Evolution of Individuality During the Transition from Unicellular to Multicellular Life
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AP Biology Planner
COURSE PLANNER Please note that not all activities for the course are listed, and many activities will be supplemented with additional activities such as diagram analysis, practice essays, etc. Intro to AP Biology/Scientific Method This course begins with introducing students to the seven science practices, in addition to the Big Ideas that unify the course. Students complete the lab exercises that emphasize the need for controls in experiments as well as to identify and explain potential sources of error as part of the normal scientific process. Reading in Campbell and Reece: Topics: • Intro to AP biology, the test and how to study. ♣ Activity: Theme-teams: Students research and present scientist who represent each Big Idea in AP Biology. ♣ Activity: Analyzing the AP multiple choice questions with diagrams. • Scientific Method: Steps and controlled experiments ♣ Activity: What is Science? Discussion/Poster Creation. ♣ Activity: Lab Safety activity: NIH’s Student Lab Safety Introduction Course. https://www.safetytraining.nih.gov/introcourse/labsafetyIntro.aspx ♣ Activity: Identify risks in procedures and materials (MSDS analysis) ♣ Activity: Guide to good graphing. ♣ Activity: Examining bias in science. ♣ Lab: Student Designed inquiry. The effect of environmental factors on the metabolic rate of yeast. In this student designed inquiry, students investigate environmental factors as they relate to CO2 production or O2 consumption in yeast. Students must select an independent variable and dependent variable, as well as design an experimental procedure based on an existing lab protocol. ECOLOGY The ecology unit introduces the ideas of energy processes and interactions, which are the focus of Big Idea 2 and 4. Ecology introduces students to creating, analyzing, and evaluating mathematical models in biology and prepares students to tackle evolution, the central unit in AP Biology. -
Evolutionary Developmental Biology 573
EVOC20 29/08/2003 11:15 AM Page 572 Evolutionary 20 Developmental Biology volutionary developmental biology, now often known Eas “evo-devo,” is the study of the relation between evolution and development. The relation between evolution and development has been the subject of research for many years, and the chapter begins by looking at some classic ideas. However, the subject has been transformed in recent years as the genes that control development have begun to be identified. This chapter looks at how changes in these developmental genes, such as changes in their spatial or temporal expression in the embryo, are associated with changes in adult morphology. The origin of a set of genes controlling development may have opened up new and more flexible ways in which evolution could occur: life may have become more “evolvable.” EVOC20 29/08/2003 11:15 AM Page 573 CHAPTER 20 / Evolutionary Developmental Biology 573 20.1 Changes in development, and the genes controlling development, underlie morphological evolution Morphological structures, such as heads, legs, and tails, are produced in each individual organism by development. The organism begins life as a single cell. The organism grows by cell division, and the various cell types (bone cells, skin cells, and so on) are produced by differentiation within dividing cell lines. When one species evolves into Morphological evolution is driven another, with a changed morphological form, the developmental process must have by developmental evolution changed too. If the descendant species has longer legs, it is because the developmental process that produces legs has been accelerated, or extended over time. -
Enforcement Is Central to the Evolution of Cooperation
REVIEW ARTICLE https://doi.org/10.1038/s41559-019-0907-1 Enforcement is central to the evolution of cooperation J. Arvid Ågren1,2,6, Nicholas G. Davies 3,6 and Kevin R. Foster 4,5* Cooperation occurs at all levels of life, from genomes, complex cells and multicellular organisms to societies and mutualisms between species. A major question for evolutionary biology is what these diverse systems have in common. Here, we review the full breadth of cooperative systems and find that they frequently rely on enforcement mechanisms that suppress selfish behaviour. We discuss many examples, including the suppression of transposable elements, uniparental inheritance of mito- chondria and plastids, anti-cancer mechanisms, reciprocation and punishment in humans and other vertebrates, policing in eusocial insects and partner choice in mutualisms between species. To address a lack of accompanying theory, we develop a series of evolutionary models that show that the enforcement of cooperation is widely predicted. We argue that enforcement is an underappreciated, and often critical, ingredient for cooperation across all scales of biological organization. he evolution of cooperation is central to all living systems. A major open question, then, is what, if anything, unites the Evolutionary history can be defined by a series of major tran- evolution of cooperative systems? Here, we review cooperative evo- Tsitions (Box 1) in which replicating units came together, lost lution across all levels of biological organization, which reveals a their independence and formed new levels of biological organiza- growing amount of evidence for the importance of enforcement. tion1–4. As a consequence, life is organized in a hierarchy of coop- By enforcement, we mean an action that evolves, at least in part, to eration: genes work together in genomes, genomes in cells, cells in reduce selfish behaviour within a cooperative alliance (see Box 2 for multicellular organisms and multicellular organisms in eusocial the formal definition). -
The Vital Question Why Is Life the Way It Is?
The Vital Question Why is life the way it is? Introduction Nick Lane Biochemist and writer About Dr Nick Lane is a British biochemist and writer. He was awarded the first Provost’s Venture Research Prize in the Department of Genetics, Evolution and Environment at University College London, where he is now a Reader in Evolutionary Biochemistry. Dr Lane’s research deals with evolutionary biochemistry and bioenergetics, focusing on the origin of life and the evolution of complex cells. Dr Lane was a founding member of the UCL Consortium for Mitochondrial Research, and is leading the UCL Research Frontiers Origins of Life programme. He was awarded the 2011 BMC Research Award for Genetics, Genomics, Bioinformatics and Evolution, and the 2015 Biochemical Society Award for his sustained and diverse contribution to the molecular life sciences and the public understanding of science. The Vital Question Why is life the way it is? Introduction There is a black hole at the heart of biology. Bluntly put, we do not know why life is the way it is. All complex life on earth shares a common ancestor, a cell that arose from simple bacterial progenitors on just one occasion in 4 billion years. Was this a freak accident, or did other ‘experiments’ in the evolution of complexity fail? We don’t know. We do know that this common ancestor was already a very complex cell. It had more or less the same sophistication as one of your cells, and it passed this great complexity on not just to you and me but to all its descendants, from trees to bees. -
Modelling the Order of Driver Mutations and Metabolic Mutations As Structures in Cancer Dynamics
Modelling the order of driver mutations and metabolic mutations as structures in cancer dynamics Gianluca Ascolani1 and Pietro Li´o1 1 Computer Laboratory, University of Cambridge, UK E-mail: [email protected] and [email protected] PACS numbers: 87.10.-e, 87.10.Mn, 87.10.Vg, 87.17.-d, 87.17.Aa, 87.17.Ee, 87.18.Wd, 87.19.xj, Abstract. Recent works have stressed the important role that random mutations have in the development of cancer phenotype. We challenge this current view by means of bioinformatic data analysis and computational modelling approaches. Not all the mutations are equally important for the development of metastasis. The survival of cancer cells from the primary tumour site to the secondary seeding sites depends on the occurrence of very few driver mutations promoting oncogenic cell behaviours and on the order with which these mutations occur. We introduce a model in the framework of Cellular Automata to investigate the effects of metabolic mutations and mutation order on cancer stemness and tumour cell migration in bone metastasised breast cancers. The metabolism of the cancer cell is a key factor in its proliferation rate. Bioinformatics analysis on a cancer mutation database shows that metabolism- modifying alterations constitute an important class of key cancer mutations. Our approach models three types of mutations: drivers, the order of which is relevant for the dynamics, metabolic which support cancer growth and are estimated from existing databases, and non{driver mutations. Our results provide a quantitative basis of how the order of driver mutations and the metabolic mutations in different cancer clones could impact proliferation of therapy-resistant clonal populations and patient survival. -
Comprehensive History of CSP Genes: Evolution, Phylogenetic Distribution and Functions
G C A T T A C G G C A T genes Review Comprehensive History of CSP Genes: Evolution, Phylogenetic Distribution and Functions 1, 1, 2 3 3 Guoxia Liu y, Ning Xuan y, Balaji Rajashekar , Philippe Arnaud , Bernard Offmann and Jean-François Picimbon 1,4,* 1 Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Jinan 250100, China; [email protected] (G.L.); [email protected] (N.X.) 2 Institute of Computer Science, University of Tartu, Tartu 50090, Estonia; [email protected] 3 Protein Engineering and Functionality Unit, University of Nantes, 44322 Nantes, France; [email protected] (P.A.); bernard.off[email protected] (B.O.) 4 School of Bioengineering, Qilu University of Technology, Jinan 250353, China * Correspondence: [email protected]; Tel.: +86-531-89631190 Same contribution: G.L. (Bemisia), Ning Xuan (Bombyx). y Received: 10 February 2020; Accepted: 6 April 2020; Published: 10 April 2020 Abstract: In this review we present the developmental, histological, evolutionary and functional properties of insect chemosensory proteins (CSPs) in insect species. CSPs are small globular proteins folded like a prism and notoriously known for their complex and arguably obscure function(s), particularly in pheromone olfaction. Here, we focus on direct functional consequences on protein function depending on duplication, expression and RNA editing. The result of our analysis is important for understanding the significance of RNA-editing on functionality of CSP genes, particularly in the brain tissue. Keywords: tandem duplication; RNA mutation; adaptive process; lipid transport; xenobiotic resistance; neuroplasticity This report reviews duplication, expression, evolution and RNA editing of CSP genes for neofunctionalization in insecticide resistance and neuroplasticity, with a particular special interest in functional properties of insect chemosensory proteins (CSPs). -
Theory of the Origin, Evolution, and Nature of Life
Life 2012, 2, 1-105; doi:10.3390/life2010001 OPEN ACCESS life ISSN 2075-1729 www.mdpi.com/journal/life Article Theory of the Origin, Evolution, and Nature of Life Erik D. Andrulis Department of Molecular Biology and Microbiology, Case Western Reserve University School of Medicine, Wood Building, W212, Cleveland, OH 44106, USA; E-Mail: [email protected]; Tel.: +1-216-368-0261; Fax: +1-216-368-3055 Received: 15 November 2011; in revised form: 10 December 2011 / Accepted: 13 December 2011 / Published: 23 December 2011 Abstract: Life is an inordinately complex unsolved puzzle. Despite significant theoretical progress, experimental anomalies, paradoxes, and enigmas have revealed paradigmatic limitations. Thus, the advancement of scientific understanding requires new models that resolve fundamental problems. Here, I present a theoretical framework that economically fits evidence accumulated from examinations of life. This theory is based upon a straightforward and non-mathematical core model and proposes unique yet empirically consistent explanations for major phenomena including, but not limited to, quantum gravity, phase transitions of water, why living systems are predominantly CHNOPS (carbon, hydrogen, nitrogen, oxygen, phosphorus, and sulfur), homochirality of sugars and amino acids, homeoviscous adaptation, triplet code, and DNA mutations. The theoretical framework unifies the macrocosmic and microcosmic realms, validates predicted laws of nature, and solves the puzzle of the origin and evolution of cellular life in the universe. Keywords: quantum; gyre; emergence; thermodynamics; singularity; natural law; adaptation; learning and memory 1. Introduction How life abides by the second law of thermodynamics yet evolutionarily complexifies and maintains its intrinsic order is a fundamental mystery in physics, chemistry, and biology [1]. -
Life-History Evolution and the Origin of Multicellularity
ARTICLE IN PRESS Journal of Theoretical Biology 239 (2006) 257–272 www.elsevier.com/locate/yjtbi Life-history evolution and the origin of multicellularity Richard E. Michoda,Ã, Yannick Viossatb,c, Cristian A. Solaria, Mathilde Hurandd, Aurora M. Nedelcue aDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA bLaboratoire d’E´conome´trie, Ecole Polytechnique, 1, rue Descartes, 75005 Paris, France cDepartment of Economics, Stockholm School of Economics, Box 6501, SE-113 83 Stockholm, Sweden dLaboratoire d’Informatique, Ecole Polytechnique, 91128 Palaiseau, France eDepartment of Biology, University of New Brunswick, Fredericton, NB, Canada E3B 6E1 Received 30 January 2005; received in revised form 30 July 2005; accepted 30 July 2005 Abstract The fitness of an evolutionary individual can be understood in terms of its two basic components: survival and reproduction. As embodied in current theory, trade-offs between these fitness components drive the evolution of life-history traits in extant multicellular organisms. Here, we argue that the evolution of germ–soma specialization and the emergence of individuality at a new higher level during the transition from unicellular to multicellular organisms are also consequences of trade-offs between the two components of fitness— survival and reproduction. The models presented here explore fitness trade-offs at both the cell and group levels during the unicellular–multicellular transition. When the two components of fitness negatively covary at the lower level there is an enhanced fitness at the group level equal to the covariance of components at the lower level. We show that the group fitness trade-offs are initially determined by the cell level trade-offs. -
The Modern Theory of Biological Evolution: an Expanded Synthesis
Naturwissenschaften (2004) 91:255–276 DOI 10.1007/s00114-004-0515-y REVIEW Ulrich Kutschera · Karl J. Niklas The modern theory of biological evolution: an expanded synthesis Published online: 17 March 2004 Springer-Verlag 2004 Abstract In 1858, two naturalists, Charles Darwin and of the synthetic theory have survived, but in modified Alfred Russel Wallace, independently proposed natural form. These sub-theories require continued elaboration, selection as the basic mechanism responsible for the particularly in light of molecular biology, to answer open- origin of new phenotypic variants and, ultimately, new ended questions concerning the mechanisms of evolution species. A large body of evidence for this hypothesis was in all five kingdoms of life. published in Darwin’s Origin of Species one year later, the appearance of which provoked other leading scientists like August Weismann to adopt and amplify Darwin’s Introduction perspective. Weismann’s neo-Darwinian theory of evolu- tion was further elaborated, most notably in a series of Physicists and chemists investigate the properties and books by Theodosius Dobzhansky, Ernst Mayr, Julian interactions of objects, such as electrons, photons, and Huxley and others. In this article we first summarize the atoms, which are physically uniform and invariant in their history of life on Earth and provide recent evidence characteristic traits and behavior. Accordingly, a single demonstrating that Darwin’s dilemma (the apparent experiment adducing the properties of a single entity (e.g., missing Precambrian record of life) has been resolved. electron or proton) can be used to extrapolate the Next, the historical development and structure of the properties of all comparable entities in the universe. -
4 Evolutionary History of Prokaryotes
9579_C004.fm Page 49 Monday, October 16, 2006 5:24 PM Evolutionary History 4 of Prokaryotes: Tree or No Tree? J. O. McInerney and D. E. Pisani Department of Biology, National University of Ireland Maynooth, Maynooth, Co. Kildare, Ireland M. J. O’Connell Department of Biochemistry, University College Cork, Cork, Ireland D. A. Fitzpatrick Conway Institute, University College Dublin, Dublin, Ireland C. J. Creevey European Molecular Biology Laboratory, EMBL Heidelberg, Heidelberg, Germany CONTENTS 4.1 A Brief History of Prokaryotic Systematics..........................................................................50 4.2 The Ribosomal RNA Revolution ...........................................................................................51 4.3 Conflicting Trees ....................................................................................................................52 4.4 Methodological Developments...............................................................................................54 4.5 An Emerging Consensus? ......................................................................................................56 4.6 The Prokaryotic Influence on the Eukaryote.........................................................................57 4.7 Conclusions, Future Directions and Open Questions............................................................57 Acknowledgements ..........................................................................................................................58 References ........................................................................................................................................58 -
Selection and Adaptation for Rapid Growth in Culture of Cells from Delayed Sarcomas in Nude Mice1
[CANCER RESEARCH 47, 486-492, January 15, 1987) Selection and Adaptation for Rapid Growth in Culture of Cells from Delayed Sarcomas in Nude Mice1 Harry Rubin,2 Berbie M. Chu, and Paul Arnstein Department of Molecular Biology and Virus Laboratory, University of California, Berkeley, California 94720 [H. R., B. M. CJ; National Cancer Institute, Bethesda, Maryland 20205 [P. A.]; and California State Department of Health Services, Berkeley, California 94704 [P. A.] ABSTRACT which had been initiated by inoculation of small numbers of cells had undergone a marked reduction in capacity for multi More than 1000 cells of a spontaneously transformed line of BALB/ plication on plastic as well as in agar (5, 6). This allowed us to 3T3 cells are required to initiate tumors in half the nude mice inoculated S.C., although the cells clone with an efficiency approaching 100% in make a more rigorous, quantitative analysis of the loss during culture. The cells of two tumors with prolonged latent periods, initiated tumor formation of growth capacity for culture and its resto by 2 x \(\* and 5 x 10' cells, were chosen for detailed donai analysis in ration upon passage. The results of the early work suggested culture. The cells from the tumors grew very poorly in culture in the first that the restoration was the result of a physiological adaptation. passages, but with increasing speed and efficiency in later passages. Cells The more detailed analysis of the low-dose tumors showed derived directly from the two tumors cloned in agar with an efficiency of there was considerable heterogeneity in growth capacity among 0.01 and 0.002%. -
Evolutionary Applications to Medicine and Public Health Randolph M
Evolutionary Applications ISSN 1752-4563 PERSPECTIVE The great opportunity: Evolutionary applications to medicine and public health Randolph M. Nesse1 and Stephen C. Stearns2 1 The University of Michigan 2 Yale University Keywords Abstract Darwinian, disease, evolution, medicine, public health. Evolutionary biology is an essential basic science for medicine, but few doctors and medical researchers are familiar with its most relevant principles. Most Correspondence medical schools have geneticists who understand evolution, but few have even Randolph M. Nesse, The University of one evolutionary biologist to suggest other possible applications. The canyon Michigan. Tel.: +1 734 764 6593; between evolutionary biology and medicine is wide. The question is whether fax: +1 734 647 3652; they offer each other enough to make bridge building worthwhile. What bene- e-mail: [email protected] fits could be expected if evolution were brought fully to bear on the problems Received: 4 October 2007 of medicine? How would studying medical problems advance evolutionary Accepted: 27 November 2007 research? Do doctors need to learn evolution, or is it valuable mainly for researchers? What practical steps will promote the application of evolutionary doi:10.1111/j.1752-4571.2007.00006.x biology in the areas of medicine where it offers the most? To address these questions, we review current and potential applications of evolutionary biology to medicine and public health. Some evolutionary tech- nologies, such as population genetics, serial transfer production of live vaccines, and phylogenetic analysis, have been widely applied. Other areas, such as infec- tious disease and aging research, illustrate the dramatic recent progress made possible by evolutionary insights.