Life-History Evolution and the Origin of Multicellularity
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
AP Biology Planner
COURSE PLANNER Please note that not all activities for the course are listed, and many activities will be supplemented with additional activities such as diagram analysis, practice essays, etc. Intro to AP Biology/Scientific Method This course begins with introducing students to the seven science practices, in addition to the Big Ideas that unify the course. Students complete the lab exercises that emphasize the need for controls in experiments as well as to identify and explain potential sources of error as part of the normal scientific process. Reading in Campbell and Reece: Topics: • Intro to AP biology, the test and how to study. ♣ Activity: Theme-teams: Students research and present scientist who represent each Big Idea in AP Biology. ♣ Activity: Analyzing the AP multiple choice questions with diagrams. • Scientific Method: Steps and controlled experiments ♣ Activity: What is Science? Discussion/Poster Creation. ♣ Activity: Lab Safety activity: NIH’s Student Lab Safety Introduction Course. https://www.safetytraining.nih.gov/introcourse/labsafetyIntro.aspx ♣ Activity: Identify risks in procedures and materials (MSDS analysis) ♣ Activity: Guide to good graphing. ♣ Activity: Examining bias in science. ♣ Lab: Student Designed inquiry. The effect of environmental factors on the metabolic rate of yeast. In this student designed inquiry, students investigate environmental factors as they relate to CO2 production or O2 consumption in yeast. Students must select an independent variable and dependent variable, as well as design an experimental procedure based on an existing lab protocol. ECOLOGY The ecology unit introduces the ideas of energy processes and interactions, which are the focus of Big Idea 2 and 4. Ecology introduces students to creating, analyzing, and evaluating mathematical models in biology and prepares students to tackle evolution, the central unit in AP Biology. -
Two Independent Retrons with Highly Diverse Reverse Transcriptases In
Proc. Natl. Acad. Sci. USA Vol. 87, pp. 942-945, February 1990 Biochemistry Two independent retrons with highly diverse reverse transcriptases in Myxococcus xanthus (multicopy single-stranded DNA/2',5'-phosphodiester/codon usage/myxobacteria) SUMIKO INOUYE, PETER J. HERZER, AND MASAYORI INOUYE Department of Biochemistry, University of Medicine and Dentistry of New Jersey, Robert Wood Johnson Medical School, Piscataway, NJ 08854 Communicated by Russell F. Doolittle, November 27, 1989 (received for review September 29, 1989) ABSTRACT A reverse transcriptase (RT) was recently found that the Mx65 retron is highly diverse and independent found in Myxococcus xanthus, a Gram-negative soil bacterium. from the Mx162 retron and that RT associated with the Mx65 This RT has been shown to be associated with a chromosomal retron has only 47% identity with RT for the Mx162 retron. region designated a retron responsible for the synthesis of a peculiar extrachromosomal DNA called msDNA (multicopy single-stranded DNA). We demonstrate that M. xanthus con- MATERIALS AND METHODS tains two independent, unlinked retrons, one for the synthesis Materials. The clone of the 9.0-kilobase (kb) Pst I fragment of msDNA-Mxl62 and the other for msDNA-Mx65. The struc- containing the Mx65 retron was obtained (8). Restriction tural analysis of the retron for msDNA-Mx65 revealed that the enzymes were purchased from New England Biolabs and coding regions for msdRNA (msr) and msDNA (msd), and an Boehringer Mannheim. open reading frame (ORF) downstream of msr are arranged in A deletion mutant strain ofthe Mx162 retron, AmsSX, was the same manner as found for the Mx162 retron. -
Isolation, Antimicrobial Activity of Myxobacterial Crude Extracts and Identification of the Most Potent Strains
Arch Biol Sci. 2017;69(3):561-568 https://doi.org/10.2298/ABS161011132C Isolation, antimicrobial activity of myxobacterial crude extracts and identification of the most potent strains Ivana Charousová*, Juraj Medo and Soňa Javoreková Department of Microbiology, Faculty of Biotechnology and Food Sciences, Slovak University of Agriculture in Nitra, Tr. A. Hlinku 2, 949 76 Nitra, Slovakia *Corresponding author: [email protected] Received: October 11, 2016; Revised: November 14, 2016; Accepted: November 18, 2016; Published online: December 14, 2016 Abstract: Broad spectrum antimicrobial agents are urgently needed to fight frequently occurring multidrug-resistant pathogens. Myxobacteria have been regarded as “microbe factories” for active secondary metabolites, and therefore, this study was performed to isolate two bacteriolytic genera of myxobacteria, Myxococcus sp. and Corallococcus sp., from 10 soil/sand samples using two conventional methods followed by purification with the aim of determining the antimicrobial activity of methanol extracts against 11 test microorganisms (four Gram-positive, four Gram-negative, two yeasts and one fungus). Out of thirty-nine directly observed strains, 23 were purified and analyzed for antimicrobial activities. Based on the broth microdilution method, a total of 19 crude extracts showed antimicrobial activity. The range of inhibited wells was more important in the case of anti-Gram-positive-bacterial activity in comparison with the anti-Gram-negative-bacterial and antifungal activity. In light of the established degree and range of antimicrobial activity, two of the most active isolates (BNEM1 and SFEC2) were selected for further characterization. Morphological parameters and a sequence similarity search by BLAST revealed that they showed 99% sequence similarity to Myxococcus xanthus − BNEM1 (accession no. -
Evolutionary Developmental Biology 573
EVOC20 29/08/2003 11:15 AM Page 572 Evolutionary 20 Developmental Biology volutionary developmental biology, now often known Eas “evo-devo,” is the study of the relation between evolution and development. The relation between evolution and development has been the subject of research for many years, and the chapter begins by looking at some classic ideas. However, the subject has been transformed in recent years as the genes that control development have begun to be identified. This chapter looks at how changes in these developmental genes, such as changes in their spatial or temporal expression in the embryo, are associated with changes in adult morphology. The origin of a set of genes controlling development may have opened up new and more flexible ways in which evolution could occur: life may have become more “evolvable.” EVOC20 29/08/2003 11:15 AM Page 573 CHAPTER 20 / Evolutionary Developmental Biology 573 20.1 Changes in development, and the genes controlling development, underlie morphological evolution Morphological structures, such as heads, legs, and tails, are produced in each individual organism by development. The organism begins life as a single cell. The organism grows by cell division, and the various cell types (bone cells, skin cells, and so on) are produced by differentiation within dividing cell lines. When one species evolves into Morphological evolution is driven another, with a changed morphological form, the developmental process must have by developmental evolution changed too. If the descendant species has longer legs, it is because the developmental process that produces legs has been accelerated, or extended over time. -
723874V1.Full.Pdf
bioRxiv preprint doi: https://doi.org/10.1101/723874; this version posted August 5, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Discovery of a polybrominated aromatic 2 secondary metabolite from a planctomycete 3 points at an ambivalent interaction with its 4 macroalgae host 5 6 7 8 9 10 11 Fabian Panter[a,b], Ronald Garcia[a,b], Angela Thewes[a,b], Nestor Zaburannyi [a,b], Boyke Bunk [b,c], Jörg 12 Overmann[b,c], Mary Victory Gutierrez [d], Daniel Krug[a,b] and Rolf Müller*[a,b] 13 14 15 * Corresponding author, rolf.mü[email protected] 16 17 18 19 20 [a] Department of Microbial Natural Products, Helmholtz-Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz 21 Centre for Infection Research (HZI) and Department of Pharmacy, Saarland University, Campus E8 1, 66123 Saarbrücken, 22 Germany 23 [b] German Centre for Infection Research (DZIF), Partner Site Hannover–Braunschweig, Germany 24 [c] Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 3814 Braunschweig, 25 Germany 26 [d] Biology Department, Far Eastern University, Nicanor Reyes St., Sampaloc, Manila, 1008 Metro Manila, Philippines 27 28 29 30 31 1 bioRxiv preprint doi: https://doi.org/10.1101/723874; this version posted August 5, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Novel Myxobacteria As a Potential Source of Natural Products and Description of Inter-Species Nature of C-Signal
Novel myxobacteria as a potential source of natural products and description of inter-species nature of C-signal Dissertation zur Erlangung des Grades des Doktors der Naturwissenschaften der Naturwissenschaftlich-Technischen Fakultät III Chemie, Pharmazie, Bio- und Werkstoffwissenschaften der Universität des Saarlandes von Ram Prasad Awal (M. Sc. in Medical Microbiology) Saarbrücken 2016 Tag des Kolloquiums: ......19.12.2016....................................... Dekan: ......Prof. Dr. Guido Kickelbick.............. Berichterstatter: ......Prof. Dr. Rolf Müller...................... ......Prof. Dr. Manfred J. Schmitt........... ............................................................... Vositz: ......Prof. Dr. Uli Kazmaier..................... Akad. Mitarbeiter: ......Dr. Jessica Stolzenberger.................. iii Diese Arbeit entstand unter der Anleitung von Prof. Dr. Rolf Müller in der Fachrichtung 8.2, Pharmazeutische Biotechnologie der Naturwissenschaftlich-Technischen Fakultät III der Universität des Saarlandes von Oktober 2012 bis September 2016. iv Acknowledgement Above all, I would like to express my special appreciation and thanks to my advisor Professor Dr. Rolf Müller. It has been an honor to be his Ph.D. student and work in his esteemed laboratory. I appreciate for his supervision, inspiration and for allowing me to grow as a research scientist. Your guidance on both research as well as on my career have been invaluable. I would also like to thank Professor Dr. Manfred J. Schmitt for his scientific support and suggestions to my research work. I am thankful for my funding sources that made my Ph.D. work possible. I was funded by Deutscher Akademischer Austauschdienst (DAAD) for 3 and half years and later on by Helmholtz-Institute. Many thanks to my co-advisors: Dr. Carsten Volz, who supported and guided me through the challenging research and Dr. Ronald Garcia for introducing me to the wonderful world of myxobacteria. -
Enforcement Is Central to the Evolution of Cooperation
REVIEW ARTICLE https://doi.org/10.1038/s41559-019-0907-1 Enforcement is central to the evolution of cooperation J. Arvid Ågren1,2,6, Nicholas G. Davies 3,6 and Kevin R. Foster 4,5* Cooperation occurs at all levels of life, from genomes, complex cells and multicellular organisms to societies and mutualisms between species. A major question for evolutionary biology is what these diverse systems have in common. Here, we review the full breadth of cooperative systems and find that they frequently rely on enforcement mechanisms that suppress selfish behaviour. We discuss many examples, including the suppression of transposable elements, uniparental inheritance of mito- chondria and plastids, anti-cancer mechanisms, reciprocation and punishment in humans and other vertebrates, policing in eusocial insects and partner choice in mutualisms between species. To address a lack of accompanying theory, we develop a series of evolutionary models that show that the enforcement of cooperation is widely predicted. We argue that enforcement is an underappreciated, and often critical, ingredient for cooperation across all scales of biological organization. he evolution of cooperation is central to all living systems. A major open question, then, is what, if anything, unites the Evolutionary history can be defined by a series of major tran- evolution of cooperative systems? Here, we review cooperative evo- Tsitions (Box 1) in which replicating units came together, lost lution across all levels of biological organization, which reveals a their independence and formed new levels of biological organiza- growing amount of evidence for the importance of enforcement. tion1–4. As a consequence, life is organized in a hierarchy of coop- By enforcement, we mean an action that evolves, at least in part, to eration: genes work together in genomes, genomes in cells, cells in reduce selfish behaviour within a cooperative alliance (see Box 2 for multicellular organisms and multicellular organisms in eusocial the formal definition). -
Perspectives
Copvright 0 1999 bv the Genetics Society of Anlerica Perspectives Anecdotal, Historical and Critical Commentaries on Genetics Edited by James F. Crow and William F. Dove ROLANDTHAXTER’S Legacy and the Origins of Multicellular Development Dale Kaiser Departments of Biochemistry and of Developmental Biology, Stanford University, Stanford, Calijornia 94305 OLAND THAXTER published a bombshell in R December,1892. He reported that Chondro- myces crocatus, before then considered an imperfect fungus because of its complex fruiting bodv, was ac- tually a bacterium (Figure 1). THAXTERhad discov- ered theunicellular vegetative stage of C. crocatus; the cells he found were relatively short and they divided by binary fission. C. crocatus was, heconcluded, a “communal bacterium.” THAXTERdescribed the lo- comotion, swarming, aggregation and process of fruit- ing body formation of C. crocatus and its relatives, which are collectively called myxobacteria, with an accuracy that has survived 100 years of scrutiny. He recognized the behavioral similarity to the myxomv- cetes and the cellular slime molds, drawing attention in all three to the transition from single cells to an integrated multicellular state. He described the be- havior of myxobacteria in fructification in terms of a “course of development” because it was “a definitely recurring aggregation of individuals capable of con- certed action toward a definiteend” (THAXI‘ER1892). This essay will emphasize some implications of THAX- TER’S demonstrations, often apparently unrecognized. The striking similarities to cellular slime mold de- velopment probably led JOHN TYLERBONNER and KENNETHB. RAPER,50 years after THAXTER’Sdiscov- ery, to take independent forays into myxobacterial development. RAPER,an eminent mycologist, had in FIGURE1 .“Chondromyces crocatus fruiting bodv. -
The Vital Question Why Is Life the Way It Is?
The Vital Question Why is life the way it is? Introduction Nick Lane Biochemist and writer About Dr Nick Lane is a British biochemist and writer. He was awarded the first Provost’s Venture Research Prize in the Department of Genetics, Evolution and Environment at University College London, where he is now a Reader in Evolutionary Biochemistry. Dr Lane’s research deals with evolutionary biochemistry and bioenergetics, focusing on the origin of life and the evolution of complex cells. Dr Lane was a founding member of the UCL Consortium for Mitochondrial Research, and is leading the UCL Research Frontiers Origins of Life programme. He was awarded the 2011 BMC Research Award for Genetics, Genomics, Bioinformatics and Evolution, and the 2015 Biochemical Society Award for his sustained and diverse contribution to the molecular life sciences and the public understanding of science. The Vital Question Why is life the way it is? Introduction There is a black hole at the heart of biology. Bluntly put, we do not know why life is the way it is. All complex life on earth shares a common ancestor, a cell that arose from simple bacterial progenitors on just one occasion in 4 billion years. Was this a freak accident, or did other ‘experiments’ in the evolution of complexity fail? We don’t know. We do know that this common ancestor was already a very complex cell. It had more or less the same sophistication as one of your cells, and it passed this great complexity on not just to you and me but to all its descendants, from trees to bees. -
A Quantitative Assay to Study Cell Movement in the Myxobacteria
jf. Cell Sci. 25, 173-178 (i977) 173 Printed in Great Britain A QUANTITATIVE ASSAY TO STUDY CELL MOVEMENT IN THE MYXOBACTERIA JOSEPH LONSKI, RONALD HEROMIN AND DAVID INGRAHAM Department of Biology, Bucknell University, Lezvisburg, Pennsylvania, U.S.A. SUMMARY A simple quantitative assay has been developed to test the rate of cell movement of myxo- bacteria. The assay employs an agar surface and at no time are the cells cultured in a liquid environment. Isolation of a rate-increasing substance(s) from fruiting Myxococcus xartthus is reported. The understanding of the aggregative process in these bacteria will be aided by characterization of the chemotactic system. INTRODUCTION The myxobacteria represent a unique group of procaryotes which interact with each other throughout their life cycle. These interactions play a role both in the swarming and feeding process, as well as in fruiting body formation. The general properties of the myxobacteria have been reviewed several times (Dworkin, 1966; 1972). A distinctive feature of the myxobacteria is that when cells on the surface of a solid medium are deprived of specific nutrients, they shift from growth to development and begin to migrate, by means of a gliding motility, into aggregation centres (Dworkin, 1963). A number of investigations (Lev, 1954; Jennings, 1961; McVittie & Zahler, 1962; Fleugel, 1963) have suggested that this aggregation is in response to a chemo- tactic substance but this has not yet been carefully examined. Having aggregated, the cells then construct a macroscopic fruiting body. For Myxococcus xanthus this is a simple mound of myxospores encased in a slime sheath. This research was initiated to aid in the search for the mechanism of aggregation of these procaryotes. -
The Soil Microbial Food Web Revisited: Predatory Myxobacteria As Keystone Taxa?
The ISME Journal https://doi.org/10.1038/s41396-021-00958-2 ARTICLE The soil microbial food web revisited: Predatory myxobacteria as keystone taxa? 1 1 1,2 1 1 Sebastian Petters ● Verena Groß ● Andrea Söllinger ● Michelle Pichler ● Anne Reinhard ● 1 1 Mia Maria Bengtsson ● Tim Urich Received: 4 October 2018 / Revised: 24 February 2021 / Accepted: 4 March 2021 © The Author(s) 2021. This article is published with open access Abstract Trophic interactions are crucial for carbon cycling in food webs. Traditionally, eukaryotic micropredators are considered the major micropredators of bacteria in soils, although bacteria like myxobacteria and Bdellovibrio are also known bacterivores. Until recently, it was impossible to assess the abundance of prokaryotes and eukaryotes in soil food webs simultaneously. Using metatranscriptomic three-domain community profiling we identified pro- and eukaryotic micropredators in 11 European mineral and organic soils from different climes. Myxobacteria comprised 1.5–9.7% of all obtained SSU rRNA transcripts and more than 60% of all identified potential bacterivores in most soils. The name-giving and well-characterized fi 1234567890();,: 1234567890();,: predatory bacteria af liated with the Myxococcaceae were barely present, while Haliangiaceae and Polyangiaceae dominated. In predation assays, representatives of the latter showed prey spectra as broad as the Myxococcaceae. 18S rRNA transcripts from eukaryotic micropredators, like amoeba and nematodes, were generally less abundant than myxobacterial 16S rRNA transcripts, especially in mineral soils. Although SSU rRNA does not directly reflect organismic abundance, our findings indicate that myxobacteria could be keystone taxa in the soil microbial food web, with potential impact on prokaryotic community composition. -
Modelling the Order of Driver Mutations and Metabolic Mutations As Structures in Cancer Dynamics
Modelling the order of driver mutations and metabolic mutations as structures in cancer dynamics Gianluca Ascolani1 and Pietro Li´o1 1 Computer Laboratory, University of Cambridge, UK E-mail: [email protected] and [email protected] PACS numbers: 87.10.-e, 87.10.Mn, 87.10.Vg, 87.17.-d, 87.17.Aa, 87.17.Ee, 87.18.Wd, 87.19.xj, Abstract. Recent works have stressed the important role that random mutations have in the development of cancer phenotype. We challenge this current view by means of bioinformatic data analysis and computational modelling approaches. Not all the mutations are equally important for the development of metastasis. The survival of cancer cells from the primary tumour site to the secondary seeding sites depends on the occurrence of very few driver mutations promoting oncogenic cell behaviours and on the order with which these mutations occur. We introduce a model in the framework of Cellular Automata to investigate the effects of metabolic mutations and mutation order on cancer stemness and tumour cell migration in bone metastasised breast cancers. The metabolism of the cancer cell is a key factor in its proliferation rate. Bioinformatics analysis on a cancer mutation database shows that metabolism- modifying alterations constitute an important class of key cancer mutations. Our approach models three types of mutations: drivers, the order of which is relevant for the dynamics, metabolic which support cancer growth and are estimated from existing databases, and non{driver mutations. Our results provide a quantitative basis of how the order of driver mutations and the metabolic mutations in different cancer clones could impact proliferation of therapy-resistant clonal populations and patient survival.