Some Thoughts on Interspecific Mandibular Morphology in Fossil and Modern Alligator
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The Making of Calibration Sausage Exemplified by Recalibrating the Transcriptomic Timetree of Jawed Vertebrates
bioRxiv preprint doi: https://doi.org/10.1101/2019.12.19.882829; this version posted January 5, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. The making of calibration sausage exemplified by recalibrating the transcriptomic timetree of jawed vertebrates 1 David Marjanović 2 Department of Evolutionary Morphology, Science Programme “Evolution and Geoprocesses”, 3 Museum für Naturkunde – Leibniz Institute for Evolutionary and Biodiversity Research, Berlin, 4 Germany 5 ORCID: 0000-0001-9720-7726 6 Correspondence: 7 David Marjanović 8 [email protected] 9 Keywords: timetree, calibration, divergence date, Gnathostomata, Vertebrata 10 Abstract 11 Molecular divergence dating has the potential to overcome the incompleteness of the fossil record in 12 inferring when cladogenetic events (splits, divergences) happened, but needs to be calibrated by the 13 fossil record. Ideally but unrealistically, this would require practitioners to be specialists in molecular 14 evolution, in the phylogeny and the fossil record of all sampled taxa, and in the chronostratigraphy of 15 the sites the fossils were found in. Paleontologists have therefore tried to help by publishing 16 compendia of recommended calibrations, and molecular biologists unfamiliar with the fossil record 17 have made heavy use of such works (in addition to using scattered primary sources -
The First Crocodyliforms Remains from La Parrita Locality, Cerro Del Pueblo
Boletín de la Sociedad Geológica Mexicana / 2019 / 727 The first crocodyliforms remains from La Parrita locality, Cerro del Pueblo Formation (Campanian), Coahuila, Mexico Héctor E. Rivera-Sylva, Gerardo Carbot-Chanona, Rafael Vivas-González, Lizbeth Nava-Rodríguez, Fernando Cabral-Valdéz ABSTRACT Héctor E. Rivera-Sylva ABSTRACT RESUMEN Fernando Cabral-Valdéz Departamento de Paleontología, Museo del Desierto, Carlos Abedrop Dávila 3745, 25022, The record of land tetrapods of El registro de tetrápodos terrestres en la Saltillo, Coahuila, Mexico. the Cerro del Pueblo Formation Formación Cerro del Pueblo (Cretácico (Late Cretaceous, Campanian), in Gerardo Carbot-Chanona tardío, Campaniano) en Coahuila, incluye Coahuila, includes turtles, pterosaurs, [email protected] tortugas, pterosaurios, dinosaurios y Museo de Paleontología “Eliseo Palacios Aguil- dinosaurs, and crocodyliforms. This era”, Secretaría de Medio Ambiente e Historia last group is represented only by crocodyliformes. Este último grupo está Natural. Calzada de los hombres ilustres s/n, representado por goniofólididos, eusuquios 29000, Tuxtla Gutiérrez, Chiapas, Mexico. goniopholidids, indeterminate eusu- chians, and Brachychampsa montana. In indeterminados y Brachychampsa montana. Rafael Vivas-González this work we report the first crocodyli- En este trabajo se reportan los primeros Villa Nápoles 6506, Colonia Mirador de las Mitras, 64348, Monterrey, N. L., Mexico. form remains from La Parrita locality, restos de crocodyliformes de la localidad Cerro del Pueblo Formation, based La Parrita, Formación Cerro del Pueblo, Lizbeth Nava-Rodríguez on one isolated tooth, vertebrae, and con base en un diente aislado, vértebras y Facultad de Ingeniería, Universidad Autóno- osteoderms. The association of croc- ma de San Luis Potosí, Dr. Manuel Nava 8, osteodermos. La asociación de crocodyli- Zona Universitaria Poniente, San Luis Potosi, odyliforms, turtles, dinosaurs, and formes, tortugas, dinosaurios y oogonias S.L.P., Mexico. -
O Regist Regi Tro Fós Esta Istro De Sil De C Ado Da a E
UNIVERSIDADE FEDERAL DO RIO GRANDE DOO SUL INSTITUTO DE GEOCIÊNCIAS PROGRAMA DE PÓS-GRADUAÇÃO EM GEOCIÊNCIAS O REGISTRO FÓSSIL DE CROCODILIANOS NA AMÉRICA DO SUL: ESTADO DA ARTE, ANÁLISE CRÍTICAA E REGISTRO DE NOVOS MATERIAIS PARA O CENOZOICO DANIEL COSTA FORTIER Porto Alegre – 2011 UNIVERSIDADE FEDERAL DO RIO GRANDE DO SUL INSTITUTO DE GEOCIÊNCIAS PROGRAMA DE PÓS-GRADUAÇÃO EM GEOCIÊNCIAS O REGISTRO FÓSSIL DE CROCODILIANOS NA AMÉRICA DO SUL: ESTADO DA ARTE, ANÁLISE CRÍTICA E REGISTRO DE NOVOS MATERIAIS PARA O CENOZOICO DANIEL COSTA FORTIER Orientador: Dr. Cesar Leandro Schultz BANCA EXAMINADORA Profa. Dra. Annie Schmalz Hsiou – Departamento de Biologia, FFCLRP, USP Prof. Dr. Douglas Riff Gonçalves – Instituto de Biologia, UFU Profa. Dra. Marina Benton Soares – Depto. de Paleontologia e Estratigrafia, UFRGS Tese de Doutorado apresentada ao Programa de Pós-Graduação em Geociências como requisito parcial para a obtenção do Título de Doutor em Ciências. Porto Alegre – 2011 Fortier, Daniel Costa O Registro Fóssil de Crocodilianos na América Do Sul: Estado da Arte, Análise Crítica e Registro de Novos Materiais para o Cenozoico. / Daniel Costa Fortier. - Porto Alegre: IGEO/UFRGS, 2011. [360 f.] il. Tese (doutorado). - Universidade Federal do Rio Grande do Sul. Instituto de Geociências. Programa de Pós-Graduação em Geociências. Porto Alegre, RS - BR, 2011. 1. Crocodilianos. 2. Fósseis. 3. Cenozoico. 4. América do Sul. 5. Brasil. 6. Venezuela. I. Título. _____________________________ Catalogação na Publicação Biblioteca Geociências - UFRGS Luciane Scoto da Silva CRB 10/1833 ii Dedico este trabalho aos meus pais, André e Susana, aos meus irmãos, Cláudio, Diana e Sérgio, aos meus sobrinhos, Caio, Júlia, Letícia e e Luíza, à minha esposa Ana Emília, e aos crocodilianos, fósseis ou viventes, que tanto me fascinam. -
Phylogenetic Analysis of a New Morphological Dataset Elucidates the Evolutionary History of Crocodylia and Resolves the Long-Standing Gharial Problem
Phylogenetic analysis of a new morphological dataset elucidates the evolutionary history of Crocodylia and resolves the long-standing gharial problem Jonathan P. Rio1 and Philip D. Mannion2* 1Department of Earth Science and Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK 2Department of Earth Sciences, University College London, Gower Street, London, WC1E 6BT, UK *Corresponding author (email address: [email protected]) ABSTRACT First appearing in the latest Cretaceous, Crocodylia is a clade of mostly semi-aquatic, predatory reptiles, defined by the last common ancestor of extant alligators, caimans, crocodiles, and gharials. Despite large strides in resolving extant and fossil crocodylian interrelationships over the last three decades, several outstanding problems persist in crocodylian systematics. Most notably, there has been persistent discordance between morphological and molecular datasets surrounding the affinities of the extant gharials, Gavialis gangeticus and Tomistoma schlegelii. Whereas molecular data consistently support a sister relationship between the extant gharials, which appear to be more closely related to crocodylids than to alligatorids, morphological data indicate that Gavialis is the sister taxon to all other extant crocodylians. Here we present a new morphological dataset for Crocodylia, based on a critical reappraisal of published crocodylian character data matrices and extensive first-hand observations of a global sample of crocodylians. This comprises the most taxonomically comprehensive crocodylian dataset to date (144 OTUs scored for 330 characters) and includes a new, illustrated character list with modifications to the construction and scoring of characters, and 46 novel characters. Under a maximum parsimony framework, our analyses robustly recover Gavialis as more closely related to Tomistoma than to other extant crocodylians for the first time based on morphology alone. -
AMERICAN MUSEUM NOVITATES Publishe by Number 623 the AMERICAN MIUSEU OFATURAL HISTORY May 23, 1933
AMERICAN MUSEUM NOVITATES Publishe by Number 623 THE AMERICAN MIUSEU OFATURAL HISTORY May 23, 1933 56.81, 4 E (1181:82.9) A NEW CROCODILIAN FROM THE NOTOSTYLOPS BEDS OF PATAGONIA.' BY GEORGE GAYLORD SIMPSON The Scarritt Patagonian Expedition found remains of crocodiles, for the most part fragmentary, at a number of localities and horizons in Patagonia. Much of this material has not yet been prepared and its final publication must be long deferred, but there is already available a good, identifiable specimen from the Notostylops Beds which is of such interest that a preliminary discussion of it is here presented. This form, representing a new genus and species, is of unusual importance not only in itself and as a member of an extraordinarily rich and varied fauna, but also in its bearing on important problems of phylogeny, of paleogeog- raphy and faunal origin, and of correlation. DESCRIPTION E , new genus TYPnE.-Eocaiman cavenens, new species. DISTRIBUTION.-Notostylops Beds of Patagonia, DIAGNOsIs.-A true crocodilid or alligatorid with broad snout and alligatoroid bite. Pre- and inter-orbital crests as in Jacard. Orbits large and close together. Anterior processes of palatines extending well in advance of posterior palatal vacuities and irregularly quadrate, as in Caiman but les elongate. Posterior palatal vacuities relatively wide and short, irregularly oval, the pterygoids forming the whole posterior border. Pterygoids short, and internal nares nearer their anterior than their posterior edges, relatively far forward. Lower jaw shallow but stout, with pronounced undula- tion of dental border. Symphysis extending about to fifth or sixth tooth, very shallow and wide. -
Leidyosuchus (Crocodylia: Alligatoroidea) from the Upper Cretaceous Kaiparowits Formation (Late Campanian) of Utah, USA
PaleoBios 30(3):72–88, January 31, 2014 © 2014 University of California Museum of Paleontology Leidyosuchus (Crocodylia: Alligatoroidea) from the Upper Cretaceous Kaiparowits Formation (late Campanian) of Utah, USA ANDREW A. FARKE,1* MADISON M. HENN,2 SAMUEL J. WOODWARD,2 and HEENDONG A. XU2 1Raymond M. Alf Museum of Paleontology, 1175 West Baseline Road, Claremont, CA 91711 USA; email: afarke@ webb.org. 2The Webb Schools, 1175 West Baseline Road, Claremont, CA 91711 USA Several crocodyliform lineages inhabited the Western Interior Basin of North America during the late Campanian (Late Cretaceous), with alligatoroids in the Kaiparowits Formation of southern Utah exhibiting exceptional diversity within this setting. A partial skeleton of a previously unknown alligatoroid taxon from the Kaiparowits Formation may represent the fifth alligatoroid and sixth crocodyliform lineage from this unit. The fossil includes the lower jaws, numerous osteoderms, vertebrae, ribs, and a humerus. The lower jaw is generally long and slender, and the dentary features 22 alveoli with conical, non-globidont teeth. The splenial contributes to the posterior quarter of the mandibu- lar symphysis, which extends posteriorly to the level of alveolus 8, and the dorsal process of the surangular is forked around the terminal alveolus. Dorsal midline osteoderms are square. This combination of character states identifies the Kaiparowits taxon as the sister taxon of the early alligatoroid Leidyosuchus canadensis from the Late Cretaceous of Alberta, the first verified report of theLeidyosuchus (sensu stricto) lineage from the southern Western Interior Basin. This phylogenetic placement is consistent with at least occasional faunal exchanges between northern and southern parts of the Western Interior Basin during the late Campanian, as noted for other reptile clades. -
Two Rare Mosasaurs from the Maastrichtian of Angola and the Netherlands
Netherlands Journal of Geosciences — Geologie en Mijnbouw | 92 – 1 | 3-10 | 2013 Two rare mosasaurs from the Maastrichtian of Angola and the Netherlands A.S. Schulp1,2,*, M.J. Polcyn3, O. Mateus4,5 & L.L. Jacobs3 1 Natuurhistorisch Museum Maastricht, De Bosquetplein 6-7, 6211 KJ Maastricht, the Netherlands 2 Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV Amsterdam, the Netherlands 3 Huffington Department of Earth Sciences, Southern Methodist University, Dallas, TX75275, USA 4 CICEGe, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Monte de Caparica, Portugal 5 Museu da Lourinhã, Rua João Luis de Moura 95, 2530-158 Lourinhã, Portugal * Corresponding author. Email: [email protected] Manuscript received: October 2011, accepted: June 2012 Abstract We report here the addition of two rare mosasaur taxa to the Maastrichtian marine amniote fauna of Angola, both of which are also found in northern Europe. The new specimens include a dentary fragment referable to the large carnivore Prognathodon cf. saturator and an isolated tooth of the small durophage Carinodens belgicus. Both were recovered from Maastrichtian outcrops in southern Angola in 2011. Additionally, a complete posterior mandibular unit of a large mosasaur from the type Maastrichtian of the Netherlands, collected some time prior to 1879 and previously identified as ‘Mosasaurus giganteus’, is described and reassigned here to Prognathodon saturator; historical issues surrounding the taxonomic attribution of this specimen are clarified. The new material extends the known geographic distribution of Prognathodon saturator and Carinodens belgicus. Keywords: Mosasauridae, Prognathodon, Carinodens, Maastrichtian, Angola, the Netherlands Introduction Limburg Province, the Netherlands); the holotype is now housed in the collections of the Natuurhistorisch Museum In recent years our knowledge of the marine reptile fauna of Maastricht (NHMM1998-141). -
Genus/Species Skull Ht Lt Wt Time Range Adzhosuchus U.Jurassic Mongolia A. Fuscus U.Jurassic Mongolia Aegyptosuchus U.Cretaceous Egypt A
Genus/Species Skull Ht Lt Wt Time Range Adzhosuchus U.Jurassic Mongolia A. fuscus U.Jurassic Mongolia Aegyptosuchus U.Cretaceous Egypt A. peyeri Cenomanian Egypt Aelodon see Aeolodon Aeollodon see Aeolodon Aeolodon U.Jurassic Germany A. priscus 16 cm 1.2 m? Kimmeridgian Germany Aggiosaurus U.Jurassic France A. nicaeensis U.Jurassic France Aigialosuchus U.Cretaceous Sweden A. villandensis Campanian Sweden Akanthosuchus Paleocene W USA A. langstoni Torrejonian New Mexico(US) Akantosuchus see Akanthosuchus A. langstoni see Akanthosuchus langstoni Albertochampsa 20 cm 1.6 m? U.Cretaceous Canada A. langstoni 20 cm 1.6 m? Campanian Alberta(Cnda) Aligator see Alligator Alligator 5.8 m Oligocene-Recent N America,China A. ameghinoi A. australis see Proalligator paranensis? A. cuvieri see Alligator mississippiensis A. darwini see Diplocynodon darwini A. gaudryi see Arambourgia gaudryi A. hantoniensis see Diplocynodon hantoniensis A. helois see Alligator mississippiensis A. heterodon see Crocodylus heterodon & Allognathosuchus heterodon A. lacordairei see Crocodylus acutus A. lucius see Alligator mississippiensis A. lutescens see Caiman lutescens A. mcgrewi 2 m Barstovian Nebraska(US) A. mefferdi Clarendonian Nebraska(US) A. mississipiensis living American Alligator M.Miocene-Recent Florida,Nebraska,Missouri,Georgia(US) A. olseni 25 cm 2.5 m? Hemingfordian Florida(US) A. parahybensis Pliocene Sao Paulo(Brazil) A. prenasalis 76 cm Chadronian S Dakota(US) A. sp. Arikareean Texas(US) A. sp. Barstovian Texas(US) A. sp. Duchesnean Texas(US) A. sp. Miocene Nebraska(US) A. styriacus see Crocodylus styriacus A. thompsoni(thomsoni) 36 cm 2.15 m Barstovian Nebraska(US) A. visheri 2 m Chadronian S Dakota(US) Alligatorellus 30 cm U.Jurassic Germany A. -
Turtle Shell Impression in a Coprolite from South Carolina, USA
Ichnos An International Journal for Plant and Animal Traces ISSN: 1042-0940 (Print) 1563-5236 (Online) Journal homepage: http://www.tandfonline.com/loi/gich20 Turtle Shell Impression in a Coprolite from South Carolina, USA Stephen J. Godfrey, Robert E. Weems & Billy Palmer To cite this article: Stephen J. Godfrey, Robert E. Weems & Billy Palmer (2017): Turtle Shell Impression in a Coprolite from South Carolina, USA, Ichnos To link to this article: https://doi.org/10.1080/10420940.2017.1386662 Published online: 18 Dec 2017. Submit your article to this journal View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=gich20 Download by: [64.26.88.100] Date: 18 December 2017, At: 11:46 ICHNOS https://doi.org/10.1080/10420940.2017.1386662 Turtle Shell Impression in a Coprolite from South Carolina, USA Stephen J. Godfreya,b, Robert E. Weemsa,c, and Billy Palmerd aDepartment of Paleontology, Calvert Marine Museum, Solomons, Maryland, USA; bNational Museum of Natural History, Smithsonian Institution, Washington, District of Columbia, USA; cPaleo Quest, Gainesville, Virginia, USA; dYoung Paleo Institute, Huntingtown, Maryland, USA ABSTRACT KEYWORDS Coprolites (fossilized feces) can preserve a wide range of biogenic components. A mold of a Coprolite; Turtle shell hatchling turtle partial shell (carapace) referable to Taphrosphys sulcatus is here identified within a impression; Taphrosphys; coprolite from Clapp Creek in Kingstree, Williamsburg County, South Carolina, USA. The specimen is Bothremydidae; Testudines; the first-known coprolite to preserve a vertebrate body impression. The small size of the turtle shell Theropod; Dinosaur; Bird; Mosasaur; Crocodylian coupled with the fact that it shows signs of breakage indicates that the turtle was ingested and that the impression was made while the feces were still within the body of the predator. -
The Jurassic/Cretaceous Boundary: a Hidden Mass Extinction in Tetrapods?
The Jurassic/Cretaceous boundary: a hidden mass extinction in tetrapods? Jonathan P. Tennant CID: 00661116 Imperial College London Department of Earth Science and Engineering Thesis submitted to fulfil the requirements for the degree of Doctor of Philosophy and Diploma of Imperial College Image credit: Robert Nicholls (CC BY 4.0). Depicts Sarcosuchus imperator, a giant predatory crocodyliform from the Cretaceous of North Africa. 1 Declaration of originality I declare that the works presented within this thesis are my own, and that all other work is appropriately acknowledged and referenced within. Copyright declaration The copyright of this thesis rests with the author, and it is made available under a Creative Commons Attribution (CC BY 4.0) license. Researchers are free to copy, distribute and transmit this thesis on the condition that it is appropriately attributed. Jonathan Peter Tennant Supervisors: Dr. Philip Mannion (Imperial College London); Prof. Paul Upchurch (University College London); Dr. Mark Sutton (Imperial College London). 2 Acknowledgements First and definitely foremost, I want to extend my greatest thanks to Phil Mannion. As his first PhD student, I am sure he regretted his decision after day one, but stuck with it until the end, and has been a stoic mentor throughout. This project would have been a shadow of what it came to be without his guidance. I am still yet to get him on Twitter though. I am also hugely grateful to Paul Upchurch and Mark Sutton for their input and experience throughout this project. I also could not have completed this project without the encouragement and support from my girlfriend, friends, and family, and am hugely grateful to them. -
A New Horned Crocodile from the Plio- Pleistocene Hominid Sites at Olduvai Gorge, Tanzania
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/41657431 A New Horned Crocodile from the Plio- Pleistocene Hominid Sites at Olduvai Gorge, Tanzania Article in PLoS ONE · February 2010 DOI: 10.1371/journal.pone.0009333 · Source: PubMed CITATIONS READS 43 271 4 authors: Christopher Brochu Jackson K Njau University of Iowa Indiana University Bloomington 106 PUBLICATIONS 3,595 CITATIONS 52 PUBLICATIONS 701 CITATIONS SEE PROFILE SEE PROFILE Robert J. Blumenschine Llewellyn D Densmore Palaeontological Scientific Trust (PAST) Texas Tech University 74 PUBLICATIONS 5,184 CITATIONS 370 PUBLICATIONS 1,850 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Vitellogenin as a biomarker for endocrine disruptors. View project Fossil birds from Middle Bed II, Olduvai Gorge, Tanzania View project All content following this page was uploaded by Christopher Brochu on 27 February 2017. The user has requested enhancement of the downloaded file. A New Horned Crocodile from the Plio-Pleistocene Hominid Sites at Olduvai Gorge, Tanzania Christopher A. Brochu1*, Jackson Njau2,3, Robert J. Blumenschine4, Llewellyn D. Densmore5 1 Department of Geoscience, University of Iowa, Iowa City, Iowa, United States of America, 2 Human Evolution Research Center, Department of Integrative Biology, University of California, Berkeley, California, United States of America, 3 National Natural History Museum, Arusha, Tanzania, 4 Center for Human Evolutionary Studies, Department of Anthropology, Rutgers University, New Brunswick, New Jersey, United States of America, 5 Department of Biological Sciences, Texas Tech University, Lubbock, Texas, United States of America Abstract Background: The fossil record reveals surprising crocodile diversity in the Neogene of Africa, but relationships with their living relatives and the biogeographic origins of the modern African crocodylian fauna are poorly understood. -
Download/4084574/Burrow Young1999.Pdf 1262 Burrow, C
bioRxiv preprint doi: https://doi.org/10.1101/2019.12.19.882829; this version posted December 27, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under 1aCC-BY-ND 4.0 International license. Recalibrating the transcriptomic timetree of jawed vertebrates 1 David Marjanović 2 Department of Evolutionary Morphology, Science Programme “Evolution and Geoprocesses”, 3 Museum für Naturkunde – Leibniz Institute for Evolutionary and Biodiversity Research, Berlin, 4 Germany 5 Correspondence: 6 David Marjanović 7 [email protected] 8 Keywords: timetree, calibration, divergence date, Gnathostomata, Vertebrata 9 Abstract 10 Molecular divergence dating has the potential to overcome the incompleteness of the fossil record in 11 inferring when cladogenetic events (splits, divergences) happened, but needs to be calibrated by the 12 fossil record. Ideally but unrealistically, this would require practitioners to be specialists in molecular 13 evolution, in the phylogeny and the fossil record of all sampled taxa, and in the chronostratigraphy of 14 the sites the fossils were found in. Paleontologists have therefore tried to help by publishing 15 compendia of recommended calibrations, and molecular biologists unfamiliar with the fossil record 16 have made heavy use of such works. Using a recent example of a large timetree inferred from 17 molecular data, I demonstrate that calibration dates cannot be taken from published compendia 18 without risking strong distortions to the results, because compendia become outdated faster than they 19 are published. The present work cannot serve as such a compendium either; in the slightly longer 20 term, it can only highlight known and overlooked problems.