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Evolutionary History of Lake Tanganyika's Predatory Deepwater
Hindawi Publishing Corporation International Journal of Evolutionary Biology Volume 2012, Article ID 716209, 10 pages doi:10.1155/2012/716209 Research Article Evolutionary History of Lake Tanganyika’s Predatory Deepwater Cichlids Paul C. Kirchberger, Kristina M. Sefc, Christian Sturmbauer, and Stephan Koblmuller¨ Department of Zoology, Karl-Franzens-University Graz, Universitatsplatz¨ 2, 8010 Graz, Austria Correspondence should be addressed to Stephan Koblmuller,¨ [email protected] Received 22 December 2011; Accepted 5 March 2012 Academic Editor: R. Craig Albertson Copyright © 2012 Paul C. Kirchberger et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Hybridization among littoral cichlid species in Lake Tanganyika was inferred in several molecular phylogenetic studies. The phenomenon is generally attributed to the lake level-induced shoreline and habitat changes. These allow for allopatric divergence of geographically fragmented populations alternating with locally restricted secondary contact and introgression between incompletely isolated taxa. In contrast, the deepwater habitat is characterized by weak geographic structure and a high potential for gene flow, which may explain the lower species richness of deepwater than littoral lineages. For the same reason, divergent deepwater lineages should have evolved strong intrinsic reproductive isolation already in the incipient stages of diversification, and, consequently, hybridization among established lineages should have been less frequent than in littoral lineages. We test this hypothesis in the endemic Lake Tanganyika deepwater cichlid tribe Bathybatini by comparing phylogenetic trees of Hemibates and Bathybates species obtained with nuclear multilocus AFLP data with a phylogeny based on mitochondrial sequences. -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Eco-Ethology of Shell-Dwelling Cichlids in Lake Tanganyika
ECO-ETHOLOGY OF SHELL-DWELLING CICHLIDS IN LAKE TANGANYIKA THESIS Submitted in Fulfilment of the Requirements for the Degree of MASTER OF SCIENCE of Rhodes University by IAN ROGER BILLS February 1996 'The more we get to know about the two greatest of the African Rift Valley Lakes, Tanganyika and Malawi, the more interesting and exciting they become.' L.C. Beadle (1974). A male Lamprologus ocel/alus displaying at a heterospecific intruder. ACKNOWLEDGMENTS The field work for this study was conducted part time whilst gworking for Chris and Jeane Blignaut, Cape Kachese Fisheries, Zambia. I am indebted to them for allowing me time off from work, fuel, boats, diving staff and equipment and their friendship through out this period. This study could not have been occured without their support. I also thank all the members of Cape Kachese Fisheries who helped with field work, in particular: Lackson Kachali, Hanold Musonda, Evans Chingambo, Luka Musonda, Whichway Mazimba, Rogers Mazimba and Mathew Chama. Chris and Jeane Blignaut provided funds for travel to South Africa and partially supported my work in Grahamstown. The permit for fish collection was granted by the Director of Fisheries, Mr. H.D.Mudenda. Many discussions were held with Mr. Martin Pearce, then the Chief Fisheries Officer at Mpulungu, my thanks to them both. The staff of the JLB Smith Institute and DIFS (Rhodes University) are thanked for help in many fields: Ms. Daksha Naran helped with computing and organisation of many tables and graphs; Mrs. S.E. Radloff (Statistics Department, Rhodes University) and Dr. Horst Kaiser gave advice on statistics; Mrs Nikki Kohly, Mrs Elaine Heemstra and Mr. -
Spatial Models of Speciation 1.0Cm Modelos Espaciais De Especiação
UNIVERSIDADE ESTADUAL DE CAMPINAS INSTITUTO DE BIOLOGIA CAROLINA LEMES NASCIMENTO COSTA SPATIAL MODELS OF SPECIATION MODELOS ESPACIAIS DE ESPECIAÇÃO CAMPINAS 2019 CAROLINA LEMES NASCIMENTO COSTA SPATIAL MODELS OF SPECIATION MODELOS ESPACIAIS DE ESPECIAÇÃO Thesis presented to the Institute of Biology of the University of Campinas in partial fulfill- ment of the requirements for the degree of Doc- tor in Ecology Tese apresentada ao Instituto de Biologia da Universidade Estadual de Campinas como parte dos requisitos exigidos para a obtenção do título de Doutora em Ecologia Orientador: Marcus Aloizio Martinez de Aguiar ESTE ARQUIVO DIGITAL CORRESPONDE À VERSÃO FINAL DA TESE DEFENDIDA PELA ALUNA CAROLINA LEMES NASCIMENTO COSTA, E ORIENTADA PELO PROF DR. MAR- CUS ALOIZIO MARTINEZ DE AGUIAR. CAMPINAS 2019 Ficha catalográfica Universidade Estadual de Campinas Biblioteca do Instituto de Biologia Mara Janaina de Oliveira - CRB 8/6972 Costa, Carolina Lemes Nascimento, 1989- C823s CosSpatial models of speciation / Carolina Lemes Nascimento Costa. – Campinas, SP : [s.n.], 2019. CosOrientador: Marcus Aloizio Martinez de Aguiar. CosTese (doutorado) – Universidade Estadual de Campinas, Instituto de Biologia. Cos1. Especiação. 2. Radiação adaptativa (Evolução). 3. Modelos biológicos. 4. Padrão espacial. 5. Macroevolução. I. Aguiar, Marcus Aloizio Martinez de, 1960-. II. Universidade Estadual de Campinas. Instituto de Biologia. III. Título. Informações para Biblioteca Digital Título em outro idioma: Modelos espaciais de especiação Palavras-chave em inglês: Speciation Adaptive radiation (Evolution) Biological models Spatial pattern Macroevolution Área de concentração: Ecologia Titulação: Doutora em Ecologia Banca examinadora: Marcus Aloizio Martinez de Aguiar [Orientador] Mathias Mistretta Pires Sabrina Borges Lino Araujo Rodrigo André Caetano Gustavo Burin Ferreira Data de defesa: 25-02-2019 Programa de Pós-Graduação: Ecologia Powered by TCPDF (www.tcpdf.org) Comissão Examinadora: Prof. -
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CICHLIFORMES: Cichlidae (part 3) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 6.0 - 30 April 2021 Order CICHLIFORMES (part 3 of 8) Family CICHLIDAE Cichlids (part 3 of 7) Subfamily Pseudocrenilabrinae African Cichlids (Haplochromis through Konia) Haplochromis Hilgendorf 1888 haplo-, simple, proposed as a subgenus of Chromis with unnotched teeth (i.e., flattened and obliquely truncated teeth of H. obliquidens); Chromis, a name dating to Aristotle, possibly derived from chroemo (to neigh), referring to a drum (Sciaenidae) and its ability to make noise, later expanded to embrace cichlids, damselfishes, dottybacks and wrasses (all perch-like fishes once thought to be related), then beginning to be used in the names of African cichlid genera following Chromis (now Oreochromis) mossambicus Peters 1852 Haplochromis acidens Greenwood 1967 acies, sharp edge or point; dens, teeth, referring to its sharp, needle-like teeth Haplochromis adolphifrederici (Boulenger 1914) in honor explorer Adolf Friederich (1873-1969), Duke of Mecklenburg, leader of the Deutsche Zentral-Afrika Expedition (1907-1908), during which type was collected Haplochromis aelocephalus Greenwood 1959 aiolos, shifting, changing, variable; cephalus, head, referring to wide range of variation in head shape Haplochromis aeneocolor Greenwood 1973 aeneus, brazen, referring to “brassy appearance” or coloration of adult males, a possible double entendre (per Erwin Schraml) referring to both “dull bronze” color exhibited by some specimens and to what -
Chambo: Is It Taste Or Something Else? Preference and Acceptability
Aqua-Fish Tech.. E f * . twit. ;Vs>: 2, iV.v. ii/fV? Chambo: Is it taste or something else? Preference and acceptability of roasted, fried and boiled Oreochrontis spp, (Chambo), Rhamphochromis spp (Ncheni) and Bagrus me- ridionalis (Kampango) from Lake Malawi 'K. Kaunda,, 2D. Maliro, 3M. Mphepo, 4S. Khaila SL. Kamanga, 6A, Mwangwela & '(). Cliapotoka ' Aquaculture and Fisheries Science Department, Bunda College Box 219, Lilongwe : Rural Development Department, Bunda College, Box 219 Lilongwe 1 World Vision International, Box 2050, Blantyre 4 Centre for Research and Development, Bunda College, Box 219 Lilongwe. Malawi 5 Animal Science Department, Bunda College, Box 219 Lilongwe Abstract A study to determine preference and acceptability of roasted, fried and boiled Oreochromis spp, (Chambo), Rhamphochromis spp (Ncheni) and Bagrus meridional is (Kampango) from Lake Malawi was conducted in Oc tober 2002, at Bunda College. A sensory panel of 73 people from Bunda College community responded to a structured questionnaire and carried out a sensory evaluation on unidentified fish samples to determine the most preferred fish species. Results from a structured questionnaire showed that Chambo was the most pre ferred species at the market, while the sensory evaluation revealed that most people (65% and 93%) ranked Ncheni as first choice for taste and preference, respectively. Results suggest that while people perceive Chambo as the best fish and hence escalating its demand and therefore its price, Chambo may not be the best in terms of taste. Introduction naires were administered to an untrained sensory The bulk of fish in Malawi is supplied front Lakes panel composed of 73 members. The panellists com Malawi and Malombe. -
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CICHLIFORMES: Cichlidae (part 5) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 10.0 - 11 May 2021 Order CICHLIFORMES (part 5 of 8) Family CICHLIDAE Cichlids (part 5 of 7) Subfamily Pseudocrenilabrinae African Cichlids (Palaeoplex through Yssichromis) Palaeoplex Schedel, Kupriyanov, Katongo & Schliewen 2020 palaeoplex, a key concept in geoecodynamics representing the total genomic variation of a given species in a given landscape, the analysis of which theoretically allows for the reconstruction of that species’ history; since the distribution of P. palimpsest is tied to an ancient landscape (upper Congo River drainage, Zambia), the name refers to its potential to elucidate the complex landscape evolution of that region via its palaeoplex Palaeoplex palimpsest Schedel, Kupriyanov, Katongo & Schliewen 2020 named for how its palaeoplex (see genus) is like a palimpsest (a parchment manuscript page, common in medieval times that has been overwritten after layers of old handwritten letters had been scraped off, in which the old letters are often still visible), revealing how changes in its landscape and/or ecological conditions affected gene flow and left genetic signatures by overwriting the genome several times, whereas remnants of more ancient genomic signatures still persist in the background; this has led to contrasting hypotheses regarding this cichlid’s phylogenetic position Pallidochromis Turner 1994 pallidus, pale, referring to pale coloration of all specimens observed at the time; chromis, a name -
Hered 347 Master..Hered 347 .. Page702
Heredity 80 (1998) 702–714 Received 3 June 1997 Phylogeny of African cichlid fishes as revealed by molecular markers WERNER E. MAYER*, HERBERT TICHY & JAN KLEIN Max-Planck-Institut f¨ur Biologie, Abteilung Immungenetik, Corrensstr. 42, D-72076 T¨ubingen, Germany The species flocks of cichlid fish in the three great East African Lakes, Victoria, Malawi, and Tanganyika, have arisen in each lake by explosive adaptive radiation. Various questions concerning their phylogeny have not yet been answered. In particular, the identity of the ancestral founder species and the monophyletic origin of the haplochromine cichlids from the East African lakes have not been established conclusively. In the present study, we used the anonymous nuclear DNA marker DXTU1 as a step towards answering these questions. A 280 bp-fragment of the DXTU1 locus was amplified by the polymerase chain reaction from East African lacustrine species, the East African riverine cichlid species Haplochromis bloyeti, H. burtoni and H. sparsidens, and other African cichlids. Sequencing revealed several indels and substitutions that were used as cladistically informative markers to support a phylogenetic tree constructed by the neighbor-joining method. The topology, although not supported by high bootstrap values, corresponds well to the geographical distribution and previous classifica- tion of the cichlids. Markers could be defined that: (i) differentiate East African from West African cichlids; (ii) distinguish the riverine and Lake Victoria/Malawi haplochromines from Lake Tanganyika cichlids; and (iii) indicate the existence of a monophyletic Lake Victoria cichlid superflock which includes haplochromines from satellite lakes and East African rivers. In order to resolve further the relationship of East African riverine and lacustrine species, mtDNA cytochrome b and control region segments were sequenced. -
Similar Morphologies of Cichlid Fish in Lakes Tanganyika and Malawi Are Due to Convergence Thomas D
MOLECULAR PHYLOGENETICS AND EVOLUTION Vol. 2. No. 2, June. pp. 158-165. 1993 Similar Morphologies of Cichlid Fish in Lakes Tanganyika and Malawi Are Due to Convergence Thomas D. Kocher , * '1 Janet A. Conroy,* Kenneth R. McKaye,* and Jay R. Stauffer* * Department of Zoology, University of New Hampshire, Durham, New Hampshire 03824; t Appalachian Environmental Laboratory, University of Maryland, Frostburg, Maryland 21532; t School of Forest Resources, Pennsylvania State University, University Park, Pennsylvania 16802 Received March 22, 1993; revised June 29, 1993 ancestor for the Lake Victoria cichlid flock (Sage et al., The species flocks of cichlid fishes in the lakes of East 1984; Meyer et al., 1990). The mechanisms by which Africa are the most spectacular example of adaptive so many species have arisen in such a short time, radiation among living vertebrates. Similar highly de within closed lake basins, are a fascinating subject for rived morphologies are found among species in differ research. ent lakes. These similarities have been variously inter A separate, monophyletic origin for the species flock preted either as evidence for migration of ancestral in each lake has often been assumed, partly because species between the lakes, or of striking convergence of the high levels of endemicity found in the cichlid of morphology. To distinguish among these competing fauna, and partly because of the ancient and isolated hypotheses we sequenced a portion of the mitochon history of each lake (Fryer and lies, 1972). The lake drial UNA control region from six pairs of morphologi basins have arisen separately by a gradual lengthen cally similar taxa from Lakes Malawi and Tanganyika. -
Identification and Biology of Diplotaxodon, Rhamphochromis and Pallidochromis
190 Diplotaxodon, Rhamphochromis & Pallidochromis / Turner et al. Identification and Biology of Diplotaxodon, Rhamphochromis and Pallidochromis George F. Turner, Rosanna L. Robinson, Paul W. Shaw & Gary R. Carvalho Abstract Introduction We present preliminary morphological and mo- The genera Rhamphochromis Regan, 1922 and lecular taxonomic studies of the genera Rhampho- Diplotaxodon Trewavas, 1935 include the most chromis, Diplotaxodon and Pallidochromis, along with pelagic of Lake Malawi’s cichlids (Turner, 1996). notes on their identification, distribution and ecol- Pallidochromis Turner, 1994, a more benthic form, is ogy. We suggest that Rhamphochromis is comprised also considered in this chapter, as it appears mor- of eight to ten species: R. longiceps, R. woodi, R. phologically intermediate between Diplotaxodon macrophthalmus, R. esox, possibly R. ferox and four and Rhamphochromis (Turner 1994a). Rhampho- or five undescribed species. We suggest that R. chromis species are streamlined elongated predators lucius and R. brevis may be junior synonyms of R. of fish and zooplankton. They usually have large woodi. We also believe that Rhamphochromis teeth and jaws. Diplotaxodon comprises a heteroge- leptosoma and R. melanotus are junior synonyms of neous mix of small-toothed silvery species with R. esox. We consider that the two types of R. ferox upwardly-angled jaws. The genus includes zoo- are not conspecific and we designate a lectotype. planktivores and predators of small pelagic fish. However, we have not yet been able to positively The genus Rhamphochromis was described by identify this species from recent collections. Regan (1922), who took the type species as Diplotaxodon may contain anything from 11 to 22 or Rhamphochromis longiceps (Günther, 1864). -
Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa)
Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa/Niassa) by M.K. Oliver, Ph.D. ––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––– Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa/Niassa) by Michael K. Oliver, Ph.D. Peabody Museum of Natural History, Yale University Updated 24 June 2020 First posted June 1999 The cichlids of Lake Malawi constitute the largest vertebrate species flock and largest lacustrine fish fauna on earth. This list includes all cichlid species, and the few subspecies, that have been formally described and named. Many–several hundred–additional endemic cichlid species are known but still undescribed, and this fact must be considered in assessing the biodiversity of the lake. Recent estimates of the total size of the lake’s cichlid fauna, counting both described and known but undescribed species, range from 700–843 species (Turner et al., 2001; Snoeks, 2001; Konings, 2007) or even 1000 species (Konings 2016). Additional undescribed species are still frequently being discovered, particularly in previously unexplored isolated locations and in deep water. The entire Lake Malawi cichlid metaflock is composed of two, possibly separate, endemic assemblages, the “Hap” group and the Mbuna group. Neither has been convincingly shown to be monophyletic. Membership in one or the other, or nonendemic status, is indicated in the checklist below for each genus, as is the type species of each endemic genus. The classification and synonymies are primarily based on the Catalog of Fishes with a few deviations. All synonymized genera and species should now be listed under their senior synonym. Nearly all species are endemic to L. Malawi, in some cases extending also into the upper Shiré River including Lake Malombe and even into the middle Shiré. -
Limnological Study of Lake Tanganyika, Africa with Special Emphasis on Piscicultural Potentiality Lambert Niyoyitungiye
Limnological Study of Lake Tanganyika, Africa with Special Emphasis on Piscicultural Potentiality Lambert Niyoyitungiye To cite this version: Lambert Niyoyitungiye. Limnological Study of Lake Tanganyika, Africa with Special Emphasis on Piscicultural Potentiality. Biodiversity and Ecology. Assam University Silchar (Inde), 2019. English. tel-02536191 HAL Id: tel-02536191 https://hal.archives-ouvertes.fr/tel-02536191 Submitted on 9 Apr 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. “LIMNOLOGICAL STUDY OF LAKE TANGANYIKA, AFRICA WITH SPECIAL EMPHASIS ON PISCICULTURAL POTENTIALITY” A THESIS SUBMITTED TO ASSAM UNIVERSITY FOR PARTIAL FULFILLMENT OF THE REQUIREMENT FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN LIFE SCIENCE AND BIOINFORMATICS By Lambert Niyoyitungiye (Ph.D. Registration No.Ph.D/3038/2016) Department of Life Science and Bioinformatics School of Life Sciences Assam University Silchar - 788011 India Under the Supervision of Dr.Anirudha Giri from Assam University, Silchar & Co-Supervision of Prof. Bhanu Prakash Mishra from Mizoram University, Aizawl Defence date: 17 September, 2019 To Almighty and merciful God & To My beloved parents with love i MEMBERS OF EXAMINATION BOARD iv Contents Niyoyitungiye, 2019 CONTENTS Page Numbers CHAPTER-I INTRODUCTION .............................................................. 1-7 I.1 Background and Motivation of the Study ..........................................