Dysbiosis Has a New Name by Steven Sandberg-Lewis, ND, DHANP and Allison Siebecker, ND, MSOM

Total Page:16

File Type:pdf, Size:1020Kb

Dysbiosis Has a New Name by Steven Sandberg-Lewis, ND, DHANP and Allison Siebecker, ND, MSOM SIBO: Dysbiosis Has A New Name by Steven Sandberg-Lewis, ND, DHANP and Allison Siebecker, ND, MSOM Many patients with bloating, to excessive numbers, IBS is likely. chances that a patient's IBS is caused by abdominal pain, constipation, or Hydrogen/methane breath testing is the SIBO: diarrhea are diagnosed with irritable most widely used diagnostic method • when a patient develops IBS following bowel syndrome and never get for this condition. Stool analysis has no a bout of acute gastroenteritis adequate responses to treatment. Others value in diagnosing SIBO. (postinfectious IBS); are given no diagnosis at all for their Symptoms of SIBO include: • when a patient reports dramatic suffering, which leads to even less transient improvement in IBS • bloating/abdominal gas chance of recovery. Our experience is symptoms after antibiotic treatment; • flatulence, belching that many of these perplexing patients • when a patient reports worsening of • abdominal pain, discomfort, or cramps have commensal microbial overgrowth. IBS symptoms from ingesting probiotic • constipation, diarrhea, or a mixture of This article details the complex issue supplements that also contain the two of small intestine bacterial overgrowth prebiotics; • heartburn (SIBO) • when a patient reports that eating • nausea SIBO is a condition in which more fiber increases constipation and • malabsorption: steatorrhea; iron, other IBS symptoms; abnormally large numbers of vitamin D, vitamin K, or B12 • when a celiac patient reports commensal bacteria (or other deficiency with or without anemia; insufficient improvement in digestive microorganisms) are present in the small and osteoporosis5 symptoms even when carefully intestine. SIBO is a common cause of • systemic symptoms: headache, following a gluten-free diet; IBS - in fact it is involved in over half fatigue, joint/muscle pain, and certain • when a patient develops constipation the cases of IBS and as high as 84% in dermatology conditions type IBS (IBS-C) after taking opiates; one study using breath testing as the Other diseases associated with • when a patient has a chronic low diagnostic marker.2 It accounts for 37% SIBO include hypothyroidism, lactose ferritin level with no other apparent of cases when endoscopic cultures of intolerance, gallstones, Crohn's disease, cause; aerobic bacteria are used for diagnosis.3 systemic sclerosis, celiac disease, • when abdominal imaging reveals a Eradication of this overgrowth leads chronic pancreatitis, diverticulitis, large gas accumulation obscuring the to a 75% reduction in IBS symptoms.4 diabetes with autonomic neuropathy, pancreas Either bacterial overgrowth or the • when small bowel follow- fibromyalgia and chronic regional pain overgrowth of methanogenic archaea through imaging reveals areas of syndrome, hepatic encephalopathy, leads to impairment of digestion "flocculation."22 non-alcoholic steatohepatitis, interstitial and absorption and produces excess cystitis, restless leg syndrome, acne quantities of hydrogen, hydrogen Mechanisms by Which Overgrowth Is rosacea, and erosive esophagitis.6~21 sulfide, or methane gas. Hydrogen and Prevented Based on clinical experience, we methane are not produced by human An important protective mechanism suspect that biliary dyskinesia and cells but are the metabolic products against SIBO is proper small intestine lymphocytic colitis may also be of fermentation of carbohydrates by motility via the migrating motor associated with SIBO. intestinal organisms. When commensals complex because stasis promotes In our practices we have found that (oral, small intestine, or large intestine bacterial growth.23 Also key in the following indicators increase the flora) multiply in the small intestine prevention are gastric, pancreatic, > TOWNSEND LETTER - FEBRUARY/MARCH 2015 BEST OF NATUROPATHIC MEDICINE 67 SIBO pneumonia 24%, and Proteus mirabilis pacemakers for the migrating motor 6.5%.36 Colonic hydrogen production complex (MMC). A key underlying > is believed to be anti-inflammatory and cause of SIBO is thought to be antineoplastic, whereas excessive small deficiency of the MMC, which moves and gall bladder secretions, since intestine hydrogen causes the symptoms debris and bacteria down into the hydrochloric acid, enzymes, and bile and signs of diarrhea-type irritable large intestine during fasting at night are bactericidal/static.24 Conditions that bowel syndrome (IBS-D).37 In addition and between meals.47 The number of disrupt the glycocalyx and microvillus to bacteria, the source of methane ICC is reduced in post-Campylobacter portions of the brush border may fuel generation in SIBO is the archaeon jejuni gastroenteritis infected rats that overgrowth. The pathophysiology Methanobrevibacter smithii. This eventually develop SIBO.48 Three involved is the loss of disaccharidases organism has been linked to obesity in months after C. jejuni gastroenteritis, in these areas and the resulting humans.36 In addition, sulfate-reducing 27% of rats had SIBO. These rats had carbohydrate malabsorption which bacteria, such as Desulfovibrio species, a lower number of ICC than controls in provides excess substrate for microbial are anaerobes that reduce sulfate to the jejunum and ileum (0.12 ICC/villus growth. The role of proper ileocecal hydrogen sulfide (H2S). In addition to was the threshold for developing SIBO). valve function in preventing cecoileal its role in SIBO, H2S is being studied as CDT toxin may destroy the interstitial reflux of colonic bacteria into the small a possible etiologic factor in ulcerative cell of Cajal by stimulating the intestine may also be important.25-26 colitis and colonic carcinogenesis.39 In production of autoantibodies against a Surprisingly, a recent study suggests normal low levels H2S has Gl protective cytoskeletal protein known as vinculin. that surgical removal of the gall bladder activity.40 The antigen-antibody complexes reduces the risk as well.27 Mucosal between antivinculin antibodies and biofilms may be preventive or may be Pathophysiology of SIBO: cytolytic distending toxin lead to a risk.28-29 Heavy drinking, as well as Autoimmunity autoimmune destruction of ICC.49'50 moderate use of alcohol, is significantly Postinfectious IBS (PI-IBS) has been associated with increased SIBO risk.30 shown to have an autoimmune etiology How SIBO Causes the Symptoms of The use of proton pump inhibitors in both murine and human studies IBS encourages overgrowth, especially of (see figure 1). Infectious gastroenteritis There are two main the hydrogen-producing type.31-32 is the most significant environmental pathophysiological issues involved risk factor for IBS.41 Organisms that in SIBO. First, bacteria can ferment Definition trigger PI-IBS include Campylobacter, carbohydrates and consume other Traditionally, >105 colony-forming Salmonella, Shigella, E. coli, viruses, nutrients ingested by the host simply by units (CFU) per m!_ of proximal jejunal and Giardia.42-45 their inappropriate location in the small aspiration has been the definition of Cytolethal distending toxin (CDT) intestine. This allows them premature SIBO in culturing studies. >103 CFU is produced by enteric pathogens that exposure to host nutrition before is now the suggested definition from cause PI-IBS. Campylobacter jejuni there is time for absorption. Bacterial more recent studies revealing that < 103 is the prototypical bacterium that fermentation produces hydrogen and/ CFU is the normal level in healthy produces CDT.46 Other bacteria that or hydrogen sulfide gas. In addition M. controls.33-34 The bacteria which are produce CDT include Haemophilus smithii produces methane.51 M. smithii most commonly overgrown are both ducreyi (chancroid), Aggregatibacter may be present in the intestinal tracts of commensal anaerobes - Bacteroides actinomycetemcomitans (periodontitis), up to 95.7% of humans.52 Microbial gas 39%, Lactobacillus 25%, Clostridium Escherichia coli (traveler's diarrhea), leads to the IBS symptoms of bloating, 20% - and commensal aerobes - Shigella dysenteriae (dysentery), pain, altered bowel movements, Streptococcus 60%, Escherichia coli Salmonella enterica (typhoid fever), eructation, and flatulence (Figure 2). 36%, Staphylococcus 13%, Klebsiella and Campylobacter upsaliensis The quantity of gas may be extensive, 11%.35 A more recent study found the (enterocolitis). causing severe bloating and distention.53 aerobes to be Escherichia coli 37%, The interstitial cells of Cajal (ICC) It is estimated that with normal levels of Enterococcus spp 32%, Klebsiella are fibroblast-like cells that act as enteric flora, the quantity of lactose in an ounce of milk fuels the production of 50 Figure 1 cc of gas. With microbial overgrowth, gas levels produced from 1 ounce of milk may approach 5000 cc.54 Excess gas can then exit the body as flatulence or eructation. A portion is also absorbed into the blood and eventually filters through the pulmonary alveolus to exit on exhalation. The intestines are sensitive to pressure, and therefore the pressure of distention can lead to abdominal pain. In addition, visceral hypersensitivity, a feature of IBS, may 68 BEST OF NATUROPATHIC MEDICINE TOWNSEND LETTER - FEBRUARY/MARCH 2015 create a lower threshold for pain/ and systemic symptoms induced by SIBO discomfort and a hyperresponsiveness these changes are listed in Figure of muscular contraction in response to 3. Key factors include bacterial the gas, leading to cramps.55'56 The gases deconjugation of bile, which induces and immediately analyzed at a lab,
Recommended publications
  • Association of Fungi and Archaea of the Gut Microbiota with Crohn's
    pathogens Article Association of Fungi and Archaea of the Gut Microbiota with Crohn’s Disease in Pediatric Patients—Pilot Study Agnieszka Krawczyk 1, Dominika Salamon 1,* , Kinga Kowalska-Duplaga 2 , Tomasz Bogiel 3,4 and Tomasz Gosiewski 1,* 1 Department of Molecular Medical Microbiology, Faculty of Medicine, Jagiellonian University Medical College, 31-121 Krakow, Poland; [email protected] 2 Department of Pediatrics, Gastroenterology and Nutrition, Faculty of Medicine, Jagiellonian University Medical College, 30-663 Krakow, Poland; [email protected] 3 Microbiology Department, Ludwik Rydygier Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Torun, 85-094 Bydgoszcz, Poland; [email protected] 4 Clinical Microbiology Laboratory, University Hospital No. 1 in Bydgoszcz, 85-094 Bydgoszcz, Poland * Correspondence: [email protected] (D.S.); [email protected] (T.G.); Tel.: +48-(12)-633-25-67 (D.S.); +48-(12)-633-25-67 (T.G.) Abstract: The composition of bacteria is often altered in Crohn’s disease (CD), but its connection to the disease is not fully understood. Gut archaea and fungi have recently been suggested to play a role as well. In our study, the presence and number of selected species of fungi and archaea in pediatric patients with CD and healthy controls were evaluated. Stool samples were collected from children with active CD (n = 54), non-active CD (n = 37) and control subjects (n = 33). The prevalence and the number of selected microorganisms were assessed by real-time PCR. The prevalence of Candida Citation: Krawczyk, A.; Salamon, D.; tropicalis was significantly increased in active CD compared to non-active CD and the control group Kowalska-Duplaga, K.; Bogiel, T.; (p = 0.011 and p = 0.036, respectively).
    [Show full text]
  • Porphyromonas Gingivalis Infection on Gut Dysbiosis and Arthritis Exacerbation in 1 Mouse Model
    Preprint: Please note that this article has not completed peer review. Effect of Porphyromonas gingivalis infection on gut dysbiosis and arthritis exacerbation in 1 mouse model CURRENT STATUS: UNDER REVISION Yuta Hamamoto Hiroshima University Kazuhisa Ouhara Hiroshima University [email protected] Author ORCiD: https://orcid.org/0000-0001-6796-884X Syuichi Munenaga HIroshima University Mikio Shoji Nagasaki University Tatsuhiko Ozawa University of Toyama Jyunzo Hisatsune National Institute of Infectious Diseases Isamu Kado Hiroshima University Mikihito Kajiya Hiroshima University Shinji Matsuda Hiroshima University Toshihisa Kawai Nova Southeastern University Noriyoshi Mizuno Hiroshima University 1 Tsuyoshi Fujita Hiroshima University Shintaro Hirata Hiroshima University Kotaro Tanimoto Hiroshima University Koji Nakayama Nagasaki University Hiroyuki Kishi University of Toyama Eiji Sugiyama Hiroshima University Hidemi Kurihara Hiroshima University DOI: 10.21203/rs.2.20521/v1 SUBJECT AREAS Rheumatology KEYWORDS Porphyromonas gingivalis, Rheumatoid Arthritis, Periodontitis, Citrullinated protein, Dysbiosis 2 Abstract Background : Porphyromonas gingivalis (Pg) infection causes periodontal disease and is one of the causative bacteria of rheumatoid arthritis (RA) exacerbation. Gut microbiota dysbiosis has shown strong associations with systemic diseases, including RA, diabetes mellitus, and inflammatory bowel disease, and inoculation of periodontopathogenic bacteria (i.e. Pg) can alter gut microbiota composition. Therefore, this study investigated dysbiosis-mediated arthritis exacerbation by Pg oral inoculation in an experimental arthritis model mouse. Methods : Pg inoculation in the oral cavity twice a week for 6 weeks was performed to induce periodontitis in SKG mice. Concomitantly, a single intraperitoneal (i.p.) injection of laminarin (LA) was administered to induce experimental arthritis (Pg-LA mouse). Citrullinated protein (CP) and IL-6 levels in periodontal, intestinal, and joint tissues, and serum were measured by ELISA.
    [Show full text]
  • The Influence of Microbiome Dysbiosis and Bacterial Biofilms On
    International Journal of Molecular Sciences Review The Influence of Microbiome Dysbiosis and Bacterial Biofilms on Epidermal Barrier Function in Atopic Dermatitis—An Update Leszek Blicharz 1,*, Lidia Rudnicka 1, Joanna Czuwara 1, Anna Wa´skiel-Burnat 1, Mohamad Goldust 2 , Małgorzata Olszewska 1 and Zbigniew Samochocki 1 1 Department of Dermatology, Medical University of Warsaw, 02-008 Warsaw, Poland; [email protected] (L.R.); [email protected] (J.C.); [email protected] (A.W.-B.); [email protected] (M.O.); [email protected] (Z.S.) 2 Department of Dermatology, University Medical Center of the Johannes Gutenberg University, 55131 Mainz, Germany; [email protected] * Correspondence: [email protected] Abstract: Atopic dermatitis (AD) is a common inflammatory dermatosis affecting up to 30% of children and 10% of adults worldwide. AD is primarily driven by an epidermal barrier defect which triggers immune dysregulation within the skin. According to recent research such phenomena are closely related to the microbial dysbiosis of the skin. There is growing evidence that cutaneous microbiota and bacterial biofilms negatively affect skin barrier function, contributing to the onset and exacerbation of AD. This review summarizes the latest data on the mechanisms leading to microbiome dysbiosis and biofilm formation in AD, and the influence of these phenomena on skin barrier function. Citation: Blicharz, L.; Rudnicka, L.; Keywords: atopic dermatitis; biofilms; microbiome; staphylococci; skin barrier Czuwara, J.; Wa´skiel-Burnat,A.; Goldust, M.; Olszewska, M.; Samochocki, Z. The Influence of Microbiome Dysbiosis and Bacterial Biofilms on Epidermal Barrier 1.
    [Show full text]
  • The Human Gut Microbiota: a Dynamic Interplay with the Host from Birth to Senescence Settled During Childhood
    Review nature publishing group The human gut microbiota: a dynamic interplay with the host from birth to senescence settled during childhood Lorenza Putignani1, Federica Del Chierico2, Andrea Petrucca2,3, Pamela Vernocchi2,4 and Bruno Dallapiccola5 The microbiota “organ” is the central bioreactor of the gastroin- producing immunological memory (2). Indeed, the intestinal testinal tract, populated by a total of 1014 bacteria and charac- epithelium at the interface between microbiota and lymphoid terized by a genomic content (microbiome), which represents tissue plays a crucial role in the mucosa immune response more than 100 times the human genome. The microbiota (2). The IS ability to coevolve with the microbiota during the plays an important role in child health by acting as a barrier perinatal life allows the host and the microbiota to coexist in a against pathogens and their invasion with a highly dynamic relationship of mutual benefit, which consists in dispensing, in modality, exerting metabolic multistep functions and stimu- a highly coordinated way, specific immune responses toward lating the development of the host immune system, through the biomass of foreign antigens, and in discriminating false well-­organized programming, which influences all of the alarms triggered by benign antigens (2). The failure to obtain growth and aging processes. The advent of “omics” technolo- or maintain this complex homeostasis has a negative impact gies (genomics, proteomics, metabolomics), characterized by on the intestinal and systemic health (2). Once the balance complex technological platforms and advanced analytical and fails, the “disturbance” causes the disease, triggering an abnor- computational procedures, has opened new avenues to the mal inflammatory response as it happens, for example, for the knowledge of the gut microbiota ecosystem, clarifying some inflammatory bowel diseases in newborns (2).
    [Show full text]
  • Alm-Dysbiosis-Preprint.Pdf
    Dysbiosis is not an answer The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Olesen, Scott W., and Eric J. Alm. “Dysbiosis Is Not an Answer.” Nature Microbiology, vol. 1, no. 12, Dec. 2016. As Published https://doi.org/10.1038/nmicrobiol.2016.228 Publisher Nature Publishing Group Version Author's final manuscript Citable link http://hdl.handle.net/1721.1/118383 Terms of Use Creative Commons Attribution-Noncommercial-Share Alike Detailed Terms http://creativecommons.org/licenses/by-nc-sa/4.0/ Dysbiosis is not an answer Scott W. Olesen and Eric J. Alm Dysbiosis, an imbalance in the microbiota, has been a major organizing concept in microbiome science and medicine. Here, we discuss how the balance concept, a holdover from prescientific thought, is irrelevant to—and may even distract from— useful research about the microbiome. Throughout most of Western medical history, it was believed that the digestion of foods produced humors: mostly invisible liquids that were transformed into the materials that make up the body. Humoral theory dictated that diseases were caused by imbalances in these humors. A doctor's role was to help the body correct this imbalance, either by altering a patient's diet—thus changing the intake of humors—or by expelling excess humors, for example, by bloodletting1. Now, with modern DNA sequencing technology, we know our digestive systems are actually filled with mostly invisible microorganisms that respond to our diet. We have found that altering diet, ingesting probiotics, and wholesale replacement of the microbial community can improve our health.
    [Show full text]
  • Gut Dysbiosis, Inflammation and Type 2 Diabetes in Mice Using
    ISSN 1519-6984 (Print) ISSN 1678-4375 (Online) THE INTERNATIONAL JOURNAL ON NEOTROPICAL BIOLOGY THE INTERNATIONAL JOURNAL ON GLOBAL BIODIVERSITY AND ENVIRONMENT Original Article Gut dysbiosis, inflammation and type 2 diabetes in mice using synthetic gut microbiota from diabetic humans Disbiose intestinal, inflamação e diabetes tipo 2 em camundongos usando microbiota intestinal sintética de humanos diabéticos I. Liaqata* , N. M. Alia , N. Arshadb , S. Sajjadc , F. Rashidc , U. Hanifd , C. Arae , M. Ulfatf , S. Andleebg , U. F. Awand , A. Bibih , M. Mubini , S. Alia , H. M. Tahira and I. ul-Haqj aGC University Lahore, Department of Zoology, Microbiology Laboratory, Lahore, Pakistan bThe University of Lahore, Department of Zoology, Lahore, Pakistan cLahore College for Women University, Department of Zoology, Lahore, Pakistan dGC University, Department of Botany, Lahore, Pakistan eUniversity of the Punjab, Department of Zoology, Lahore, Pakistan fLahore College for Women University, Department of Botany, Lahore, Pakistan gUniversity of Azad Jammu and Kashmir, Department of Zoology, Muzaffarabad, Pakistan hThe Women University, Department of Zoology, Multan, Pakistan iUniversity of Agriculture, Centre of Agricultural Biochemistry and Biotechnology, Faisalabad, Pakistan jGC University, Institute of Industrial Biotechnology, Lahore, Pakistan Abstract The study was aimed to assess impact of high fat diet (HFD) and synthetic human gut microbiota (GM) combined with HFD and chow diet (CD) in inducing type-2 diabetes (T2D) using mice model. To our knowledge, this is the first study using selected human GM transplantation via culture based method coupled dietary modulation in mice for in vivo establishment of inflammation leading to T2D and gut dysbiosis. Twenty bacteria (T2D1-T2D20) from stool samples of confirmed T2D subjects were found to be morphologically different and subjected to purification on different media both aerobically and anerobically, which revealed seven bacteria more common among 20 isolates on the basis of biochemical characterization.
    [Show full text]
  • Is Gut Microbiota Dysbiosis a Predictor of Increased Susceptibility to Poor Outcome of COVID-19 Patients? an Update
    microorganisms Review Is Gut Microbiota Dysbiosis a Predictor of Increased Susceptibility to Poor Outcome of COVID-19 Patients? An Update Carolina Ferreira 1,2,3 , Sofia D. Viana 1,2,3,4 and Flávio Reis 1,2,3,* 1 Institute of Pharmacology & Experimental Therapeutics, & Coimbra Institute for Clinical and Biomedical Research (iCBR), Faculty of Medicine, University of Coimbra, 3000-548 Coimbra, Portugal; [email protected] (C.F.); sofi[email protected] (S.D.V.) 2 Center for Innovative Biomedicine and Biotechnology (CIBB), University of Coimbra, 3004-504 Coimbra, Portugal 3 Clinical Academic Center of Coimbra (CACC), 3000-075 Coimbra, Portugal 4 Polytechnic Institute of Coimbra, ESTESC-Coimbra Health School, Pharmacy, 3046-854 Coimbra, Portugal * Correspondence: [email protected]; Tel.: +351-239-480-053 Abstract: The scientific knowledge already attained regarding the way severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infects human cells and the clinical manifestations and conse- quences for Coronavirus Disease 2019 (COVID-19) patients, especially the most severe cases, brought gut microbiota into the discussion. It has been suggested that intestinal microflora composition plays a role in this disease because of the following: (i) its relevance to an efficient immune system response; (ii) the fact that 5–10% of the patients present gastrointestinal symptoms; and (iii) because it is modulated by intestinal angiotensin-converting enzyme 2 (ACE2) (which is the virus receptor). In addition, it is known that the most severely affected patients (those who stay longer in hospital, who require intensive care, and who eventually die) are older people with pre-existing cardiovascular, metabolic, renal, and pulmonary diseases, the same people in which the prevalence of gut microflora dysbiosis is higher.
    [Show full text]
  • “Live Gut Bacteria” in Blood of Japanese Patients with Type 2
    Diabetes Care Volume 37, August 2014 2343 Gut Dysbiosis and Detection of Junko Sato,1 Akio Kanazawa,1,2 Fuki Ikeda,1 Tomoaki Yoshihara,1 “Live Gut Bacteria” in Blood of Hiromasa Goto,1 Hiroko Abe,1 Koji Komiya,1 Minako Kawaguchi,1 Japanese Patients With Type 2 Tomoaki Shimizu,1 Takeshi Ogihara,1 Yoshifumi Tamura,1,3 Yuko Sakurai,1 Diabetes Risako Yamamoto,1 Tomoya Mita,1 Yoshio Fujitani,1,4 Hiroshi Fukuda,5 6 6 Diabetes Care 2014;37:2343–2350 | DOI: 10.2337/dc13-2817 Koji Nomoto, Takuya Takahashi, Takashi Asahara,6 Takahisa Hirose,7 Satoru Nagata,8,9 Yuichiro Yamashiro,8 and Hirotaka Watada1–4,10 OBJECTIVE Mounting evidence indicates that the gut microbiota are an important modifier of obesity and diabetes. However, so far there is no information on gut microbiota and “live gut bacteria” in the systemic circulation of Japanese patients with type 2 diabetes. RESEARCH DESIGN AND METHODS 1Department of Metabolism & Endocrinology, Using a sensitive reverse transcription–quantitative PCR (RT-qPCR) method, we Juntendo University Graduate School of Medi- cine, Tokyo, Japan determined the composition of fecal gut microbiota in 50 Japanese patients with 2Center for Therapeutic Innovations in Diabetes, type 2 diabetes and 50 control subjects, and its association with various clinical Juntendo University Graduate School of Medi- parameters, including inflammatory markers. We also analyzed the presence of cine, Tokyo, Japan PATHOPHYSIOLOGY/COMPLICATIONS 3 gut bacteria in blood samples. Sportology Center, Juntendo University Gradu- ate School of Medicine,
    [Show full text]
  • Enteric Fungal Microbiota Dysbiosis and Ecological Alterations In
    Gut microbiota ORIGINAL ARTICLE Gut: first published as 10.1136/gutjnl-2018-317178 on 24 November 2018. Downloaded from Enteric fungal microbiota dysbiosis and ecological alterations in colorectal cancer Olabisi Oluwabukola Coker,1 Geicho Nakatsu,1 Rudin Zhenwei Dai,1 William Ka Kei Wu,1,2 Sunny Hei Wong,1 Siew Chien Ng,1 Francis Ka Leung Chan,1 Joseph Jao Yiu Sung,1 Jun Yu1 ► Additional material is ABSTRact published online only. To view Objectives Bacteriome and virome alterations are Significance of this study please visit the journal online associated with colorectal cancer (CRC). Nevertheless, (http:// dx. doi. org/ 10. 1136/ What is already known on this subject? gutjnl- 2018- 317178). the gut fungal microbiota in CRC remains largely unexplored. We aimed to characterise enteric mycobiome ► Donor gut microbiota from patients with 1State Key Laboratory of in CRC. colorectal cancer (CRC) has been shown to Digestive Disease, Department induce tumourigenesis in germ-deficient mice of Medicine and Therapeutics, Design Faecal shotgun metagenomic sequences of Li Ka Shing Institute of Health 184 patients with CRC, 197 patients with adenoma and models. Sciences, CUHK Shenzhen 204 control subjects from Hong Kong were analysed ► Bacteriome and virome alterations are Research Institute, The Chinese (discovery cohort: 73 patients with CRC and 92 control associated with CRC. University of Hong Kong, Hong ► The involvement of gut fungal microbiota in Kong subjects; validation cohort: 111 patients with CRC, 197 2Department of Anaesthesia patients
    [Show full text]
  • Dysbiosis in Pediatrics Is Associated with Respiratory Infections: Is There a Place for Bacterial-Derived Products?
    microorganisms Review Dysbiosis in Pediatrics Is Associated with Respiratory Infections: Is There a Place for Bacterial-Derived Products? Stefania Ballarini 1,*, Giovanni A. Rossi 2, Nicola Principi 3 and Susanna Esposito 4 1 Department of Experimental Medicine, University of Perugia, Didactic Pole “Sant’Andrea delle Fratte”, 06132 Perugia, Italy 2 Unit of Pediatric Pulmonary, G. Gaslini University Hospital, 16147 Genoa, Italy; [email protected] 3 Università degli Studi di Milano, 20122 Milan, Italy; [email protected] 4 Department of Medicine and Surgery, Pediatric Clinic, University of Parma, 43126 Parma, Italy; [email protected] * Correspondence: [email protected] Abstract: Respiratory tract infections (RTIs) are common in childhood because of the physiologic immaturity of the immune system, a microbial community under development in addition to other genetic, physiological, environmental and social factors. RTIs tend to recur and severe lower viral RTIs in early childhood are not uncommon and are associated with increased risk of respiratory disorders later in life, including recurrent wheezing and asthma. Therefore, a better understanding of the main players and mechanisms involved in respiratory morbidity is necessary for a prompt and improved care as well as for primary prevention. The inter-talks between human immune components and microbiota as well as their main functions have been recently unraveled; nevertheless, more is still to be discovered or understood in the above medical conditions. The aim of this review paper is to provide the most up-to-date overview on dysbiosis in pre-school children and its association with Citation: Ballarini, S.; Rossi, G.A.; RTIs and their complications.
    [Show full text]
  • Methods in Microbiome Research Namrata Iyer
    TECHNOLOGY FEATURE Methods in microbiome research Namrata Iyer From the freezing lakes of Antarctica to satisfied most of these requirements. The metametabolomics are more technically the thermal vents deep within the oceans, most widely used method in microbiome challenging, given the sheer diversity of microbes have managed to survive and analysis is 16s rRNA sequencing2. The proteins and metabolites that each microbe thrive in the most inhospitable of con- 16s rRNA gene is highly conserved in all can produce. While these techniques are ditions. Unsurprisingly, the relatively bacteria and sequencing of its regions of still in their infancy, they promise to reveal luxurious abode of the human body is hyper- variability allows the identification unique insights into the communication chockablock with microbial life. We have of different bacterial species. But this tech- and cooperation between the different coevolved over centuries with these micro- nique suffers from inaccuracies at species members of the microbiota, and also host- organisms, collectively referred to as our level classification2. Furthermore, it limits microbiota interactions. microbiota, resulting in a relationship the analysis to only bacterial species while that is mutually beneficial. However, it has ignoring other members in the community. Microbiota structure only been in the past few decades that the Platforms are now being developed that can Community structure is a function of who importance of the microbiota to human couple this technique with other genetic is present in the microbiota community health has been uncovered. It is now well- markers, allowing detection of eukaryotic and how these members interact with each known that imbalance in the microbiota— members of the microbiota as well3.
    [Show full text]
  • FECAL MICROBIOTA TRANSPLANTATION: from Theory to Practice
    FECAL MICROBIOTA TRANSPLANTATION: From Theory to Practice Craig B. Webb, PhD, DVM, DACVIM Colorado State University Fort Collins, CO, USA INTRODUCTION If our patients were cows instead of cats and dogs the use of Fecal Transplantation would be a no- brainer. Known as Rumen Transfaunation in bovine, the cud from a healthy donor cow is used to treat a sick cow, based on the assumption that changes in the intestinal microbial population could be associated with GI disease (indigestion), abnormal rumen function post-surgery (left-displaced abomasum), and manifestations of toxin exposure. Rumen Transfaunation is considered an effective, practical, and easy method to treat simple indigestion of ruminants. In humans Fecal Microbiota Transplantation (FMT) is the transfer of stool from a healthy donor into the colon of a patient whose disease is, again, presumed to either cause or result as the consequence of an altered microbiome. FMT is best studied and most frequently and effectively used for humans with recurrent Clostricium difficile (CDI) infection. The potential therapeutic benefit of FMT may extend beyond CDI in people, particularly in conditions of GI dysbiosis and immune dysfunction. As of Feb, 2018, searching PubMed for “fecal microbiota transplantation” AND “cat”, “feline”, “dog”, or “canine” produced ONE publication on the Role of the GI Microbiota in Small Animal Health and Disease (Redfern et al. Vet Rec 2017). The Importance of an Altered Microbiota: Dysbiosis The fecal Microbiota (actual organisms) and Microbiome (genetic material) are essential to the normal development and function of most every system in the body, although most often highlighted with regards to the gastrointestinal tract [these terms are often used interchangeably].
    [Show full text]