Phytochemical Investigation of A

Total Page:16

File Type:pdf, Size:1020Kb

Phytochemical Investigation of A Phytochemical Investigation of a Traditional West African Ethnomedicinal Plant, Icacina trichantha BY Brian C Guo B.S., Northwestern University, 2010 M.S., Northwestern University, 2012 DISSERTATION Submitted as partial fulfillment of the requirements for the degree of Doctor of Philosophy in Pharmacognosy in the Graduate College of the University of Illinois at Chicago, 2020 Chicago, Illinois Defense Committee: Dr. Chun-Tao Che, Chair and Advisor Dr. Joanna E. Burdette Dr. Jeremy J. Johnson, Pharmacy Practice Dr. Gail B. Mahady Dr. Brian T. Murphy Dr. Duncan Wardrop, Chemistry DEDICATION I dedicate this to Chicago, the city that has meant so much to me. The city where my father came to continue his work in Traditional Chinese Medicine. The city where my immigrant parents met in a new country. The city where they settled and raised our family. The city where I fell in love with my best friend. The city that will always be with me. ii ACKNOWLEDGEMENTS My first acknowledgement is to my advisor and mentor, Dr. Chun-Tao Che. His guidance and support made me a better student of the world and the natural power that it holds. Under his tutelage, I have grown as a research scientist. Thanks to him, I can proudly consider myself a pharmacognosist. I would also like to thank my dissertation and preliminary examination committee members. Dr. Jeremy Johnson was a helpful advisor and always willing with his time to help my biological experiments. I am also thankful to him for accepting me as a rotational research student. Dr. Brian Murphy and Dr. Joanna Burdette were very passionate instructors and gave me much needed support early in my career. I would also like to thank Dr. Gail Mahady and Dr. Duncan Wardrop for kindly giving their time and advice towards this dissertation. I am particularly grateful to Dr. Alec Krunic for helpful guidance and support in my NMR experiments, as well as being a good friend. I would like to thank Dr. Ben Ramirez and Dr. David Lankin for their assistance with NMR acquisition and interpretation as well. Dr. Dejan Nikolic was a great teacher and friend who was incredibly helpful in mass spectrometry analysis. I would like to express my gratitude to the fellow members of the CT Che research group past and present. I am especially grateful to Dr. Monday M. Onakpa for establishing this international collaboration and without whom none of this work would be possible. I am also particularly grateful to Dr. Ming Zhao who was instrumental for teaching me the skills and techniques needed to study natural products. Dr. Karina Szymulanska-Ramamurthy was a great mentor and friend in my first years as a student. I am thankful to Dr. Zhenlong Wu for his assistance in ECD calculations and Dr. Junfei Zhou, a talented pharmacognosist who provided very helpful advice iii ACKNOWLEDGEMENTS (continued) and guidance. My other fellow lab members were amazing colleagues and friends, including, Dr. Jordan Gunn, Dr. Joshua Henkin, Dr. Bamisaye Oyawaluja, Dr. Xia Wu, Meng Sun, Isoo Youn, Aleksandra Gurgul, Dr. Sharna-kay Daley, Steven Lane, Tomasz Karwas, Samiya Papa, Kevin He, Isheng Hou, Nathan Brown, and Meghna Gill. I would like to thank Dr. Laura Sanchez for allowing access to her lab and mass spectrometry instruments and Valya Petukhova for assisting with training. I am also thankful to Dr. Guido Pauli and Dr. Jonathan Bisson for access and training to the Pauli lab’s resources. I am also grateful to all my fellow classmates and friends that made UIC such a welcoming place to work and study. I would like to thank the many members of the Department of Pharmaceutical Sciences and those associated with the Department for their help and assistance with this work, especially those that contributed their time and resources. I am appreciative for the organizational and logistical help readily given by Elizabeth Ryan. The collaboration with Dr. Katherine Warpeha and her group including Tiffany Wong and Kyo Wakasa was very productive and insightful into the potential of natural products as pesticides and herbicides in agriculture. I am thankful for the members of the Joanna Burdette lab for assisting with cytotoxicity assays including Wei-Lun Chen, Austin Czarnecki, and Brenna Kirkpatrick. I am also thankful to Jeremy Johnson lab member Bhaskar Vemu for assisting with colorectal and prostate cancer cytotoxicity assays. I am very grateful to Dr. Bernie Santarsiero for his assistance in acquiring and analyzing x-ray crystallographic data. Finally, I am thankful to my family and friends for their love and support through the years. The memories and experiences outside of the lab made the work and effort presented here that much more rewarding. iv ACKNOWLEDGEMENTS (continued) My research was supported by the Office of the Director, National Institutes of Health (OD) and National Center for Complementary and Integrative Health (NCCIH) (5T32AT007533) through a T32 pre-doctoral training fellowship and a Oscar Robert Oldberg Prize in Pharmaceutical Chemistry from the Department of Pharmaceutical Sciences in the College of Pharmacy at UIC. I would also like to thank the Pharmacology Industry Internships for PhD Students (PIIPS) Program for supporting my internship with Sirenas MD in San Diego, California. v CONTRIBUTION OF AUTHORS Chapter 1 is an original work by Brian Guo with editing provided by Dr. Chun-Tao Che. Chapter 2 is composed of a published manuscript (Guo, B., et al. J. Nat. Prod. 2016, 79 (7), 1815–1821) of which I am first author. Dr. Monday M. Onakpa assisted with plant material collection and identification. Dr. Ming Zhao and I carried out NMR acquisition and interpretation and writing of the manuscript. Drs. Xiao-Jun Huang and Xiao-Qi Zhang assisted with ECD calculations. Dr. Bernard D. Santarsiero assisted with acquiring and interpreting x-ray crystallographic data. Drs. Wei-Lun Chen, Steven M. Swanson, and Joanna E. Burdette assisted with antiproliferative assays against cancer cell lines. My mentor Dr. Chun-Tao Che assisted with revising of the final manuscript. Chapter 2 is also composed of a published manuscript (Guo, B. et al. Fitoterapia 104612 (2020), 144, 104612) for which I am first author as well and the primary generator of content. Dr. Ming Zhao assisted with NMR interpretation. Dr. Zhenlong Wu assisted with ECD calculations. Dr. Monday M. Onakpa assisted with plant material collection and identification. Dr. Joanna E. Burdette assisted with antiproliferative assays against cancer cell lines. My mentor Dr. Chun-Tao Che assisted with revising of the manuscript. Chapter 3 is composed of a published manuscript (Zhao, M.; Guo, B., et al. J. Nat. Prod. 2017, 80 (12), 3314–3318) of which I am a co-author. Tiffany Wong, Kyo Wakasa, and Dr. Katherine Warpeha assisted with anti-germination assays. The chapter is also composed of cytotoxicity data from a published manuscript (Guo, B., et al. J. Nat. Prod. 2016, 79 (7), 1815–1821) and unpublished biological activity data. Drs. Bhaskar Vemu and Jeremy J. Johnson assisted with antiproliferative assays against cancer cell lines. Chapter 4 is an original work by Brian Guo with editing provided by Dr. Chun-Tao Che. vi TABLE OF CONTENTS CHAPTER PAGE 1. Introduction to Natural Products and Icacina ...........................................................................1 1.1 Background .................................................................................................................2 1.1.1 Pharmacognosy & Phytochemistry .........................................................................2 1.1.2 Medicinal Plants and Botanicals for Drug Discovery..............................................3 1.1.3 African Traditional Medicine (TM) ........................................................................7 1.2 Literature Review ...................................................................................................... 10 1.2.1 Taxonomy of Icacina genus ................................................................................. 10 1.2.2 Morphological description of Icacina trichantha .................................................. 11 1.2.3 Ethnomedicinal use of Icacina species ................................................................. 14 1.2.4 Summary of scientific investigations .................................................................... 20 1.2.5 Chemical constituents .......................................................................................... 20 1.2.6 Biological activities of Icacina genus ................................................................... 32 1.3 Objectives .................................................................................................................. 45 2. Structure Elucidation of Pimarane Diterpenoids .................................................................... 48 2.1 Introduction ............................................................................................................... 49 2.2 Materials and Methods ............................................................................................... 50 2.2.1 General Experimental Procedures. ....................................................................... 50 2.2.2 Plant Material. .................................................................................................... 51 2.2.3 Extraction and Isolation. ................................................................................... 51 2.2.4 Single Crystal X-Ray Structure Determination ....................................................
Recommended publications
  • BIODIVERSITY CONSERVATION on the TIWI ISLANDS, NORTHERN TERRITORY: Part 1. Environments and Plants
    BIODIVERSITY CONSERVATION ON THE TIWI ISLANDS, NORTHERN TERRITORY: Part 1. Environments and plants Report prepared by John Woinarski, Kym Brennan, Ian Cowie, Raelee Kerrigan and Craig Hempel. Darwin, August 2003 Cover photo: Tall forests dominated by Darwin stringybark Eucalyptus tetrodonta, Darwin woollybutt E. miniata and Melville Island Bloodwood Corymbia nesophila are the principal landscape element across the Tiwi islands (photo: Craig Hempel). i SUMMARY The Tiwi Islands comprise two of Australia’s largest offshore islands - Bathurst (with an area of 1693 km 2) and Melville (5788 km 2) Islands. These are Aboriginal lands lying about 20 km to the north of Darwin, Northern Territory. The islands are of generally low relief with relatively simple geological patterning. They have the highest rainfall in the Northern Territory (to about 2000 mm annual average rainfall in the far north-west of Melville and north of Bathurst). The human population of about 2000 people lives mainly in the three towns of Nguiu, Milakapati and Pirlangimpi. Tall forests dominated by Eucalyptus miniata, E. tetrodonta, and Corymbia nesophila cover about 75% of the island area. These include the best developed eucalypt forests in the Northern Territory. The Tiwi Islands also include nearly 1300 rainforest patches, with floristic composition in many of these patches distinct from that of the Northern Territory mainland. Although the total extent of rainforest on the Tiwi Islands is small (around 160 km 2 ), at an NT level this makes up an unusually high proportion of the landscape and comprises between 6 and 15% of the total NT rainforest extent. The Tiwi Islands also include nearly 200 km 2 of “treeless plains”, a vegetation type largely restricted to these islands.
    [Show full text]
  • Characteristic Odor Components of Essential Oil from Scutellaria Laeteviolacea
    Journal of Oleo Science Copyright ©2013 by Japan Oil Chemists’ Society J. Oleo Sci. 62, (1) 51-56 (2013) Characteristic Odor Components of Essential Oil from Scutellaria laeteviolacea Mitsuo Miyazawa1* , Machi Nomura1, 2, Shinsuke Marumoto1 and Kiyoshige Mori2 1 ‌Department of Applied Chemistry, Faculty of Science and Engineering, Kinki University 3-4-1 Kowakae, Higashiosakashi, Osaka 577-8502, Japan 2 Ohsugi Pharmaceutical Co., Ltd, 1-1-2 Abeno-ku Tennoji-cho minami, Osaka 545-0002, Japan Abstract: The essential oils from aerial parts of Scutellaria laeteviolacea was analyzed by gas chromatography (GC) and gas chromatography-mass spectrometry (GC-MS). The characteristic odor components were also detected in the oil using gas chromatography-olfactometry (GC-O) analysis and aroma extraction dilution analysis (AEDA). As a result, 100 components (accounting for 99.11 %) of S. laeteviolacea, were identified. The major components of S. laeteviolacea oil were found to be 1-octen-3-ol (27.72 %), germacrene D (21.67 %),and β-caryophyllene (9.18 %). The GC-O and AEDA results showed that 1-octen-3-ol, germacrene D, germacrene B, and β-caryophyllene were the most characteristic odor components of the oil. These compounds are thought to contribute to the unique flavor of this plant. Key words: essential oil, Scutellaria laeteviolacea, 1-octen-3-ol, aroma extraction dilution analysis, relative flavor activity 1 INTRODUCTION particular, gas chromatography-olfactometry(GC-O)analy- Scutellaria laeteviolacea is a perennial plant belonging sis, including aroma extract dilution analysi(s AEDA)and to the family Lamiaceae. In recent years, this aromatic CharmAnalysis, has been used to identify the potent odor- plant of the aerial parts has been used as a herb in Japan.
    [Show full text]
  • Metabolic Changes of Aflatoxin B1 to Become an Active Carcinogen And
    ome Re un se m a rc Im h Immunome Research Carvajal-Moreno M, Immunome Res 2015, 11:2 ISSN: 1745-7580 DOI: 10.4172/1745-7580.10000104 Review Article Open Access Metabolic Changes of Aflatoxin B1 to become an Active Carcinogen and the Control of this Toxin Magda Carvajal-Moreno Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma de México. Ciudad Universitaria, Coyoacán, 04510 México DF Corresponding author: Magda Carvajal-Moreno, Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma de México. Ciudad Universitaria, Coyoacán, 04510 México DF, Tel: +52 55 5622 1332; E-mail: [email protected] Received date: November 07, 2015; Accepted date: December 18, 2015; Published date: December 22, 2015 Copyright: © 2015 Carvajal-Moreno M. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract Although aflatoxins are unavoidable toxins of food, many methods are available to control them, ranging from natural detoxifying methods to more sophisticated ones. The present review englobes the main characteristics of Aflatoxins as mutagens and carcinogens for humans, their physicochemical properties, the producing fungi, susceptible crops, effects and metabolism. In the metabolism of Aflatoxins the role of cytochromes and isoenzymes, epigenetics, glutathione-S-transferase enzymes, oncogenes and the role of aflatoxins
    [Show full text]
  • Sites of Botanical Significance Vol1 Part1
    Plant Species and Sites of Botanical Significance in the Southern Bioregions of the Northern Territory Volume 1: Significant Vascular Plants Part 1: Species of Significance Prepared By Matthew White, David Albrecht, Angus Duguid, Peter Latz & Mary Hamilton for the Arid Lands Environment Centre Plant Species and Sites of Botanical Significance in the Southern Bioregions of the Northern Territory Volume 1: Significant Vascular Plants Part 1: Species of Significance Matthew White 1 David Albrecht 2 Angus Duguid 2 Peter Latz 3 Mary Hamilton4 1. Consultant to the Arid Lands Environment Centre 2. Parks & Wildlife Commission of the Northern Territory 3. Parks & Wildlife Commission of the Northern Territory (retired) 4. Independent Contractor Arid Lands Environment Centre P.O. Box 2796, Alice Springs 0871 Ph: (08) 89522497; Fax (08) 89532988 December, 2000 ISBN 0 7245 27842 This report resulted from two projects: “Rare, restricted and threatened plants of the arid lands (D95/596)”; and “Identification of off-park waterholes and rare plants of central Australia (D95/597)”. These projects were carried out with the assistance of funds made available by the Commonwealth of Australia under the National Estate Grants Program. This volume should be cited as: White,M., Albrecht,D., Duguid,A., Latz,P., and Hamilton,M. (2000). Plant species and sites of botanical significance in the southern bioregions of the Northern Territory; volume 1: significant vascular plants. A report to the Australian Heritage Commission from the Arid Lands Environment Centre. Alice Springs, Northern Territory of Australia. Front cover photograph: Eremophila A90760 Arookara Range, by David Albrecht. Forward from the Convenor of the Arid Lands Environment Centre The Arid Lands Environment Centre is pleased to present this report on the current understanding of the status of rare and threatened plants in the southern NT, and a description of sites significant to their conservation, including waterholes.
    [Show full text]
  • Kenneth J. Wurdack 2,4 and Charles C. Davis
    American Journal of Botany 96(8): 1551–1570. 2009. M ALPIGHIALES PHYLOGENETICS: GAINING GROUND ON ONE OF THE MOST RECALCITRANT CLADES IN THE ANGIOSPERM TREE OF LIFE 1 Kenneth J. Wurdack 2,4 and Charles C. Davis3,4 2 Department of Botany, Smithsonian Institution, P.O. Box 37012 NMNH MRC-166, Washington, District of Columbia 20013-7012 USA; and 3 Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, Massachusetts 02138 USA The eudicot order Malpighiales contains ~16 000 species and is the most poorly resolved large rosid clade. To clarify phyloge- netic relationships in the order, we used maximum likelihood, Bayesian, and parsimony analyses of DNA sequence data from 13 gene regions, totaling 15 604 bp, and representing all three genomic compartments (i.e., plastid: atpB , matK , ndhF, and rbcL ; mitochondrial: ccmB , cob , matR , nad1B-C , nad6, and rps3; and nuclear: 18S rDNA, PHYC, and newly developed low-copy EMB2765 ). Our sampling of 190 taxa includes representatives from all families of Malpighiales. These data provide greatly in- creased support for the recent additions of Aneulophus , Bhesa , Centroplacus , Ploiarium , and Raffl esiaceae to Malpighiales; sister relations of Phyllanthaceae + Picrodendraceae, monophyly of Hypericaceae, and polyphyly of Clusiaceae. Oxalidales + Huaceae, followed by Celastrales are successive sisters to Malpighiales. Parasitic Raffl esiaceae, which produce the world’ s largest fl owers, are confi rmed as embedded within a paraphyletic Euphorbiaceae. Novel fi ndings show a well-supported placement of Ctenolopho- naceae with Erythroxylaceae + Rhizophoraceae, sister-group relationships of Bhesa + Centroplacus , and the exclusion of Medu- sandra from Malpighiales. New taxonomic circumscriptions include the addition of Bhesa to Centroplacaceae, Medusandra to Peridiscaceae (Saxifragales), Calophyllaceae applied to Clusiaceae subfamily Kielmeyeroideae, Peraceae applied to Euphorbi- aceae subfamily Peroideae, and Huaceae included in Oxalidales.
    [Show full text]
  • Computer-Aided Chemotaxonomy and Bioprospecting Study of Diterpenes of the Lamiaceae Family
    molecules Article Computer-Aided Chemotaxonomy and Bioprospecting Study of Diterpenes of the Lamiaceae Family Andreza Barbosa Silva Cavalcanti, Renata Priscila Costa Barros, Vicente Carlos de Oliveira Costa, Marcelo Sobral da Silva, Josean Fechine Tavares , Luciana Scotti and Marcus Tullius Scotti * Post-Graduate Program in Natural Synthetic Bioactive Products, Federal University of Paraiba, João Pessoa 58051-900, Paraíba, Brazil; [email protected] (A.B.S.C.); [email protected] (R.P.C.B.); [email protected] (V.C.d.O.C.); [email protected] (M.S.d.S.); [email protected] (J.F.T.); [email protected] (L.S.) * Correspondence: [email protected]; Tel.: +55-83-998690415 Received: 4 October 2019; Accepted: 27 October 2019; Published: 30 October 2019 Abstract: Lamiaceae is one of the largest families of angiosperms and is classified into 12 subfamilies that are composed of 295 genera and 7775 species. It presents a variety of secondary metabolites such as diterpenes that are commonly found in their species, and some of them are known to be chemotaxonomic markers. The aim of this work was to construct a database of diterpenes and to use it to perform a chemotaxonomic analysis among the subfamilies of Lamiaceae, using molecular descriptors and self-organizing maps (SOMs). The 4115 different diterpenes corresponding to 6386 botanical occurrences, which are distributed in eight subfamilies, 66 genera, 639 different species and 4880 geographical locations, were added to SistematX. Molecular descriptors of diterpenes and their respective botanical occurrences were used to generate the SOMs. In all obtained maps, a match rate higher than 80% was observed, demonstrating a separation of the Lamiaceae subfamilies, corroborating with the morphological and molecular data proposed by Li et al.
    [Show full text]
  • A Survey of Tricolpate (Eudicot) Phylogenetic Relationships1
    American Journal of Botany 91(10): 1627±1644. 2004. A SURVEY OF TRICOLPATE (EUDICOT) PHYLOGENETIC RELATIONSHIPS1 WALTER S. JUDD2,4 AND RICHARD G. OLMSTEAD3 2Department of Botany, University of Florida, Gainesville, Florida 32611 USA; and 3Department of Biology, University of Washington, Seattle, Washington 98195 USA The phylogenetic structure of the tricolpate clade (or eudicots) is presented through a survey of their major subclades, each of which is brie¯y characterized. The tricolpate clade was ®rst recognized in 1989 and has received extensive phylogenetic study. Its major subclades, recognized at ordinal and familial ranks, are now apparent. Ordinal and many other suprafamilial clades are brie¯y diag- nosed, i.e., the putative phenotypic synapomorphies for each major clade of tricolpates are listed, and the support for the monophyly of each clade is assessed, mainly through citation of the pertinent molecular phylogenetic literature. The classi®cation of the Angiosperm Phylogeny Group (APG II) expresses the current state of our knowledge of phylogenetic relationships among tricolpates, and many of the major tricolpate clades can be diagnosed morphologically. Key words: angiosperms; eudicots; tricolpates. Angiosperms traditionally have been divided into two pri- 1992a; Chase et al., 1993; Doyle et al., 1994; Soltis et al., mary groups based on the presence of a single cotyledon 1997, 2000, 2003; KaÈllersjoÈ et al., 1998; Nandi et al., 1998; (monocotyledons, monocots) or two cotyledons (dicotyledons, Hoot et al., 1999; Savolainen et al., 2000a, b; Hilu et al., 2003; dicots). A series of additional diagnostic traits made this di- Zanis et al., 2003; Kim et al., 2004). This clade was ®rst called vision useful and has accounted for the long recognition of the tricolpates (Donoghue and Doyle, 1989), but the name these groups in ¯owering plant classi®cations.
    [Show full text]
  • Male Meiotic Studies in 29 Species of Lamiaceae from Sirmaur District of Himachal Pradesh, India
    © 2018 The Japan Mendel Society Cytologia 83(3): 235–243 Male Meiotic Studies in 29 Species of Lamiaceae from Sirmaur District of Himachal Pradesh, India Vijay Singh1, Raghbir Chand Gupta2, Kusum Sharma3, Vikas Sharma4, Manjul Sharma1 and Kuljit Kaur1* 1 Department of Botany, Mata Gujri College, Fatehgarh Sahib, Punjab140407, India 2 Department of Botany, Punjabi University, Patiala, Punjab 147002, India 3 Department of Botany, Shoolini Institute of Life Sciences and Business Management, Solan, Himachal Pradesh 173212, India 4 Department of Botany, DAV University, Jalandhar144012, India Received January 5, 2018; accepted March 2, 2018 Summary Lamiaceae is a requisite depository of many important medicinal herbs, distributed all over the world. The detailed meiotic studies, firstly are helpful in solving taxonomic and evolutionary enigmas and sec- ondly provide best chemotypes for further exploration and conservatory purposes. Male meiosis in 29 species of 54 populations belonging to the 18 genera of Lamiaceae has been undertaken for the first time from Sirmaur district of Himachal Pradesh falling in Western Himalayas. Euploid cytotypes are reported in Ajuga parviflora (n=8x=32), Nepeta eryostachys (n=4x=18) and N. graciliflora (n=4x=18). Besides, B-chromosomes in previ- ously known cytotypes of five species, A. bracteosa (n=32+0-2B), Leucas lanata (n=11+0-1B), Lycopus euro- peus (n=11+0-1B), Phlomis bracteosa (n=11+0-1B) and Vitex negundo (n=16+0-1B), are reported for the first time. A substantial amount of meiotic abnormalities in the form of chromatin stickiness, cytomixis, chromatin bridges and laggards are reported in the presently worked out population that leads to the high variability in the microsporogenesis, pollen grain size heterogeneity and ultimately, reduce pollen viability.
    [Show full text]
  • Towards Understanding Mode-Of-Action of Traditional Medicines by Using in Silico Target Prediction
    TOWARDS UNDERSTANDING MODE-OF-ACTION OF TRADITIONAL MEDICINES BY USING IN SILICO TARGET PREDICTION Siti Zuraidah Binti Mohamad Zobir Hughes Hall April 2017 This dissertation is submitted for the degree of Doctor of Philosophy of the University of Cambridge Supervisor: Dr Andreas Bender Name: SITI ZURAIDAH BINTI MOHAMAD ZOBIR Title: IN SILICO TARGET PREDICTION: TOWARDS UNDERSTANDING MODE-OF-ACTION OF TRADITIONAL MEDICINES Abstract Traditional medicines (TM) have been used for centuries to treat illnesses, but in many cases their modes-of-action (MOAs) remain unclear. Given the increasing data of chemical ingredients of traditional medicines and the availability of large-scale bioactivity data linking chemical structures to activities against protein targets, we are now in a position to propose computational hypotheses for the MOAs using in silico target prediction. The MOAs were established from supporting literature. The in silico target prediction, which is based on the “Molecular Similarity Principle”, was modelled via two models: a Naïve Bayes Classifier and a Random Forest Classifier. Chapter 2 discovered the relationship of 46 traditional Chinese medicine (TCM) therapeutic action subclasses by mapping them into a dendrogram using the predicted targets. Overall, the most frequent top three enriched targets/pathways were immune-related targets such as tyrosine-protein phosphatase non-receptor type 2 (PTPN2) and digestive system such as mineral absorption. Two major protein families, G-protein coupled receptor (GPCR), and protein kinase family contributed to the diversity of the bioactivity space, while digestive system was consistently annotated pathway motif. Chapter 3 compared the chemical and bioactivity space of 97 anti-cancer plants’ compounds of TCM, Ayurveda and Malay traditional medicine.
    [Show full text]
  • Scutellaria Barbata in Traditional Chinese Medicine and Western Research Geyang Tao University of Connecticut - Storrs, [email protected]
    University of Connecticut OpenCommons@UConn Honors Scholar Theses Honors Scholar Program Spring 4-22-2016 Current Therapeutic Role and Medicinal Potential of Scutellaria barbata in Traditional Chinese Medicine and Western Research Geyang Tao University of Connecticut - Storrs, [email protected] Marcy J. Balunas University of Connecticut - Storrs, [email protected] Follow this and additional works at: https://opencommons.uconn.edu/srhonors_theses Part of the Alternative and Complementary Medicine Commons, Integrative Medicine Commons, Natural Products Chemistry and Pharmacognosy Commons, and the Oncology Commons Recommended Citation Tao, Geyang and Balunas, Marcy J., "Current Therapeutic Role and Medicinal Potential of Scutellaria barbata in Traditional Chinese Medicine and Western Research" (2016). Honors Scholar Theses. 481. https://opencommons.uconn.edu/srhonors_theses/481 Current Therapeutic Role and Medicinal Potential of Scutellaria barbata in Traditional Chinese Medicine and Western Research Geyang Tao Advisor, Marcy J. Balunas, Ph.D. Department of Pharmaceutical Sciences School of Pharmacy Honors Program University of Connecticut, Storrs, CT 06269 Abstract Ethnopharmacological relevance: Scutellaria barbata is a common herb in Traditional Chinese Medicine (TCM) most often used to treat cancer. S. barbata has been found to exhibit efficacy both in vitro and in vivo on a variety of cancer types. Similarly encouraging results have been shown in patients with metastatic breast cancer from Phase Ia and Ib clinical trials. This study aims to elucidate the current use of S. barbata by TCM practitioners and in current Western research. Materials and Methods: Semi-structured interviews were conducted with fifteen TCM practitioners in Beijing and Nanjing, China to understand their clinical use of S. barbata.
    [Show full text]
  • From Scutellaria Barbata to BZL101 in Cancer Patients
    Review Natural Product Communications Volume 14(10): 1–12 From Scutellaria barbata to BZL101 in © The Author(s) 2019 Article reuse guidelines: sagepub. com/ journals- permissions Cancer Patients: Phytochemistry, DOI: 10.1177/1934578X19880645 Pharmacology, and Clinical Evidence journals. sagepub. com/ home/ npx Jiayu Gao1, Weiping Yin1, and Olivia Corcoran2 Abstract Scutellaria barbata D.Don is a popular Chinese medicinal plant documented to treat cancer patients in traditional Chinese medicine (TCM). A botanical new investigational drug for breast cancer BZL101 (FDA IDN# 59521) was previously developed in the United States from the aqueous extract of the aerial parts from S. barbata. The early phase 1A and 1B clinical trials show its favor- able toxicity profiles, good clinical tolerance, and promising efficacy for patients with metastatic breast cancer. To further evidence the phytopharmacology research, drug development, and anticancer use of this herb, a systematic literature review was performed herein on the phytochemistry, pharmacology, and specifically anticancer clinical evidence. A systematic review of the literature on phytochemical and pharmacological properties of the plant related to cancer treatment employed several web-based scientific da- tabases including Wanfang (Chinese), Pubmed, Web of Science, and Elsevier. Key words included Scutellaria barbata, Ban Zhi Lian, cancer, and tumor. Based on critical quality criteria, only 8 out of 69 reports related to clinical studies of cancer patients in China. This review covered the available literature up to July 2019. The anticancer effects of S. barbata can be explained by the presence of various flavonoids and diterpenoids alkaloids. The underlying mechanisms are primarily summarized as cyclin/cyclin-dependent kinase (CDK)-modulated cell cycle arrest and mitochondria-mediated apoptotic death.
    [Show full text]
  • Bremer Et Al. 2001
    Plant Syst. Evol. 229: 137±169 <2001) A phylogenetic analysis of 100+ genera and 50+ families of euasterids based on morphological and molecular data with notes on possible higher level morphological synapomorphies K. Bremer1, A. Backlund2, B. Sennblad3, U. Swenson4, K. Andreasen5, M. Hjertson1, J. Lundberg1, M. Backlund1, and B. Bremer1 1Department of Systematic Botany, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden 2Department of Medicinal Chemistry, Uppsala University, Uppsala, Sweden 3Stockholm Bioinformatics Center, Stockholm University, Stockholm, Sweden 4Department of Botany, University of Stockholm, Stockholm, Sweden 5Molecular Systematics Laboratory, Swedish Museum of Natural History, Stockholm, Sweden Received August 28, 2000 Accepted August 7, 2001 Abstract. A data matrix of 143 morphological and epigynous ¯owers, ``late sympetaly'' with distinct chemical characters for 142 genera of euasterids petal primordia, free stamen ®laments, and indehi- according to the APG system was compiled and scent fruits. It is unclear which of these characters complemented with rbcL and ndhF sequences for represent synapomorphies and symplesiomorphies most of the genera. The data were subjected to for the two groups, respectively, and there are parsimony analysis and support was assessed by numerous expections to be interpreted as reversals bootstrapping. Strict consensus trees from analyses and parallelisms. of morphology alone and morphology + rbcL+ ndhF are presented. The morphological data re- Key words: Angiosperms, asterids, euasterids, cover several groups supported by molecular data Asteridae, Apiales, Aquifoliales, Asterales, but at the level of orders and above relationships Dipsacales, Garryales, Gentianales, Lamiales, are only super®cially in agreement with molecular Solanales, Adoxaceae. Cladistics, phylogeny, studies. The analyses provide support for mono- morphology, rbcL, ndhF.
    [Show full text]