plants and is an entirely unsupported assumption for 19 phyla Botanists were Weismann's earliest critics (5). Debate over the of animals. This fact requires that the Modern Synthesis be reex- issue was central in the development of the continuing rift be- amined and modified. tween botanists and zoologists despite the commonality of their interests (G. E. Hutchinson, personal communication). Al- The Darwinian notion of evolution as a process directed by se- though Weismann's doctrine was the subject of two very critical lection acting upon heritable variation has not been challenged reviews in the 20th century (6, 7), these criticisms fell on deaf seriously since Darwin first articulated it. -
Induction of Mitochondrial DNA Heteroplasmy by Intra- and Interspecific Transplantation of Germ Plasm in Drosophila
Copyright 0 1989 by the Genetics Society of America Induction of Mitochondrial DNA Heteroplasmy by Intra- and Interspecific Transplantation of Germ Plasm in Drosophila Etsuko T. Matsuura,* SadaoI. Chigusa* and Yuzo Niki? *Department of Biology, Ochanomiru University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112, Japanand tDepartment $Biology, Ibaraki University, 2-1-1 Bunkyo, Mito-shi, Ibaraki 310, Japan Manuscript received January 17, 1989 Accepted for publication April 3, 1989 ABSTRACT A new experimental system for inducing mitochondrial DNA heteroplasmy in Drosophila was developed. By transplanting the germ plasm of Drosophila melanogaster and Drosophila mauritiana into the posterior pole of the recipient eggs of D. melanogaster, it was possible to introduce foreign mitochondria into the recipient female germline. Heteroplasmic individuals containing both donor and recipient mtDNA were obtained in intra- and interspecific combinations at similar frequencies. The proportion of donor-derived mtDNA in the heteroplasmic individuals varied considerably from individual to individual irrespectiveof the donor species used. No significant decreasein or elimination of donor mtDNA was observed, andthe heteroplasmic statein female germlines persisted for several generations. The present system should serve very much to promote the study and clarification of the transmission gkneticsof mtDNA in insects. HE geneticsof metazoan mitochondrial DNA germ plasm. The germline ofDrosophila is segregated T (mtDNA) is unique in that apopulation of fromother somatic lines at very earlyembryonic mtDNA molecules is maternallyinherited. Lack of stages through thefunction of germ plasm (ILLMENSEE appropriate genetic markers of mitochondria within and MAHOWALD1974; NIKI 1986). Germ plasm is not an individual makes difficult elucidation of the man- species-specific for inducingfunctional germ cells ner in which mitochondria or mtDNA are transmit- (MAHOWALD,ILLMENSEE and TURNER1976) andcon- ted. -
Origins of the Myth of Social Darwinism: the Ambiguous Legacy of Richard Hofstadter’S Social Darwinism in American Thought
Journal of Economic Behavior & Organization 71 (2009) 37–51 Contents lists available at ScienceDirect Journal of Economic Behavior & Organization journal homepage: www.elsevier.com/locate/jebo Origins of the myth of social Darwinism: The ambiguous legacy of Richard Hofstadter’s Social Darwinism in American Thought Thomas C. Leonard Department of Economics, Princeton University, Fisher Hall, Princeton, NJ 08544, United States article info abstract Article history: The term “social Darwinism” owes its currency and many of its connotations to Richard Received 19 February 2007 Hofstadter’s influential Social Darwinism in American Thought, 1860–1915 (SDAT). The post- Accepted 8 November 2007 SDAT meanings of “social Darwinism” are the product of an unresolved Whiggish tension in Available online 6 March 2009 SDAT: Hofstadter championed economic reform over free markets, but he also condemned biology in social science, this while many progressive social scientists surveyed in SDAT JEL classification: offered biological justifications for economic reform. As a consequence, there are, in effect, B15 B31 two Hofstadters in SDAT. The first (call him Hofstadter1) disparaged as “social Darwinism” B12 biological justification of laissez-faire, for this was, in his view, doubly wrong. The sec- ond Hofstadter (call him Hofstadter2) documented, however incompletely, the underside Keywords: of progressive reform: racism, eugenics and imperialism, and even devised a term for it, Social Darwinism “Darwinian collectivism.” This essay documents and explains Hofstadter’s ambivalence in Evolution SDAT, especially where, as with Progressive Era eugenics, the “two Hofstadters” were at odds Progressive Era economics Malthus with each other. It explores the historiographic and semantic consequences of Hofstadter’s ambivalence, including its connection with the Left’s longstanding mistrust of Darwinism as apology for Malthusian political economy. -
Molecular Lamarckism: on the Evolution of Human Intelligence
World Futures The Journal of New Paradigm Research ISSN: 0260-4027 (Print) 1556-1844 (Online) Journal homepage: https://www.tandfonline.com/loi/gwof20 Molecular Lamarckism: On the Evolution of Human Intelligence Fredric M. Menger To cite this article: Fredric M. Menger (2017) Molecular Lamarckism: On the Evolution of Human Intelligence, World Futures, 73:2, 89-103, DOI: 10.1080/02604027.2017.1319669 To link to this article: https://doi.org/10.1080/02604027.2017.1319669 © 2017 The Author(s). Published with license by Taylor & Francis Group, LLC© Fredric M. Menger Published online: 26 May 2017. Submit your article to this journal Article views: 3145 View related articles View Crossmark data Citing articles: 1 View citing articles Full Terms & Conditions of access and use can be found at https://www.tandfonline.com/action/journalInformation?journalCode=gwof20 World Futures, 73: 89–103, 2017 Copyright © Fredric M. Menger ISSN: 0260-4027 print / 1556-1844 online DOI: 10.1080/02604027.2017.1319669 MOLECULAR LAMARCKISM: ON THE EVOLUTION OF HUMAN INTELLIGENCE Fredric M. Menger Emory University, Atlanta, Georgia, USA In modern times, Lamarck’s view of evolution, based on inheritance of acquired traits has been superseded by neo-Darwinism, based on random DNA mutations. This article begins with a series of observations suggesting that Lamarckian inheritance is in fact operative throughout Nature. I then launch into a discussion of human intelligence that is the most important feature of human evolution that cannot be easily explained by mutational -
Primordial Germ Cells
Determination of Germ Cells The Germ Line • Early separation of “germ line” from regular somatic cells in many but not all animals – Early specification of primordial germ cells (PGCs) – Later migration into developing somatic gonad • In gonadal environment, gametogenesis – Meiosis – Sperm/egg differentiation • Germ cell determination can either be – Autonomous – Specified by neighbors Segregation of Germ Plasm of Parascaris • Theodor Boveri (1862-1915) – Nematode of horse and pig intestines – Observed the two chromosomes through cell divisions, through gametogenesis, through development – Chromosome parts loss correlated to special cytoplasm Does a Specific Region of Cytoplasm Protect the Chromosomes from Diminution? • Centrifugation to reorient the first cleavage plane relative to the vegetal cytoplasm centrifuged: Consequences • Only in germ line is all chromosomal information retained • Concept of stem cells – Cells that give rise to one the same and one different Early Segregation of Cytoplasmic Factors Defines PGCs • Segregation of P granules in C. elegans embryo follows PGC lineage • Contain RNA binding proteins and transcription inhibitors germ cell precursor Drosophila Pole Plasm • Pole cells (=PGCs) are the first nuclei to migrate out to periphery and cellularize • Surrounded by pole plasm – mitochondria, fibrils, polar granules, polysomes, etc. – plasm similar in other organisms How do We Know Pole Plasm Specifies the Germline? • Experiments demonstrated importance of pole plasm for generating germline – Hegner (1911) removed -
Metazoan Ribotoxin Genes Acquired by Horizontal Gene Transfer
bioRxiv preprint doi: https://doi.org/10.1101/071340; this version posted August 26, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Metazoan ribotoxin genes acquired by Horizontal Gene Transfer Walter J. Lapadula1*, Paula L. Marcet2, María L. Mascotti1, María V. Sánchez Puerta3, Maximiliano Juri Ayub1* 1. Instituto Multidisciplinario de Investigaciones Biológicas de San Luis, IMIBIO-SL-CONICET and Facultad de Química, Bioquímica y Farmacia, Universidad Nacional de San Luis, San Luis Argentina. 2. Centers for Disease Control and Prevention, Division of Parasitic Diseases and Malaria, Atlanta, USA. 3. Instituto de Ciencias Básicas, IBAM-CONICET and Facultad de Ciencias Agrarias, Universidad Nacional de Cuyo, Mendoza, Argentina. *Corresponding authors: [email protected], [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/071340; this version posted August 26, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract Ribosome inactivating proteins (RIPs) are RNA N-glycosidases that depurinate a specific adenine residue in the conserved sarcin/ricin loop of 28S rRNA. These enzymes are widely distributed among plants and their presence has also been confirmed in several bacterial species. Recently, we reported for the first time in silico evidence of RIP encoding genes in metazoans, in two closely related species of insects: Aedes aegypti and Culex quinquefasciatus. -
Darwin Final to CLAYS-C.Indd
Darwin’s Most Wonderful Plants Darwin’s Most Wonderful Plants DARWIN’S BOTANY TODAY KEN THOMPSON First published in Great Britain in 2018 by Profile Books 3 Holford Yard, Bevin Way London WC1X 9HD www.profilebooks.com 1 3 5 7 9 10 8 6 4 2 Typeset in Bembo to a design by Henry Iles. Copyright © Ken Thompson 2018 The moral right of the author has been asserted. All rights reserved. Without limiting the rights under copyright reserved above, no part of this publication may be reproduced, stored or introduced into a retrieval system, or transmitted, in any form or by any means (electronic, mechanical, photocopying, recording or otherwise), without the prior written permission of both the copyright owner and the publisher of this book. A CIP catalogue record for this book is available from the British Library. ISBN 978-1788160285 e-ISBN 978-1782834366 Printed and bound in Great Britain by Clays, Bungay, Suffolk on Forest Stewardship Council (mixed sources) certified paper. CONTENTS Introduction The Secrets of Plants .................................................. 7 Chapter 1 Room at the Top ............................................................ 23 On the movements and habits of climbing plants (1865) Chapter 2 Slow Learners .................................................................... 69 The power of movement in plants (1880) Chapter 3 The Biter Bit ................................................................... 103 Insectivorous plants (1875) Chapter 4 Sex and the Single Plant ...................................... 156 On the various contrivances by which British and foreign orchids are fertilised by insects, and on the good effects of intercrossing (1862) The effects of cross and self-fertilisation in the vegetable kingdom (1876) The different forms of flowers on plants of the same species (1877) Chapter 5 The Mysteries of the Cabbage Patch ........