Thornback Ray Family Rajidae Max Age: 15 Years
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The Evolutionary Origins of Vertebrate Haematopoiesis: Insights from Non-Vertebrate Chordates
THE EVOLUTIONARY ORIGINS OF VERTEBRATE HAEMATOPOIESIS: INSIGHTS FROM NON-VERTEBRATE CHORDATES A thesis submitted to the University of Manchester for the degree of MPhil Evolutionary Biology in the Faculty of Life Sciences. 2015 PETER E D MILLS 2 LIST OF CONTENTS List of Contents 2 List of Figures 4 List of Abbreviations 5 Abstract 6 Declaration 7 Copyright Statement 7 Introduction 8 Haematopoiesis 11 In gnathostomes 11 In cyclostomes 18 In ascidians 20 In amphioxi 22 In sea urchins 24 In fruit flies 24 The evolution of haematopoiesis 26 Haematopoiesis and innate immune cells 26 Lymphocytes 26 Erythrocytes 27 Aims 28 The basic aim 28 Choice of genes 30 Homologue identification 31 Analysis of EST collections 31 In situ hybridisations 32 gata1/2/3 rescue experiment 34 gata1/2/3 reporter experiment 36 3 Methods 39 Homologue identification 39 Analysis of EST data 39 Collection of amphioxus embryos 40 Collection of ascidian embryos 40 Collection of zebrafish embryos 40 Cloning genes 41 Whole mount in situ hybridisations 41 Knockdown and rescue of gata1 42 gata1/2/3:mCherry reporter 42 Results Homologues in non-gnathostomes 44 Gene expression in ascidian and amphioxus embryos 48 Knockdown of gata1 and rescue with gata1/2/3 51 gata1/2/3:mCherry reporter expression 52 Discussion Non-chordate gene expression 54 Amphioxus gene expression 54 Ascidian gene expression 56 Cyclostome gene expression 59 gata1/2/3 rescue experiment 60 gata1/2/3 reporter experiment 62 Evolution of erythrocytes 63 Evolution of lymphocytes 67 Conclusion 72 References 75 (Word count: 26,246) 4 LIST OF FIGURES Figure 1 – Phylogenetic relationships between the organisms studied in this thesis. -
Sharks in Crisis: a Call to Action for the Mediterranean
REPORT 2019 SHARKS IN CRISIS: A CALL TO ACTION FOR THE MEDITERRANEAN WWF Sharks in the Mediterranean 2019 | 1 fp SECTION 1 ACKNOWLEDGEMENTS Written and edited by WWF Mediterranean Marine Initiative / Evan Jeffries (www.swim2birds.co.uk), based on data contained in: Bartolí, A., Polti, S., Niedermüller, S.K. & García, R. 2018. Sharks in the Mediterranean: A review of the literature on the current state of scientific knowledge, conservation measures and management policies and instruments. Design by Catherine Perry (www.swim2birds.co.uk) Front cover photo: Blue shark (Prionace glauca) © Joost van Uffelen / WWF References and sources are available online at www.wwfmmi.org Published in July 2019 by WWF – World Wide Fund For Nature Any reproduction in full or in part must mention the title and credit the WWF Mediterranean Marine Initiative as the copyright owner. © Text 2019 WWF. All rights reserved. Our thanks go to the following people for their invaluable comments and contributions to this report: Fabrizio Serena, Monica Barone, Adi Barash (M.E.C.O.), Ioannis Giovos (iSea), Pamela Mason (SharkLab Malta), Ali Hood (Sharktrust), Matthieu Lapinksi (AILERONS association), Sandrine Polti, Alex Bartoli, Raul Garcia, Alessandro Buzzi, Giulia Prato, Jose Luis Garcia Varas, Ayse Oruc, Danijel Kanski, Antigoni Foutsi, Théa Jacob, Sofiane Mahjoub, Sarah Fagnani, Heike Zidowitz, Philipp Kanstinger, Andy Cornish and Marco Costantini. Special acknowledgements go to WWF-Spain for funding this report. KEY CONTACTS Giuseppe Di Carlo Director WWF Mediterranean Marine Initiative Email: [email protected] Simone Niedermueller Mediterranean Shark expert Email: [email protected] Stefania Campogianni Communications manager WWF Mediterranean Marine Initiative Email: [email protected] WWF is one of the world’s largest and most respected independent conservation organizations, with more than 5 million supporters and a global network active in over 100 countries. -
Skates and Rays Diversity, Exploration and Conservation – Case-Study of the Thornback Ray, Raja Clavata
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Doutoramento em Ciências do Mar 2010 UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Tese orientada por Professor Auxiliar com Agregação Leonel Serrano Gordo e Investigadora Auxiliar Ivone Figueiredo Doutoramento em Ciências do Mar 2010 The research reported in this thesis was carried out at the Instituto de Investigação das Pescas e do Mar (IPIMAR - INRB), Unidade de Recursos Marinhos e Sustentabilidade. This research was funded by Fundação para a Ciência e a Tecnologia (FCT) through a PhD grant (SFRH/BD/23777/2005) and the research project EU Data Collection/DCR (PNAB). Skates and rays diversity, exploration and conservation | Table of Contents Table of Contents List of Figures ............................................................................................................................. i List of Tables ............................................................................................................................. v List of Abbreviations ............................................................................................................. viii Agradecimentos ........................................................................................................................ -
A Systematic Revision of the South American Freshwater Stingrays (Chondrichthyes: Potamotrygonidae) (Batoidei, Myliobatiformes, Phylogeny, Biogeography)
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 1985 A systematic revision of the South American freshwater stingrays (chondrichthyes: potamotrygonidae) (batoidei, myliobatiformes, phylogeny, biogeography) Ricardo de Souza Rosa College of William and Mary - Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Fresh Water Studies Commons, Oceanography Commons, and the Zoology Commons Recommended Citation Rosa, Ricardo de Souza, "A systematic revision of the South American freshwater stingrays (chondrichthyes: potamotrygonidae) (batoidei, myliobatiformes, phylogeny, biogeography)" (1985). Dissertations, Theses, and Masters Projects. Paper 1539616831. https://dx.doi.org/doi:10.25773/v5-6ts0-6v68 This Dissertation is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. INFORMATION TO USERS This reproduction was made from a copy of a document sent to us for microfilming. While the most advanced technology has been used to photograph and reproduce this document, the quality of the reproduction is heavily dependent upon the quality of the material submitted. The following explanation of techniques is provided to help clarify markings or notations which may appear on this reproduction. 1.The sign or “target” for pages apparently lacking from the document photographed is “Missing Pagefs)”. If it was possible to obtain the missing page(s) or section, they are spliced into the film along with adjacent pages. This may have necessitated cutting through an image and duplicating adjacent pages to assure complete continuity. -
Spatial Ecology and Fisheries Interactions of Rajidae in the Uk
UNIVERSITY OF SOUTHAMPTON FACULTY OF NATURAL AND ENVIRONMENTAL SCIENCES Ocean and Earth Sciences SPATIAL ECOLOGY AND FISHERIES INTERACTIONS OF RAJIDAE IN THE UK Samantha Jane Simpson Thesis for the degree of DOCTOR OF PHILOSOPHY APRIL 2018 UNIVERSITY OF SOUTHAMPTON 1 2 UNIVERSITY OF SOUTHAMPTON ABSTRACT FACULTY OF NATURAL AND ENVIRONMENTAL SCIENCES Ocean and Earth Sciences Doctor of Philosophy FINE-SCALE SPATIAL ECOLOGY AND FISHERIES INTERACTIONS OF RAJIDAE IN UK WATERS by Samantha Jane Simpson The spatial occurrence of a species is a fundamental part of its ecology, playing a role in shaping the evolution of its life history, driving population level processes and species interactions. Within this spatial occurrence, species may show a tendency to occupy areas with particular abiotic or biotic factors, known as a habitat association. In addition some species have the capacity to select preferred habitat at a particular time and, when species are sympatric, resource partitioning can allow their coexistence and reduce competition among them. The Rajidae (skate) are cryptic benthic mesopredators, which bury in the sediment for extended periods of time with some species inhabiting turbid coastal waters in higher latitudes. Consequently, identifying skate fine-scale spatial ecology is challenging and has lacked detailed study, despite them being commercially important species in the UK, as well as being at risk of population decline due to overfishing. This research aimed to examine the fine-scale spatial occurrence, habitat selection and resource partitioning among the four skates across a coastal area off Plymouth, UK, in the western English Channel. In addition, I investigated the interaction of Rajidae with commercial fisheries to determine if interactions between species were different and whether existing management measures are effective. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Population Structure of the Thornback Ray (Raja Clavata L.) in British Waters ⁎ Malia Chevolot A, , Jim R
Journal of Sea Research 56 (2006) 305–316 www.elsevier.com/locate/seares Population structure of the thornback ray (Raja clavata L.) in British waters ⁎ Malia Chevolot a, , Jim R. Ellis b, Galice Hoarau a, Adriaan D. Rijnsdorp c, Wytze T. Stam a, Jeanine L. Olsen a a Department of Marine Benthic Ecology and Evolution, Center for Ecological and Evolutionary Studies, University of Groningen, P.O. Box 14, 9750 AA Haren, The Netherlands b Centre for Environment Fisheries and Aquaculture Sciences (CEFAS), Lowestoft Laboratory, Pakefield Road, Lowestoft, Suffolk NR33 0HT, UK c Wageningen Institute for Marine Resources and Ecological Studies (IMARES), Animal Sciences Group, Wageningen UR, P.O. Box 68, 1970 AB IJmuiden, The Netherlands Received 27 July 2005; accepted 24 May 2006 Available online 17 June 2006 Abstract Prior to the 1950s, thornback ray (Raja clavata L.) was common and widely distributed in the seas of Northwest Europe. Since then, it has decreased in abundance and geographic range due to over-fishing. The sustainability of ray populations is of concern to fisheries management because their slow growth rate, late maturity and low fecundity make them susceptible to exploitation as victims of by-catch. We investigated the population genetic structure of thornback rays from 14 locations in the southern North Sea, English Channel and Irish Sea. Adults comprised <4% of the total sampling despite heavy sampling effort over 47 hauls; thus our results apply mainly to sexually immature individuals. Using five microsatellite loci, weak but significant population differentiation was detected with a global FST = 0.013 (P < 0.001). Pairwise Fst was significant for 75 out of 171 comparisons. -
Batoid Abundances, Spatial Distribution, and Life History Traits
animals Article Batoid Abundances, Spatial Distribution, and Life History Traits in the Strait of Sicily (Central Mediterranean Sea): Bridging a Knowledge Gap through Three Decades of Survey Michele Luca Geraci 1,2 , Sergio Ragonese 2,*, Danilo Scannella 2, Fabio Falsone 2, Vita Gancitano 2 , Jurgen Mifsud 3, Miriam Gambin 3, Alicia Said 3 and Sergio Vitale 2 1 Geological and Environmental Sciences (BiGeA)–Marine Biology and Fisheries Laboratory, Department of Biological, University of Bologna, Viale Adriatico 1/n, 61032 Fano, PU, Italy; [email protected] 2 Institute for Marine Biological Resources and Biotechnology (IRBIM), National Research Council–CNR, Via Luigi Vaccara, 61, 91026 Mazara del Vallo, TP, Italy; [email protected] (D.S.); [email protected] (F.F.); [email protected] (V.G.); [email protected] (S.V.) 3 Department of Fisheries and Aquaculture, Ministry for Agriculture, Fisheries and Animal Rights (MAFA), Ghammieri Government Farm, Triq l-Ingiered, Malta; [email protected] (J.M.); [email protected] (M.G.); [email protected] (A.S.) * Correspondence: [email protected] Simple Summary: Batoid species are cartilaginous fish commonly known as rays, but they also Citation: Geraci, M.L.; Ragonese, S.; include stingrays, electric rays, guitarfish, skates, and sawfish. These species are very sensitive Scannella, D.; Falsone, F.; Gancitano, to fishing, mainly because of their slow growth rate and late maturity; therefore, they need to be V.; Mifsud, J.; Gambin, M.; Said, A.; adequately managed. Regrettably, information on life history traits (e.g., length at first maturity, Vitale, S. Batoid Abundances, Spatial sex ratio, and growth) and abundance are still scarce, particularly in the Mediterranean Sea. -
Review of Migratory Chondrichthyan Fishes
Convention on the Conservation of Migratory Species of Wild Animals Secretariat provided by the United Nations Environment Programme 14 TH MEETING OF THE CMS SCIENTIFIC COUNCIL Bonn, Germany, 14-17 March 2007 CMS/ScC14/Doc.14 Agenda item 4 and 6 REVIEW OF MIGRATORY CHONDRICHTHYAN FISHES (Prepared by the Shark Specialist Group of the IUCN Species Survival Commission on behalf of the CMS Secretariat and Defra (UK)) For reasons of economy, documents are printed in a limited number, and will not be distributed at the meeting. Delegates are kindly requested to bring their copy to the meeting and not to request additional copies. REVIEW OF MIGRATORY CHONDRICHTHYAN FISHES IUCN Species Survival Commission’s Shark Specialist Group March 2007 Taxonomic Review Migratory Chondrichthyan Fishes Contents Acknowledgements.........................................................................................................................iii 1 Introduction ............................................................................................................................... 1 1.1 Background ...................................................................................................................... 1 1.2 Objectives......................................................................................................................... 1 2 Methods, definitions and datasets ............................................................................................. 2 2.1 Methodology.................................................................................................................... -
Undulate Ray Raja Undulata
Undulate Ray Raja undulata Dorsal View (♀) Ventral View (♀) COMMON NAMES APPEARANCE Undulate Ray, Undulate Skate, Painted Ray, Raie Brunette (Fr), Raya • Maximum total length 85cm. Mosaica (Es), Razza Ondulata (It), Golfrog (Ne). • One row of 20–55 thorns along midline on males, three on females. SYNONYMS • Upper surface from light yellow to black. Raja picta (Lacepède, 1802), Raja mosaica (Lacepède, 1802), Raja • Pattern of dark wavy bands lined with twin row of white spots. fenestrata (Rafinesque, 1810),Raja atra (Muller & Henle, 1841). • Other larger white spots add to pattern. NE MED ATL • Lower surface white with dark margins. DISTRIBUTION The Undulate Ray The leading edge of the disc undulates from the snout to the is found in the wingtips, giving the species its name. The dorsal surface, except for east Atlantic from the rear quarters, is covered with small prickles with a dense patch on Senegal to the the snout region. The dorsal fins are widely spaced, normally with two southern British Isles. dorsal spines between them. Median spines are scattered in adults, It is encountered regular on young. Males have one row of 20-55 median thorns while in the western females have three (Whitehead et al., 1986). Mediterranean, mainly along the Colouration ranges from almost black to light yellow-brown with African coast, and dark wavy bands lined by a twin row of white spots. Other white spots as far west as the add to the complex pattern. The underside is white with dark margins Canary Islands (Barnes, 2008). (Whitehead et al., Some sources claim total lengths for the Undulate Ray of up to No Records 1986). -
Redescription and Taxonomic Status of Dipturus Chilensis (Guichenot, 1848), and Description of Dipturus Lamillai Sp
Zootaxa 4590 (5): 501–524 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2019 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4590.5.1 http://zoobank.org/urn:lsid:zoobank.org:pub:F484C560-CAE9-4A9E-B408-AEC2C8893DAD Redescription and taxonomic status of Dipturus chilensis (Guichenot, 1848), and description of Dipturus lamillai sp. nov. (Rajiformes: Rajidae), a new species of long-snout skate from the Falkland Islands FRANCISCO J. CONCHA1,2,7, JANINE N. CAIRA1, DAVID A. EBERT3,4,5 & JOOST H. W. POMPERT6 1Department of Ecology & Evolutionary Biology, University of Connecticut, 75 North Eagleville Road, Unit 3043 Storrs, CT 06269 – 3043, USA 2Facultad de Ciencias del Mar y de Recursos Naturales, Universidad de Valparaíso, Av. Borgoño 16344, Viña del Mar, Chile 3Pacific Shark Research Center, Moss Landing Marine Laboratories, Moss Landing, CA 95039, USA 4Department of Ichthyology, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA 94118, USA 5South African Institute for Aquatic Biodiversity, Private Bag 1015, Grahamstown 6140, South Africa 6Georgia Seafoods Ltd, Waverley House, Stanley, Falkland Islands, United Kingdom 7Corresponding author. E-mail: [email protected] Abstract Recent molecular evidence has called into question the identity of skates collected in the waters off the Falkland Islands previously identified as Zearaja chilensis. NADH2 sequence data indicate that these specimens are not conspecific with those currently referred to as Z. chilensis from Chile and, in fact, represent a novel cryptic species. This study aimed to investigate this hypothesis based on morphological comparisons of specimens from the coasts of both western and eastern South America. -
Report on the Status of Mediterranean Chondrichthyan Species
United Nations Environment Programme Mediterranean Action Plan Regional Activity Centre For Specially Protected Areas REPORT ON THE STATUS OF MEDITERRANEAN CHONDRICHTHYAN SPECIES D. CEBRIAN © L. MASTRAGOSTINO © R. DUPUY DE LA GRANDRIVE © Note : The designations employed and the presentation of the material in this document do not imply the expression of any opinion whatsoever on the part of UNEP concerning the legal status of any State, Territory, city or area, or of its authorities, or concerning the delimitation of their frontiers or boundaries. © 2007 United Nations Environment Programme Mediterranean Action Plan Regional Activity Centre for Specially Protected Areas (RAC/SPA) Boulevard du leader Yasser Arafat B.P.337 –1080 Tunis CEDEX E-mail : [email protected] Citation: UNEP-MAP RAC/SPA, 2007. Report on the status of Mediterranean chondrichthyan species. By Melendez, M.J. & D. Macias, IEO. Ed. RAC/SPA, Tunis. 241pp The original version (English) of this document has been prepared for the Regional Activity Centre for Specially Protected Areas (RAC/SPA) by : Mª José Melendez (Degree in Marine Sciences) & A. David Macías (PhD. in Biological Sciences). IEO. (Instituto Español de Oceanografía). Sede Central Spanish Ministry of Education and Science Avda. de Brasil, 31 Madrid Spain [email protected] 2 INDEX 1. INTRODUCTION 3 2. CONSERVATION AND PROTECTION 3 3. HUMAN IMPACTS ON SHARKS 8 3.1 Over-fishing 8 3.2 Shark Finning 8 3.3 By-catch 8 3.4 Pollution 8 3.5 Habitat Loss and Degradation 9 4. CONSERVATION PRIORITIES FOR MEDITERRANEAN SHARKS 9 REFERENCES 10 ANNEX I. LIST OF CHONDRICHTHYAN OF THE MEDITERRANEAN SEA 11 1 1.