ERICA Brooks - Final Biological Opinion 2
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Working Copy of Thesis
MACROINVERTEBRATE STRUCTURE AND DRIFT IN THE BLANCO RIVER: A KARST TEXAS STREAM SUBJECT TO HYDROLOGIC VARIABILITY THESIS Presented to the Graduate Council of Texas State University-San Marcos in Partial Fulfillment of the Requirements for the Degree Master of SCIENCE by David Pendergrass, B.A. San Marcos, Texas December 2006 MACROINVERTEBRATE STRUCTURE AND DRIFT IN THE BLANCO RIVER: A KARST TEXAS STREAM SUBJECT TO HYDROLOGIC VARIABILITY Committee Members Approved: __________________________________ Dr. Timothy H. Bonner, Chair __________________________________ Dr. Thomas L. Arsuffi __________________________________ Dr. Alan W. Groeger _____________________________________ Dr. Glenn Longley Approved: ________________________ Dr. J. Michael Willoughby Dean of the Graduate College ACKNOWLEDGEMENTS Jesus is the author of the Blanco River and the ultimate source of the pleasure and success I have enjoyed in this study. Thank you for giving me this opportunity and teaching me joy in every circumstance. My sincere gratitude goes to my professors who were unrelenting in their desire to see me produce quality work. Casey Williams, thank you for the mentoring and friendship. Pete Diaz, Sarah Frey, Brad Caston and the many others who offered field and lab time: my sincerest thanks. The Nature Conservancy, Texas State University-San Marcos and private donors paved the way for this research and put food on my table. Finally, to my wife Krista: you bore the weight of this thesis too. I knew when we married that you loved me but your persistent support these last three years has raised my understanding of your love to unimaginable heights. This manuscript was submitted on November 11, 2006. iii TABLE OF CONTENTS Page ACKNOWLEDGEMENTS.............................................................................................. -
Docket No. FWS-R2-ES-2012-0082]
This document is scheduled to be published in the Federal Register on 10/19/2012 and available online at http://federalregister.gov/a/2012-25578, and on FDsys.gov 1 DEPARTMENT OF THE INTERIOR Fish and Wildlife Service 50 CFR Part 17 [Docket No. FWS-R2-ES-2012-0082] [4500030114] RIN 1018-AY20 Endangered and Threatened Wildlife and Plants; Proposed Revision of Critical Habitat for the Comal Springs Dryopid Beetle, Comal Springs Riffle Beetle, and Peck’s Cave Amphipod AGENCY: Fish and Wildlife Service, Interior. ACTION: Proposed rule. SUMMARY: We, the U.S. Fish and Wildlife Service (Service), propose to revise 2 designation of critical habitat for the Comal Springs dryopid beetle (Stygoparnus comalensis), Comal Springs riffle beetle (Heterelmis comalensis), and Peck’s cave amphipod (Stygobromus pecki), under the Endangered Species Act of 1973, as amended (Act). In total, approximately 169 acres (68 hectares) are being proposed for revised critical habitat. The proposed revision of critical habitat is located in Comal and Hays Counties, Texas. DATES: We will accept comments received or postmarked on or before [INSERT DATE 60 DAYS AFTER DATE OF PUBLICATION IN THE FEDERAL REGISTER]. Comments submitted electronically using the Federal eRulemaking Portal (see ADDRESSES section, below) must be received by 11:59 p.m. Eastern Time on the closing date. We must receive requests for public hearings, in writing, at the address shown in FOR FURTHER INFORMATION CONTACT by [INSERT DATE 45 DAYS AFTER DATE OF PUBLICATION IN THE FEDERAL REGISTER]. ADDRESSES: You may submit comments by one of the following methods: (1) Electronically: Go to the Federal eRulemaking Portal: http://www.regulations.gov. -
DRAFT 8/8/2013 Updates at Chapter 40 -- Karstology
Chapter 40 -- Karstology Characterizing the mechanism of cavern accretion as "force" tends to suggest catastrophic attack, not a process of subtle persistence. Publicity for Ohio's Olentangy Indian Caverns illustrates the misconception. Formed millions of years ago by the tremendous force of an underground river cutting through solid limestone rock, the Olentangy Indian Caverns. There was no tremendous event millions of years ago; it's been dissolution at a rate barely discernable, century to century. Another rendition of karst stages, this time in elevation, as opposed to cross-section. Juvenile Youthful Mature Complex Extreme 594 DRAFT 8/8/2013 Updates at http://www.unm.edu/~rheggen/UndergroundRivers.html Chapter 40 -- Karstology It may not be the water, per se, but its withdrawal that initiates catastrophic change in conduit cross-section. The figure illustrates stress lines around natural cavities in limestone. Left: Distribution around water-filled void below water table Right: Distribution around air-filled void after lowering water table. Natural Bridges and Tunnels Natural bridges begin as subterranean conduits, but subsequent collapse has left only a remnant of the original roof. "Men have risked their lives trying to locate the meanderings of this stream, but have been unsuccessful." Virginia's Natural Bridge, 65 meters above today's creek bed. George Washington is said to have surveyed Natural Bridge, though he made no mention it in his journals. More certain is that Thomas Jefferson purchased "the most sublime of nature's works," in his words, from King George III. Herman Melville alluded to the formation in describing Moby Dick, But soon the fore part of him slowly rose from the water; for an instant his whole marbleized body formed a high arch, like Virginia's Natural Bridge. -
United States Department of the Interior
United States Department of the Interior FISH AND WILDLIFE SERVICE 10711 Burnet Road, Suite 200 Austin, Texas 78758 512 490-0057 FAX 490-0974 In Reply Refer to: Consultation 02ETAU00-2016-F-0216 AUG 15 2016 Stephen Brooks Chief, Regulatory Branch U.S. Army Corps of Engineers P.O. Box 17300 Fort Worth, Texas 76102-0300 Dear Mr. Brooks: This transmits the U.S. Fish and Wildlife Service's (Service) biological opinion for the U.S. Army Corps of Engineers (USACE) proposed authorization under section 404 of the Clean Water Act (CWA)(33 U.S.C. 1251 – 1376) for activities that are part of the development of the New Braunfels Utilities (NBU) Comal Springs Conservation Center (CSCC) in New Braunfels, Comal County, Texas. The USACE is proposing authorization of partial removal of the concrete spring cap at the head of Comal Springs spring run 4 under a CWA Nationwide Permit. The spring cap modification is part of an 18-acre project to replace the NBU service yard with an educational facility focused on conservation. The NBU proposes to build the CSCC on its property near Landa Lake, Comal Springs spring run 4, and Blieders Creek. In accordance with section 7 of the Endangered Species Act of 1973, as amended (16 U.S.C. 1531 et seq.)(Act), the USACE has determined this project may affect four listed endangered species: Peck’s cave amphipod (Stygobromus comalensis), Comal Springs dryopid beetle (Stygoparnus comalensis), Comal Springs riffle beetle (Heterelmis comalensis), and fountain darter (Etheostoma fonticola). In addition, the USACE has determined the project may affect federally designated critical habitat of Peck’s cave amphipod, Comal Springs dryopid beetle, and Comal Springs riffle beetle. -
Draft Environmental Impact Statement
DES #12-29 DRAFT ENVIRONMENTAL IMPACT STATEMENT Edwards Aquifer Recovery Implementation Program Habitat Conservation Plan U.S. Department of the Interior Fish and Wildlife Service June 2012 DES #12-29 DRAFT ENVIRONMENTAL IMPACT STATEMENT Edwards Aquifer Recovery Implementation Program Habitat Conservation Plan U.S. Department of the Interior U.S. Fish and Wildlife Service June 2012 DES #12-29 Cover Sheet COVER SHEET Draft Environmental Impact Statement (DEIS) for Authorization of Incidental Take and Implementation of the Habitat Conservation Plan Developed by the Edwards Aquifer Recovery Implementation Program Lead Agency: U.S. Department of the Interior United States Fish and Wildlife Service Type of Statement: Draft Environmental Impact Statement Responsible Official: Adam Zerrenner Field Supervisor U.S. Fish and Wildlife Service Austin Ecological Services Field Office 10711 Burnet Road, Suite 200 Austin, Texas Tel: 512-490-0057 For Information: Tanya Sommer Branch Chief U.S. Fish and Wildlife Service Austin Ecological Services Field Office 10711 Burnet Road, Suite 200 Austin, Texas Tel: 512-490-0057 The U.S. Fish and Wildlife Service (Service) received an application from the Edwards Aquifer Authority (EAA), San Antonio Water System, City of New Braunfels, City of San Marcos, and Texas State University for a permit to take certain federally protected species incidental to otherwise lawful activities pursuant to Section 10(a)(1)(B) of the Endangered Species Act of 1973, as amended (ESA). This Draft Environmental Impact Statement (DEIS) addresses the potential environmental consequences that may occur if the application is approved and the HCP is implemented. The Service is the lead agency under the National Environmental Policy Act (NEPA). -
Amphipoda: Crangonyctidae)
bs_bs_banner Zoological Journal of the Linnean Society, 2013, 167, 227–242. With 8 figures Cryptic diversity within and amongst spring-associated Stygobromus amphipods (Amphipoda: Crangonyctidae) JOSHUA Z. ETHRIDGE1*, J. RANDY GIBSON2 and CHRIS C. NICE1 1Department of Biology, Texas State University, 601 University Drive, San Marcos, TX 78666, USA 2San Marcos US Fish and Wildlife Service, San Marcos, TX, USA Received 3 May 2012; revised 14 September 2012; accepted for publication 24 September 2012 Multiple species of troglomorphic, spring-associated Stygobromus amphipods, including the endangered, narrow- range endemic Stygobromus pecki, occupy sites in the Edwards Plateau region of North America. Given the prevalence of cryptic diversity observed in disparate subterranean, animal taxa, we evaluated geographical genetic variation and tested whether Stygobromus contained undetected biodiversity. Nominal Stygobromus taxa were treated as hypotheses and tested with mitochondrial sequence cytochrome oxidase C subunit 1, nuclear sequence (internal transcribed spacer region 1), and AFLP data. Stygobromus pecki population structure and diversity was characterized and compared with congeners. For several Stygobromus species, the nominal taxonomy conflicted with molecular genetic data and there was strong evidence of significant cryptic diversity. Whereas S. pecki genetic diversity was similar to that of congeners, mitochondrial data identified two significantly diverged but sympatric clades. AFLP data for S. pecki indicated relatively recent and ongoing gene flow in the nuclear genome. These data for S. pecki suggest either a substantial history of isolation followed by current sympatry and ongoing admixture, or a protracted period of extremely large effective population size. This study demonstrates that Edwards Plateau Stygobromus are a complex, genetically diverse group with substantially more diversity than currently recognized. -
Hays County Regional Habitat Conservation Plan Final HCP
APPENDIX A Mapping Potential Golden-cheeked Warbler Breeding Habitat Using Remotely Sensed Forest Canopy Cover Data Loomis Partners, Inc. (2008) Hays County Regional Habitat Conservation Plan Mapping Potential Golden-cheeked Warbler Breeding Habitat Using Remotely Sensed Forest Canopy Cover Data Prepared for: County of Hays 111 E. San Antonio Street San Marcos, Texas 78666 Prepared by: ENGINEERING, LAND SURVEYING & ENVIRONMENTAL CONSULTING 3101 Bee Cave Road, Suite 100 Austin, TX 78746 512/327-1180 FAX: 512/327-4062 LAI Proj. No. 051001 August 12, 2008 Mapping Potential GCW Habitat LAI Proj. No. 051001 Table of Contents 1.0 INTRODUCTION..................................................................................................................................1 1.1 PURPOSE AND OBJECTIVES........................................................................................................................1 1.2 GOLDEN-CHEEKED WARBLER...................................................................................................................1 1.3 NATIONAL LAND COVER DATABASE 2001 ...............................................................................................3 2.0 METHODS .............................................................................................................................................3 2.1 HABITAT MAPPING ...................................................................................................................................3 2.2 PROBABILITY OF OCCUPANCY ANALYSIS .................................................................................................5 -
Describing Species
DESCRIBING SPECIES Practical Taxonomic Procedure for Biologists Judith E. Winston COLUMBIA UNIVERSITY PRESS NEW YORK Columbia University Press Publishers Since 1893 New York Chichester, West Sussex Copyright © 1999 Columbia University Press All rights reserved Library of Congress Cataloging-in-Publication Data © Winston, Judith E. Describing species : practical taxonomic procedure for biologists / Judith E. Winston, p. cm. Includes bibliographical references and index. ISBN 0-231-06824-7 (alk. paper)—0-231-06825-5 (pbk.: alk. paper) 1. Biology—Classification. 2. Species. I. Title. QH83.W57 1999 570'.1'2—dc21 99-14019 Casebound editions of Columbia University Press books are printed on permanent and durable acid-free paper. Printed in the United States of America c 10 98765432 p 10 98765432 The Far Side by Gary Larson "I'm one of those species they describe as 'awkward on land." Gary Larson cartoon celebrates species description, an important and still unfinished aspect of taxonomy. THE FAR SIDE © 1988 FARWORKS, INC. Used by permission. All rights reserved. Universal Press Syndicate DESCRIBING SPECIES For my daughter, Eliza, who has grown up (andput up) with this book Contents List of Illustrations xiii List of Tables xvii Preface xix Part One: Introduction 1 CHAPTER 1. INTRODUCTION 3 Describing the Living World 3 Why Is Species Description Necessary? 4 How New Species Are Described 8 Scope and Organization of This Book 12 The Pleasures of Systematics 14 Sources CHAPTER 2. BIOLOGICAL NOMENCLATURE 19 Humans as Taxonomists 19 Biological Nomenclature 21 Folk Taxonomy 23 Binomial Nomenclature 25 Development of Codes of Nomenclature 26 The Current Codes of Nomenclature 50 Future of the Codes 36 Sources 39 Part Two: Recognizing Species 41 CHAPTER 3. -
United States Department of the Interior FISH and WILDLIFE SERVICE 10711 Burnet Road, Suite 200 Austin, Texas 78758 512490-0057 FAX 490-0974
United States Department of the Interior FISH AND WILDLIFE SERVICE 10711 Burnet Road, Suite 200 Austin, Texas 78758 512490-0057 FAX 490-0974 Memorandum To: Regional Director, Region 2, Albuquerque, New Mexico ThrOUgh:/~sistant Regional Director, Ecological Services, Region 2, Albuquerque, New Mexico From: Field Supervisor, Austin Ecological Services Field Office, Austin, Te as Subject: Biological and Conference Opinions for the Edwards Aquifer Recovery Implementation Program Habitat Conservation Plan - Permit TE-63663A-0 (Consultation No. 214S0-201O-F-OllO) Enclosed are the biological and conference opinions for the final Edwards Aquifer Recovery Implementation Program (EARlP) Habitat Conservation Plan (HCP) that describes actions the Applicants have proposed to avoid, minimize, and mitigate adverse effects to the endangered Texas wild-rice (Zizania texana), Comal Springs dryopid beetle (Stygoparnus comalensis), Comal Springs riffle beetle (Heterelmis comalensis), Peck's Cave amphipod (Stygobromus pecki), fountain darter (Etheostomafonticola), San Marcos gambusia (Gambusia georgei), Texas blind salamander (Typhlomolge [=EwyceaJ rathbuni), the threatened San Marcos salamander (Eurycea nana), and the non-listed Texas cave diving beetle (Haideoporus texanus, also referred to as the Edwards Aquifer diving beetle), Texas troglobitic water slater (Lirceolus smithii), and Comal Springs salamander (Eurycea sp.) over a period of IS-years. We appreciate your staffs assistance throughout this consultation. If you have any questions regarding this biological opinion, please contact Tanya Sommer at SI2-490-00S7, extension 222. The biological opinion is based on the EARIP HCP dated December 2011 and the associated Enviromnental Impact Statement dated June 2012 pursuant to the National Enviromnental Policy Act of 1969; U.S. Fish and Wildlife Service (Service) files; discussions with species experts; published and un-published literature on the species of concern and related impacts; and other sources of information available to the Service. -
Designation of Critical Habitat for the Peck's Cave Amphipod, Comal
Tuesday, July 17, 2007 Part III Department of the Interior Fish and Wildlife Service 50 CFR Part 17 Endangered and Threatened Wildlife and Plants; Designation of Critical Habitat for the Peck’s Cave Amphipod, Comal Springs Dryopid Beetle, and Comal Springs Riffle Beetle; Final Rule VerDate Aug<31>2005 15:16 Jul 16, 2007 Jkt 211001 PO 00000 Frm 00001 Fmt 4717 Sfmt 4717 E:\FR\FM\17JYR3.SGM 17JYR3 rfrederick on PROD1PC67 with RULES3 39248 Federal Register / Vol. 72, No. 136 / Tuesday, July 17, 2007 / Rules and Regulations DEPARTMENT OF THE INTERIOR Comal County, Texas. The Comal second) (Fahlquist and Slattery 1997, p. Springs dryopid beetle is a subterranean 1; Slattery and Fahlquist 1997, p. 1). Fish and Wildlife Service insect with vestigial (poorly developed, Both spring systems emerge as a series non-functional) eyes. The species has of spring outlets along the Balcones 50 CFR Part 17 been found in two spring systems, fault that follows the edge of the RIN 1018–AU75 Comal Springs and Fern Bank Springs, Edwards Plateau in Texas. Fern Bank that are located in Comal and Hays Springs and Hueco Springs have Endangered and Threatened Wildlife Counties, respectively. The Comal considerably smaller flows and consist and Plants; Designation of Critical Springs riffle beetle is an aquatic insect of one main spring with several satellite Habitat for the Peck’s Cave Amphipod, that is found in and primarily restricted springs or seep areas. Comal Springs Dryopid Beetle, and to surface water associated with Comal The four spring systems designated Comal Springs Riffle Beetle Springs in Comal County and with San for critical habitat are characterized by Marcos Springs in Hays County. -
Metabolic Responses to Long-Term Food Deprivation in Subterranean and Surface Amphipods
A peer-reviewed open-access journal Subterranean Biology 33: 1–15 (2020)Metabolic responses to food deprivation in amphipods 1 doi: 10.3897/subtbiol.33.48483 RESEARCH ARTICLE Subterranean Published by http://subtbiol.pensoft.net The International Society Biology for Subterranean Biology Metabolic responses to long-term food deprivation in subterranean and surface amphipods Parvathi Nair1, Mar Huertas1, Weston H. Nowlin1 1 Department of Biology, Texas State University, San Marcos, Texas, 78666, USA Corresponding author: Parvathi Nair ([email protected]) Academic editor: O. T. Moldovan | Received 14 November 2019 | Accepted 22 December 2019 | Published 13 January 2020 http://zoobank.org/52DC7C52-42FC-42BD-9993-585331E4A60B Citation: Nair P, Huertas M, Nowlin WH (2020) Metabolic responses to long-term food deprivation in subterranean and surface amphipods. Subterranean Biology 33: 1–15. https://doi.org/10.3897/subtbiol.33.48483 Abstract A long-standing hypothesis in subterranean biology posits that organisms living in poor resource subsur- face habitats can withstand long periods of bioenergetic shortages due to an innate reduced metabolic rate when compared to their epigean counterparts. However, previous studies have proposed that caves with ample energy resources may not evolve organisms with reduced metabolic rate. The equivocal nature of previous findings suggests that there is a need to compare food deprivation responses of subterranean and surface species in order to elucidate whether there are widespread adaptations to low energy systems in subterranean taxa. The purpose of the study was to examine patterns in basal metabolism and the effects of food deprivation in closely related subterranean- and epigean- amphipods, Stygobromus pecki and Synurella sp. -
Molecular Phylogenetics Supports the Ancient Laurasian Origin of Old Limnic Crangonyctid Amphipods
Organisms Diversity & Evolution (2019) 19:191–207 https://doi.org/10.1007/s13127-019-00401-7 ORIGINAL ARTICLE Adrift across tectonic plates: molecular phylogenetics supports the ancient Laurasian origin of old limnic crangonyctid amphipods Denis Copilaş-Ciocianu1,2 & Dmitry Sidorov3 & Andrey Gontcharov3 Received: 24 October 2018 /Accepted: 6 March 2019 /Published online: 22 March 2019 # Gesellschaft für Biologische Systematik 2019, corrected publication 2019 Abstract Crangonyctidae is a speciose and almost exclusively freshwater Holarctic family of amphipod crustaceans. Its members inhabit groundwater as well as epigean biotopes with groundwater connections, and often exhibit endemic, relict distributions. Therefore, it has been proposed that this poorly dispersing, yet intercontinentally distributed family must have ancient Mesozoic origins. Here, we test the hypothesis that Crangonyctidae originated before the final break-up of Laurasia at the end of the Cretaceous. We used molecular phylogenetic analyses based on mitochondrial and nuclear markers and incorporated six out of the seven recognized genera. We calculated divergence times using a novel calibration scheme based exclusively on fossils and, for comparison, also applied substitution rates previously inferred for other arthropods. Our results indicate that crangonyctids originated during the Early Cretaceous in a northerly temperate area comprising nowadays North America and Europe, supporting the Laurasian origin hypothesis. Moreover, high latitude lineages were found to be generally older than the ones at lower latitudes, further supporting the boreal origin of the group and its relict biogeography. The estimated substitution rate of 1.773% Ma−1 for the COI marker agrees well with other arthropod rates, making it appropriate for dating divergences at various phylogenetic levels within the Amphipoda.