The Realized Benefits from Bioprospecting in the Wake of the Convention on Biological Diversity
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Developing Bioprospecting Strategies for Bioplastics Through the Large-Scale Mining of Microbial Genomes
fmicb-12-697309 July 6, 2021 Time: 18:39 # 1 ORIGINAL RESEARCH published: 12 July 2021 doi: 10.3389/fmicb.2021.697309 Developing Bioprospecting Strategies for Bioplastics Through the Large-Scale Mining of Microbial Genomes Paton Vuong1, Daniel J. Lim2, Daniel V. Murphy1, Michael J. Wise3,4, Andrew S. Whiteley5 and Parwinder Kaur1* 1 UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia, 2 Department of Physics and Astronomy, Curtin University, Perth, WA, Australia, 3 School of Physics, Mathematics and Computing, The University of Western Australia, Perth, WA, Australia, 4 Marshall Centre for Infectious Disease Research and Training, University of Western Australia, Perth, WA, Australia, 5 Centre for Environment and Life Sciences, CSIRO, Floreat, WA, Australia The accumulation of petroleum-based plastic waste has become a major issue for the environment. A sustainable and biodegradable solution can be found in Polyhydroxyalkanoates (PHAs), a microbially produced biopolymer. An analysis of the global phylogenetic and ecological distribution of potential PHA producing bacteria and Edited by: archaea was carried out by mining a global genome repository for PHA synthase (PhaC), Obulisamy Parthiba Karthikeyan, University of Houston, United States a key enzyme involved in PHA biosynthesis. Bacteria from the phylum Actinobacteria Reviewed by: were found to contain the PhaC Class II genotype which produces medium-chain Rajesh K. Sani, length PHAs, a physiology until now only found within a few Pseudomonas species. South Dakota School of Mines Further, several PhaC genotypes were discovered within Thaumarchaeota, an archaeal and Technology, United States Vijay Kumar, phylum with poly-extremophiles and the ability to efficiently use CO2 as a carbon Institute of Himalayan Bioresource source, a significant ecological group which have thus far been little studied for PHA Technology (CSIR), India production. -
When Is Open Access Not Open Access?
Editorial When Is Open Access Not Open Access? Catriona J. MacCallum ince 2003, when PLoS Biology Box 1. The Bethesda Statement on Open-Access Publishing was launched, there has been This is taken from http:⁄⁄www.earlham.edu/~peters/fos/bethesda.htm. a spectacular growth in “open- S 1 access” journals. The Directory of An Open Access Publication is one that meets the following two conditions: Open Access Journals (http:⁄⁄www. 1. The author(s) and copyright holder(s) grant(s) to all users a free, irrevocable, doaj.org/), hosted by Lund University worldwide, perpetual right of access to, and a license to copy, use, distribute, transmit Libraries, lists 2,816 open-access and display the work publicly and to make and distribute derivative works, in any digital journals as this article goes to press medium for any responsible purpose, subject to proper attribution of authorship2, as (and probably more by the time you well as the right to make small numbers of printed copies for their personal use. read this). Authors also have various 2. A complete version of the work and all supplemental materials, including a copy of “open-access” options within existing the permission as stated above, in a suitable standard electronic format is deposited subscription journals offered by immediately upon initial publication in at least one online repository that is supported traditional publishers (e.g., Blackwell, by an academic institution, scholarly society, government agency, or other well- Springer, Oxford University Press, and established organization that seeks to enable open access, unrestricted distribution, many others). In return for a fee to interoperability, and long-term archiving (for the biomedical sciences, PubMed Central the publisher, an author’s individual is such a repository). -
Understanding Bioprospecting: Can Indigenous Populations Benefit from the Search for Pharmaceuticals in Areas of High Biodiversity
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Environmental Studies Undergraduate Student Theses Environmental Studies Program Spring 5-2011 Understanding Bioprospecting: Can Indigenous Populations Benefit from the Search for Pharmaceuticals in Areas of High Biodiversity Emily Schwindt University of Nebraska-Lincoln Follow this and additional works at: https://digitalcommons.unl.edu/envstudtheses Part of the Agricultural and Resource Economics Commons, Biological and Physical Anthropology Commons, Environmental Health and Protection Commons, Ethnic Studies Commons, Natural Resource Economics Commons, Natural Resources and Conservation Commons, Natural Resources Management and Policy Commons, Other Environmental Sciences Commons, Place and Environment Commons, and the Sustainability Commons Disclaimer: The following thesis was produced in the Environmental Studies Program as a student senior capstone project. Schwindt, Emily, "Understanding Bioprospecting: Can Indigenous Populations Benefit from the Search for Pharmaceuticals in Areas of High Biodiversity" (2011). Environmental Studies Undergraduate Student Theses. 46. https://digitalcommons.unl.edu/envstudtheses/46 This Article is brought to you for free and open access by the Environmental Studies Program at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Environmental Studies Undergraduate Student Theses by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. UNDERSTANDING BIOPROSPECTING: -
From Coalition to Commons: Plan S and the Future of Scholarly Communication
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Copyright, Fair Use, Scholarly Communication, etc. Libraries at University of Nebraska-Lincoln 2019 From Coalition to Commons: Plan S and the Future of Scholarly Communication Rob Johnson Research Consulting Follow this and additional works at: https://digitalcommons.unl.edu/scholcom Part of the Intellectual Property Law Commons, Scholarly Communication Commons, and the Scholarly Publishing Commons Johnson, Rob, "From Coalition to Commons: Plan S and the Future of Scholarly Communication" (2019). Copyright, Fair Use, Scholarly Communication, etc.. 157. https://digitalcommons.unl.edu/scholcom/157 This Article is brought to you for free and open access by the Libraries at University of Nebraska-Lincoln at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Copyright, Fair Use, Scholarly Communication, etc. by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Insights – 32, 2019 Plan S and the future of scholarly communication | Rob Johnson From coalition to commons: Plan S and the future of scholarly communication The announcement of Plan S in September 2018 triggered a wide-ranging debate over how best to accelerate the shift to open access. The Plan’s ten principles represent a call for the creation of an intellectual commons, to be brought into being through collective action by funders and managed through regulated market mechanisms. As it gathers both momentum and critics, the coalition must grapple with questions of equity, efficiency and sustainability. The work of Elinor Ostrom has shown that successful management of the commons frequently relies on polycentricity and adaptive governance. The Plan S principles must therefore function as an overarching framework within which local actors retain some autonomy, and should remain open to amendment as the scholarly communication landscape evolves. -
Relationships Among Biodiversity Dimensions of Birds in Nebraska Nadejda Mirochnitchenko University of Nebraska - Lincoln, [email protected]
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Dissertations & Theses in Natural Resources Natural Resources, School of Fall 12-2018 Relationships Among Biodiversity Dimensions of Birds in Nebraska Nadejda Mirochnitchenko University of Nebraska - Lincoln, [email protected] Follow this and additional works at: http://digitalcommons.unl.edu/natresdiss Part of the Biodiversity Commons, Ecology and Evolutionary Biology Commons, Natural Resources and Conservation Commons, Natural Resources Management and Policy Commons, Ornithology Commons, and the Poultry or Avian Science Commons Mirochnitchenko, Nadejda, "Relationships Among Biodiversity Dimensions of Birds in Nebraska" (2018). Dissertations & Theses in Natural Resources. 275. http://digitalcommons.unl.edu/natresdiss/275 This Article is brought to you for free and open access by the Natural Resources, School of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Dissertations & Theses in Natural Resources by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. RELATIONSHIPS AMONG BIODIVERSITY DIMENSIONS OF BIRDS IN NEBRASKA by Nadejda Anatolievna Mirochnitchenko A THESIS Presented to the Faculty of The Graduate College at the University of Nebraska In Partial Fulfillment of Requirements For the Degree of Master of Science Major: Natural Resource Sciences Under the Supervision of Professors Erica F. Stuber and Joseph J. Fontaine Lincoln, Nebraska December 2018 RELATIONSHIPS AMONG BIODIVERSITY -
A Critique of John Stuart Mill Chris Daly
Southern Illinois University Carbondale OpenSIUC Honors Theses University Honors Program 5-2002 The Boundaries of Liberalism in a Global Era: A Critique of John Stuart Mill Chris Daly Follow this and additional works at: http://opensiuc.lib.siu.edu/uhp_theses Recommended Citation Daly, Chris, "The Boundaries of Liberalism in a Global Era: A Critique of John Stuart Mill" (2002). Honors Theses. Paper 131. This Dissertation/Thesis is brought to you for free and open access by the University Honors Program at OpenSIUC. It has been accepted for inclusion in Honors Theses by an authorized administrator of OpenSIUC. For more information, please contact [email protected]. r The Boundaries of Liberalism in a Global Era: A Critique of John Stuart Mill Chris Daly May 8, 2002 r ABSTRACT The following study exanunes three works of John Stuart Mill, On Liberty, Utilitarianism, and Three Essays on Religion, and their subsequent effects on liberalism. Comparing the notion on individual freedom espoused in On Liberty to the notion of the social welfare in Utilitarianism, this analysis posits that it is impossible for a political philosophy to have two ultimate ends. Thus, Mill's liberalism is inherently flawed. As this philosophy was the foundation of Mill's progressive vision for humanity that he discusses in his Three Essays on Religion, this vision becomes paradoxical as well. Contending that the neo-liberalist global economic order is the contemporary parallel for Mill's religion of humanity, this work further demonstrates how these philosophical flaws have spread to infect the core of globalization in the 21 st century as well as their implications for future international relations. -
Open Access Publishing
Open Access The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Suber, Peter. 2012. Open access. Cambridge, Mass: MIT Press. [Updates and Supplements: http://cyber.law.harvard.edu/hoap/ Open_Access_(the_book)] Published Version http://mitpress.mit.edu/books/open-access Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:10752204 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA OPEN ACCESS The MIT Press Essential Knowledge Series Information and the Modern Corporation, James Cortada Intellectual Property Strategy, John Palfrey Open Access, Peter Suber OPEN ACCESS PETER SUBER TheMIT Press | Cambridge, Massachusetts | London, England © 2012 Massachusetts Institute of Technology This work is licensed under the Creative Commons licenses noted below. To view a copy of these licenses, visit creativecommons.org. Other than as provided by these licenses, no part of this book may be reproduced, transmitted, or displayed by any electronic or mechanical means without permission from the publisher or as permitted by law. This book incorporates certain materials previously published under a CC-BY license and copyright in those underlying materials is owned by SPARC. Those materials remain under the CC-BY license. Effective June 15, 2013, this book will be subject to a CC-BY-NC license. MIT Press books may be purchased at special quantity discounts for business or sales promotional use. -
Crop Genetic Resources Bulletin Number 2 an Economic Appraisal May 2005 Kelly Day Rubenstein, Paul Heisey, Robbin Shoemaker, John Sullivan, and George Frisvold
A Report from the Economic Research Service United States Department www.ers.usda.gov of Agriculture Economic Information Crop Genetic Resources Bulletin Number 2 An Economic Appraisal May 2005 Kelly Day Rubenstein, Paul Heisey, Robbin Shoemaker, John Sullivan, and George Frisvold Abstract: Crop genetic resources are the basis of agricultural production, and significant economic benefits have resulted from their conservation and use. However, crop genetic resources are largely public goods, so private incentives for genetic resource conservation may fall short of achieving public objectives. Within the U.S. germplasm system, certain crop collec- tions lack sufficient diversity to reduce vulnerability to pests and diseases. Many such genetic resources lie outside the United States. This report examines the role of genetic resources, genetic diversity, and efforts to value genetic resources. The report also evaluates economic and institutional fac- tors influencing the flow of genetic resources, including international agree- ments, and their significance for agricultural research and development in the United States. Keywords: Genetic resources, genetic diversity, germplasm, R&D, interna- tional transfer of genetic resources, in situ conservation, ex situ conserva- tion, gene banks, intellectual property. Acknowledgments: The authors wish to thank Allan Stoner, Henry Shands, and Peter Bretting for their thoughtful reviews and their valuable comments. Thanks for reviews above and beyond the call of duty belong to June Blalock, whose patience and insight were critical to the production of this report. We also thank Joe Cooper who reviewed portions of the manuscripts. Keith Wiebe provided helpful guidance in the development of the final draft. We thank Dale Simms for his excellent editorial work and Susan DeGeorge for her help with graphics and layout. -
Will Sci-Hub Kill the Open Access Citation Advantage and (At Least for Now) Save Toll Access Journals?
Will Sci-Hub Kill the Open Access Citation Advantage and (at least for now) Save Toll Access Journals? David W. Lewis October 2016 © 2016 David W. Lewis. This work is licensed under a Creative Commons Attribution 4.0 International license. Introduction It is a generally accepted fact that open access journal articles enjoy a citation advantage.1 This citation advantage results from the fact that open access journal articles are available to everyone in the word with an Internet collection. Thus, anyone with an interest in the work can find it and use it easily with no out-of-pocket cost. This use leads to citations. Articles in toll access journals on the other hand, are locked behind paywalls and are only available to those associated with institutions who can afford the subscription costs, or who are willing and able to purchase individual articles for $30 or more. There has always been some slippage in the toll access journal system because of informal sharing of articles. Authors will usually send copies of their work to those who ask and sometime post them on their websites even when this is not allowable under publisher’s agreements. Stevan Harnad and his colleagues proposed making this type of author sharing a standard semi-automated feature for closed articles in institutional repositories.2 The hashtag #ICanHazPDF can be used to broadcast a request for an article that an individual does not have access to.3 Increasingly, toll access articles are required by funder mandates to be made publically available, though usually after an embargo period. -
Plant Genetic Resources As Commons: the Model of Fao’S International Treaty
PLANT GENETIC RESOURCES AS COMMONS: THE MODEL OF FAO’S INTERNATIONAL TREATY Dr. María Iglesias Introduction After almost 7 years of negotiations, the International Treaty on Plant Genetic Resources for Food and Agriculture (hereinafter ITPGRFA) was adopted in November 20011. The Treaty already recognises in its Preamble that plant genetic resources for food and agriculture are a common concern of all countries, in that all countries depend very largely on plant genetic resources for food and agriculture that originated elsewhere. Thus, the main objectives of the ITPGRFA are the conservation and sustainable use of plant genetic resources for food and agriculture (hereinafter PGRFAs) and the fair and equitable sharing of the benefits arising out of their use, in harmony with the Convention on Biological Diversity, for sustainable agriculture and food security2. Although the Treaty covers all PGRs3, it establishes an international commons pool, the so called multilateral system, only for certain kinds of resources that will guarantee the access to these resources and the sharing of benefits 1 The ITPGRFA entered in to force in June 2004. In December 2008, 119 states had ratified it. 2 Art. 1. The ITPGRFA may be considered in fact as a special application of art. 15 (Access to Genetic Resources) of the Convention on Biological Diversity: “1. Recognizing the sovereign rights of States over their natural resources, the authority to determine access to genetic resources rests with the national governments and is subject to national legislation. 2. Each Contracting Party shall endeavour to create conditions to facilitate access to genetic resources for environmentally sound uses by other Contracting Parties and not to impose restrictions that run counter to the objectives of this Convention. -
Global Commons: Between Cooperation and Competition by Gerald Stang
17 2013 Photo by NASA / Rex Features (1568628a) Features / Rex NASA by Photo Global commons: Between cooperation and competition by Gerald Stang Rapid economic development and increasing inter- What exactly are the global commons? national trade are leading to a more crowded interna- tional stage and raising new challenges in the ‘global Security analysts generally identify four domains as commons’ – those domains that are not under the global commons: high seas, airspace, outer space control or jurisdiction of any state but are open for use and, now, cyberspace. From a security perspective, by countries, companies and individuals from around the primary concern is safeguarding ‘access’ to these the world. Their management involves increasingly domains for commercial and military reasons. complex processes to accommodate and integrate the interests and responsibilities of states, international It is important to highlight that this language differs organisations and a host of non-state actors. from the discourse on commons developed by envi- ronmental analysts: their arguments focus on dam- Shared rules regarding the usage of - and access to age to the ‘condition’ of the commons from overuse - the global commons encourage their peaceful and by actors who do not have to pay direct costs. They cooperative use. Over the last seven decades, the US worry about the depletion of shared resources such as has led in the creation of a liberal international order ocean fish stocks, or the damage to shared domains which has attempted to define these rules in such a such as Antarctica or the atmosphere. way as to make it easier and more beneficial to join the order and follow the rules than it does to operate A third strand of analysis looks not at the need for outside of (or undermine) it. -
The "Tragedy of the Commons" in Plant Genetic Resources: the Need for a New International Regime Centered Around an International Biotechnology Patent Office
Gulati: The "Tragedy of the Commons" in Plant Genetic Resources: The Need for a New International Regime Centered Around an International Biotechnology Patent Office Note The "Tragedy of the Commons" in Plant Genetic Resources: The Need for a New International Regime Centered Around an International Biotechnology Patent Office Chetan Gulati- The last several centuries have seen a transformation in the ways in which wealth is generated. As society has transformed itself in the post- industrial era, "knowledge" and "information," as opposed to land and physical property, have increasingly become the primary sources of wealth generation.1 For example, historically, it was ownership of the forest that was the principal channel for the derivation of riches. Today it is the possession of the patent in the pharmaceutical product derived from the leaves of the trees of the very same forest that is the fountain from which the greatest wealth springs. It is not surprising, therefore, that the strategy of wealth maximization has shifted from the desire to accumulate physical property to one in which the domination2 of intellectual property rights ("IPRs") has become preeminent. As already alluded to, the products derived from plant genetic resources ("PGRs")3 are major sources of wealth generation for developed t J.D., Yale Law School, expected 2002. I am grateful to Professor Gideon Parchomovsky for his guidance and valuable commentary. I should also thank my colleagues at the Yale Law School, especially Saema Somalya, Jean Tom and the other editors of the Yale Human Rights and Development Law Journal, without whose constant challenge to my ideas, this project would never have come to fruition.