Absolute Chemical Structure of the Myxobacterial Pheromone Of
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Two Independent Retrons with Highly Diverse Reverse Transcriptases In
Proc. Natl. Acad. Sci. USA Vol. 87, pp. 942-945, February 1990 Biochemistry Two independent retrons with highly diverse reverse transcriptases in Myxococcus xanthus (multicopy single-stranded DNA/2',5'-phosphodiester/codon usage/myxobacteria) SUMIKO INOUYE, PETER J. HERZER, AND MASAYORI INOUYE Department of Biochemistry, University of Medicine and Dentistry of New Jersey, Robert Wood Johnson Medical School, Piscataway, NJ 08854 Communicated by Russell F. Doolittle, November 27, 1989 (received for review September 29, 1989) ABSTRACT A reverse transcriptase (RT) was recently found that the Mx65 retron is highly diverse and independent found in Myxococcus xanthus, a Gram-negative soil bacterium. from the Mx162 retron and that RT associated with the Mx65 This RT has been shown to be associated with a chromosomal retron has only 47% identity with RT for the Mx162 retron. region designated a retron responsible for the synthesis of a peculiar extrachromosomal DNA called msDNA (multicopy single-stranded DNA). We demonstrate that M. xanthus con- MATERIALS AND METHODS tains two independent, unlinked retrons, one for the synthesis Materials. The clone of the 9.0-kilobase (kb) Pst I fragment of msDNA-Mxl62 and the other for msDNA-Mx65. The struc- containing the Mx65 retron was obtained (8). Restriction tural analysis of the retron for msDNA-Mx65 revealed that the enzymes were purchased from New England Biolabs and coding regions for msdRNA (msr) and msDNA (msd), and an Boehringer Mannheim. open reading frame (ORF) downstream of msr are arranged in A deletion mutant strain ofthe Mx162 retron, AmsSX, was the same manner as found for the Mx162 retron. -
First Genomic Insights Into Members of a Candidate Bacterial Phylum Responsible for Wastewater Bulking
First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking Yuji Sekiguchi1, Akiko Ohashi1, Donovan H. Parks2, Toshihiro Yamauchi3, Gene W. Tyson2,4 and Philip Hugenholtz2,5 1 Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan 2 Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, Queensland, Australia 3 Administrative Management Department, Kubota Kasui Corporation, Minato-ku, Tokyo, Japan 4 Advanced Water Management Centre, The University of Queensland, St. Lucia, Queensland, Australia 5 Institute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland, Australia ABSTRACT Filamentous cells belonging to the candidate bacterial phylum KSB3 were previously identified as the causative agent of fatal filament overgrowth (bulking) in a high-rate industrial anaerobic wastewater treatment bioreactor. Here, we obtained near complete genomes from two KSB3 populations in the bioreactor, including the dominant bulking filament, using diVerential coverage binning of metagenomic data. Fluorescence in situ hybridization with 16S rRNA-targeted probes specific for the two populations confirmed that both are filamentous organisms. Genome-based metabolic reconstruction and microscopic observation of the KSB3 filaments in the presence of sugar gradients indicate that both filament types are Gram-negative, strictly anaerobic fermenters capable of -
Isolation, Antimicrobial Activity of Myxobacterial Crude Extracts and Identification of the Most Potent Strains
Arch Biol Sci. 2017;69(3):561-568 https://doi.org/10.2298/ABS161011132C Isolation, antimicrobial activity of myxobacterial crude extracts and identification of the most potent strains Ivana Charousová*, Juraj Medo and Soňa Javoreková Department of Microbiology, Faculty of Biotechnology and Food Sciences, Slovak University of Agriculture in Nitra, Tr. A. Hlinku 2, 949 76 Nitra, Slovakia *Corresponding author: [email protected] Received: October 11, 2016; Revised: November 14, 2016; Accepted: November 18, 2016; Published online: December 14, 2016 Abstract: Broad spectrum antimicrobial agents are urgently needed to fight frequently occurring multidrug-resistant pathogens. Myxobacteria have been regarded as “microbe factories” for active secondary metabolites, and therefore, this study was performed to isolate two bacteriolytic genera of myxobacteria, Myxococcus sp. and Corallococcus sp., from 10 soil/sand samples using two conventional methods followed by purification with the aim of determining the antimicrobial activity of methanol extracts against 11 test microorganisms (four Gram-positive, four Gram-negative, two yeasts and one fungus). Out of thirty-nine directly observed strains, 23 were purified and analyzed for antimicrobial activities. Based on the broth microdilution method, a total of 19 crude extracts showed antimicrobial activity. The range of inhibited wells was more important in the case of anti-Gram-positive-bacterial activity in comparison with the anti-Gram-negative-bacterial and antifungal activity. In light of the established degree and range of antimicrobial activity, two of the most active isolates (BNEM1 and SFEC2) were selected for further characterization. Morphological parameters and a sequence similarity search by BLAST revealed that they showed 99% sequence similarity to Myxococcus xanthus − BNEM1 (accession no. -
The Myxocoumarins a and B from Stigmatella Aurantiaca Strain MYX-030
The myxocoumarins A and B from Stigmatella aurantiaca strain MYX-030 Tobias A. M. Gulder*1, Snežana Neff2, Traugott Schüz2, Tammo Winkler2, René Gees2 and Bettina Böhlendorf*2 Full Research Paper Open Access Address: Beilstein J. Org. Chem. 2013, 9, 2579–2585. 1Kekulé Institute of Organic Chemistry and Biochemistry, University of doi:10.3762/bjoc.9.293 Bonn, Gerhard-Domagk-Straβe 1, 53121 Bonn, Germany and 2Syngenta Crop Protection AG, CH-4002 Basel, Switzerland Received: 21 August 2013 Accepted: 01 November 2013 Email: Published: 20 November 2013 Tobias A. M. Gulder* - [email protected]; Bettina Böhlendorf* - [email protected] This article is part of the Thematic Series "Natural products in synthesis and biosynthesis" and is dedicated to Prof. Dr. Gerhard Höfle on the * Corresponding author occasion of his 74th birthday. Keywords: Guest Editor: J. S. Dickschat antifungal activity; myxobacteria; natural products; Stigmatella aurantiaca; structure elucidation © 2013 Gulder et al; licensee Beilstein-Institut. License and terms: see end of document. Abstract The myxobacterial strain Stigmatella aurantiaca MYX-030 was selected as promising source for the discovery of new biologically active natural products by our screening methodology. The isolation, structure elucidation and initial biological evaluation of the myxocoumarins derived from this strain are described in this work. These compounds comprise an unusual structural framework and exhibit remarkable antifungal properties. Introduction Despite declining interest of most big R&D-driven chemical epothilones A (1), Figure 1), microtubule-stabilizing macrolac- companies in recent years, natural products continue to serve as tones that are clinically used in cancer therapy [16-20]. one of the most important sources of new bioactive chemical entities, both in the pharmaceutical [1-4] as well as in the agro- But also from an agrochemical point of view, myxobacteria chemical industry [5-8]. -
Inactivation of Stigmatella Aurantiaca Csga Gene Impares Rippling Formation- Genetika, Vol 47, No
UDC 575 DOI: 10.2298/GENSR1501119M Original scientific paper INACTIVATION OF Stigmatella aurantiaca csg A GENE IMPARES RIPPLING FORMATION Ana MILOSEVIC-DJERIC 1, Susanne MÜLLER 2, and Hans URLICH SCHAIRER 3 1 Department of Gynaecology and Obstetrics, Hospital Centre Uzice, Uzice, Serbia 2 Univeristy of Iowa, Iowa City, USA 3Zentrum fur Molekulare Biologie, ZMBH, Heidelberg, Germany Milosevic-Djeric A., S. Müller, and H. Urlich Schairer (2015): Inactivation of Stigmatella aurantiaca csgA gene impares rippling formation- Genetika, Vol 47, No. 1, 119-130. Stigmatella aurantiaca fruiting body development depends on cell-cell interactions. One type of the signaling molecule stigmolone isolated from S. aurantiaca cells acts to help cells to stay together in the aggregation phase. Another gene product involved in intercellular signaling in S. aurantiaca is the csg A homolog of Myxococcus xanthus . In close relative M. xanthus C signal the product of the csg A gene is required for rippling, aggregation and sporulation. Isolation of homologous gene in S. aurantiaca implicates a probable role of CsgA in intercellular communication. Inactivation of the gene by insertion mutagenesis caused alterations in S. aurantiaca fruiting. The motility behavior of the cells during development was changed as well as their ability to stay more closely together in the early stages of development. Inactivation of the csg A gene completely abolished rippling of the cells. This indicates the crucial role of the CsgA protein in regulating this rhythmic behavior. Key words: cell-cell signaling, development, fruiting body formation, myxobacteria, Stigmatella aurantiaca INTRODUCTION Stigmatella aurantiaca belongs to the myxobacteria famous for their ability to form multicellular structures fruiting bodies in response to the starvation conditions ( SHIMKETS et al ., 2006; ZHANG et al., 2012; CLAESSEN et al ., 2014). -
723874V1.Full.Pdf
bioRxiv preprint doi: https://doi.org/10.1101/723874; this version posted August 5, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Discovery of a polybrominated aromatic 2 secondary metabolite from a planctomycete 3 points at an ambivalent interaction with its 4 macroalgae host 5 6 7 8 9 10 11 Fabian Panter[a,b], Ronald Garcia[a,b], Angela Thewes[a,b], Nestor Zaburannyi [a,b], Boyke Bunk [b,c], Jörg 12 Overmann[b,c], Mary Victory Gutierrez [d], Daniel Krug[a,b] and Rolf Müller*[a,b] 13 14 15 * Corresponding author, rolf.mü[email protected] 16 17 18 19 20 [a] Department of Microbial Natural Products, Helmholtz-Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz 21 Centre for Infection Research (HZI) and Department of Pharmacy, Saarland University, Campus E8 1, 66123 Saarbrücken, 22 Germany 23 [b] German Centre for Infection Research (DZIF), Partner Site Hannover–Braunschweig, Germany 24 [c] Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 3814 Braunschweig, 25 Germany 26 [d] Biology Department, Far Eastern University, Nicanor Reyes St., Sampaloc, Manila, 1008 Metro Manila, Philippines 27 28 29 30 31 1 bioRxiv preprint doi: https://doi.org/10.1101/723874; this version posted August 5, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Novel Myxobacteria As a Potential Source of Natural Products and Description of Inter-Species Nature of C-Signal
Novel myxobacteria as a potential source of natural products and description of inter-species nature of C-signal Dissertation zur Erlangung des Grades des Doktors der Naturwissenschaften der Naturwissenschaftlich-Technischen Fakultät III Chemie, Pharmazie, Bio- und Werkstoffwissenschaften der Universität des Saarlandes von Ram Prasad Awal (M. Sc. in Medical Microbiology) Saarbrücken 2016 Tag des Kolloquiums: ......19.12.2016....................................... Dekan: ......Prof. Dr. Guido Kickelbick.............. Berichterstatter: ......Prof. Dr. Rolf Müller...................... ......Prof. Dr. Manfred J. Schmitt........... ............................................................... Vositz: ......Prof. Dr. Uli Kazmaier..................... Akad. Mitarbeiter: ......Dr. Jessica Stolzenberger.................. iii Diese Arbeit entstand unter der Anleitung von Prof. Dr. Rolf Müller in der Fachrichtung 8.2, Pharmazeutische Biotechnologie der Naturwissenschaftlich-Technischen Fakultät III der Universität des Saarlandes von Oktober 2012 bis September 2016. iv Acknowledgement Above all, I would like to express my special appreciation and thanks to my advisor Professor Dr. Rolf Müller. It has been an honor to be his Ph.D. student and work in his esteemed laboratory. I appreciate for his supervision, inspiration and for allowing me to grow as a research scientist. Your guidance on both research as well as on my career have been invaluable. I would also like to thank Professor Dr. Manfred J. Schmitt for his scientific support and suggestions to my research work. I am thankful for my funding sources that made my Ph.D. work possible. I was funded by Deutscher Akademischer Austauschdienst (DAAD) for 3 and half years and later on by Helmholtz-Institute. Many thanks to my co-advisors: Dr. Carsten Volz, who supported and guided me through the challenging research and Dr. Ronald Garcia for introducing me to the wonderful world of myxobacteria. -
Perspectives
Copvright 0 1999 bv the Genetics Society of Anlerica Perspectives Anecdotal, Historical and Critical Commentaries on Genetics Edited by James F. Crow and William F. Dove ROLANDTHAXTER’S Legacy and the Origins of Multicellular Development Dale Kaiser Departments of Biochemistry and of Developmental Biology, Stanford University, Stanford, Calijornia 94305 OLAND THAXTER published a bombshell in R December,1892. He reported that Chondro- myces crocatus, before then considered an imperfect fungus because of its complex fruiting bodv, was ac- tually a bacterium (Figure 1). THAXTERhad discov- ered theunicellular vegetative stage of C. crocatus; the cells he found were relatively short and they divided by binary fission. C. crocatus was, heconcluded, a “communal bacterium.” THAXTERdescribed the lo- comotion, swarming, aggregation and process of fruit- ing body formation of C. crocatus and its relatives, which are collectively called myxobacteria, with an accuracy that has survived 100 years of scrutiny. He recognized the behavioral similarity to the myxomv- cetes and the cellular slime molds, drawing attention in all three to the transition from single cells to an integrated multicellular state. He described the be- havior of myxobacteria in fructification in terms of a “course of development” because it was “a definitely recurring aggregation of individuals capable of con- certed action toward a definiteend” (THAXI‘ER1892). This essay will emphasize some implications of THAX- TER’S demonstrations, often apparently unrecognized. The striking similarities to cellular slime mold de- velopment probably led JOHN TYLERBONNER and KENNETHB. RAPER,50 years after THAXTER’Sdiscov- ery, to take independent forays into myxobacterial development. RAPER,an eminent mycologist, had in FIGURE1 .“Chondromyces crocatus fruiting bodv. -
Structural and Functional Insights from the Metagenome of an Acidic Hot Spring Microbial Planktonic Community in the Colombian Andes
Structural and Functional Insights from the Metagenome of an Acidic Hot Spring Microbial Planktonic Community in the Colombian Andes Diego Javier Jime´nez1,5*, Fernando Dini Andreote3, Diego Chaves1, Jose´ Salvador Montan˜ a1,2, Cesar Osorio-Forero1,4, Howard Junca1,4, Marı´a Mercedes Zambrano1,4, Sandra Baena1,2 1 Colombian Center for Genomic and Bioinformatics from Extreme Environments (GeBiX), Bogota´, Colombia, 2 Departamento de Biologı´a, Unidad de Saneamiento y Biotecnologı´a Ambiental, Pontificia Universidad Javeriana, Bogota´, Colombia, 3 Department of Soil Science, ‘‘Luiz de Queiroz’’ College of Agriculture, University of Sao Paulo, Piracicaba, Brazil, 4 Molecular Genetics and Microbial Ecology Research Groups, Corporacio´n CorpoGen, Bogota´, Colombia, 5 Department of Microbial Ecology, Center for Ecological and Evolutionary Studies (CEES), University of Groningen, Groningen, The Netherlands Abstract A taxonomic and annotated functional description of microbial life was deduced from 53 Mb of metagenomic sequence retrieved from a planktonic fraction of the Neotropical high Andean (3,973 meters above sea level) acidic hot spring El Coquito (EC). A classification of unassembled metagenomic reads using different databases showed a high proportion of Gammaproteobacteria and Alphaproteobacteria (in total read affiliation), and through taxonomic affiliation of 16S rRNA gene fragments we observed the presence of Proteobacteria, micro-algae chloroplast and Firmicutes. Reads mapped against the genomes Acidiphilium cryptum JF-5, Legionella pneumophila str. Corby and Acidithiobacillus caldus revealed the presence of transposase-like sequences, potentially involved in horizontal gene transfer. Functional annotation and hierarchical comparison with different datasets obtained by pyrosequencing in different ecosystems showed that the microbial community also contained extensive DNA repair systems, possibly to cope with ultraviolet radiation at such high altitudes. -
A Quantitative Assay to Study Cell Movement in the Myxobacteria
jf. Cell Sci. 25, 173-178 (i977) 173 Printed in Great Britain A QUANTITATIVE ASSAY TO STUDY CELL MOVEMENT IN THE MYXOBACTERIA JOSEPH LONSKI, RONALD HEROMIN AND DAVID INGRAHAM Department of Biology, Bucknell University, Lezvisburg, Pennsylvania, U.S.A. SUMMARY A simple quantitative assay has been developed to test the rate of cell movement of myxo- bacteria. The assay employs an agar surface and at no time are the cells cultured in a liquid environment. Isolation of a rate-increasing substance(s) from fruiting Myxococcus xartthus is reported. The understanding of the aggregative process in these bacteria will be aided by characterization of the chemotactic system. INTRODUCTION The myxobacteria represent a unique group of procaryotes which interact with each other throughout their life cycle. These interactions play a role both in the swarming and feeding process, as well as in fruiting body formation. The general properties of the myxobacteria have been reviewed several times (Dworkin, 1966; 1972). A distinctive feature of the myxobacteria is that when cells on the surface of a solid medium are deprived of specific nutrients, they shift from growth to development and begin to migrate, by means of a gliding motility, into aggregation centres (Dworkin, 1963). A number of investigations (Lev, 1954; Jennings, 1961; McVittie & Zahler, 1962; Fleugel, 1963) have suggested that this aggregation is in response to a chemo- tactic substance but this has not yet been carefully examined. Having aggregated, the cells then construct a macroscopic fruiting body. For Myxococcus xanthus this is a simple mound of myxospores encased in a slime sheath. This research was initiated to aid in the search for the mechanism of aggregation of these procaryotes. -
The Soil Microbial Food Web Revisited: Predatory Myxobacteria As Keystone Taxa?
The ISME Journal https://doi.org/10.1038/s41396-021-00958-2 ARTICLE The soil microbial food web revisited: Predatory myxobacteria as keystone taxa? 1 1 1,2 1 1 Sebastian Petters ● Verena Groß ● Andrea Söllinger ● Michelle Pichler ● Anne Reinhard ● 1 1 Mia Maria Bengtsson ● Tim Urich Received: 4 October 2018 / Revised: 24 February 2021 / Accepted: 4 March 2021 © The Author(s) 2021. This article is published with open access Abstract Trophic interactions are crucial for carbon cycling in food webs. Traditionally, eukaryotic micropredators are considered the major micropredators of bacteria in soils, although bacteria like myxobacteria and Bdellovibrio are also known bacterivores. Until recently, it was impossible to assess the abundance of prokaryotes and eukaryotes in soil food webs simultaneously. Using metatranscriptomic three-domain community profiling we identified pro- and eukaryotic micropredators in 11 European mineral and organic soils from different climes. Myxobacteria comprised 1.5–9.7% of all obtained SSU rRNA transcripts and more than 60% of all identified potential bacterivores in most soils. The name-giving and well-characterized fi 1234567890();,: 1234567890();,: predatory bacteria af liated with the Myxococcaceae were barely present, while Haliangiaceae and Polyangiaceae dominated. In predation assays, representatives of the latter showed prey spectra as broad as the Myxococcaceae. 18S rRNA transcripts from eukaryotic micropredators, like amoeba and nematodes, were generally less abundant than myxobacterial 16S rRNA transcripts, especially in mineral soils. Although SSU rRNA does not directly reflect organismic abundance, our findings indicate that myxobacteria could be keystone taxa in the soil microbial food web, with potential impact on prokaryotic community composition. -
The Correlation Between Morphological and Phylogenetic Classification of Myxobacteria
International Journal of Systematic Bacteriology (1 999), 49, 1255-1 262 Printed in Great Britain The correlation between morphological and phylogenetic classification of myxobacteria Cathrin Sproer,’ Hans Reichenbach’ and Erko Stackebrandtl Author for correspondence: Erko Stackebrandt.Tel: +49 531 2616 352. Fax: +49 531 2616 418. e-mail : [email protected] DSMZ-Deutsche Sammlung In order to determine whether morphological criteria are suitable to affiliate von Mikroorganismen und myxobacterial strains to species, a phylogenetic analysis of 16s rDNAs was Zellkulturen GmbH1 and G BF-Gesel Isc haft fur performed on 54 myxobacterial strains that represented morphologically 21 Biotechnologische species of the genera Angiococcus, Archangium, Chondromyces, Cystobacter, Forschung mbH*, 381 24 Melittangium, Myxococcus, Polyangium and Stigmatella, five invalid species Braunschweig, Germany and three unclassified isolates. The analysis included 12 previously published sequences. The branching pattern confirmed the deep trifurcation of the order Myxococcales. One lineage is defined by the genera Cystobacter, Angiococcus, Archangium, Melittangium, Myxococcus and Stigmatella. The study confirms the genus status of Corallococcus’, previously ‘Chondrococcus’,within the family Myxococcaceae. The second lineage contains the genus Chondromyces and the species Polyangium (‘Sorangium’) cellulosum, while the third lineage is comprised of Nannocystis and a strain identified as Polyangium vitellinum. With the exception of a small number of strains that did not cluster phylogenetically with members of the genus to which they were assigned by morphological criteria (‘Polyangium thaxteri’ PI t3, Polyangium cellulosum ATCC 25531T, Melittangium lichenicola ATCC 25947Tand Angiococcus disciformis An dl), the phenotypic classification should provide a sound basis for the description of neotype species in those cases where original strain material is not available or is listed as reference material.