A Review Article on the Chemical Origin of Life
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Modelling Panspermia in the TRAPPIST-1 System
October 13, 2017 Modelling panspermia in the TRAPPIST-1 system James A. Blake1,2*, David J. Armstrong1,2, Dimitri Veras1,2 Abstract The recent ground-breaking discovery of seven temperate planets within the TRAPPIST-1 system has been hailed as a milestone in the development of exoplanetary science. Centred on an ultra-cool dwarf star, the planets all orbit within a sixth of the distance from Mercury to the Sun. This remarkably compact nature makes the system an ideal testbed for the modelling of rapid lithopanspermia, the idea that micro-organisms can be distributed throughout the Universe via fragments of rock ejected during a meteoric impact event. We perform N-body simulations to investigate the timescale and success-rate of lithopanspermia within TRAPPIST-1. In each simulation, test particles are ejected from one of the three planets thought to lie within the so-called ‘habitable zone’ of the star into a range of allowed orbits, constrained by the ejection velocity and coplanarity of the case in question. The irradiance received by the test particles is tracked throughout the simulation, allowing the overall radiant exposure to be calculated for each one at the close of its journey. A simultaneous in-depth review of space microbiological literature has enabled inferences to be made regarding the potential survivability of lithopanspermia in compact exoplanetary systems. 1Department of Physics, University of Warwick, Coventry, CV4 7AL 2Centre for Exoplanets and Habitability, University of Warwick, Coventry, CV4 7AL *Corresponding author: [email protected] Contents Universe, and can propagate from one location to another. This interpretation owes itself predominantly to the works of William 1 Introduction1 Thompson (Lord Kelvin) and Hermann von Helmholtz in the 1.1 Mechanisms for panspermia...............2 latter half of the 19th Century. -
Oligomeric A2 + B3 Approach to Branched Poly(Arylene Ether Sulfone)
“One-Pot” Oligomeric A 2 + B 3 Approach to Branched Poly(arylene ether sulfone)s: Reactivity Ratio Controlled Polycondensation A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science By ANDREA M. ELSEN B.S., Wright State University, 2007 2009 Wright State University WRIGHT STATE UNIVERSITY SCHOOL OF GRADUATE STUDIES June 19, 200 9 I HEREBY RECOMMEND THAT THE THESIS PREPARED UNDER MY SUPERVISION BY Andrea M. Elsen ENTITLED “One-Pot” Oligomeric A2 + B3 Approach to Branched Poly(arylene ether sulfone)s: Reactivity Ratio Controlled Polycondenstation BE ACCEPTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF Master of Science . _________________________ Eric Fossum, Ph.D. Thesis Director _________________________ Kenneth Turnbull, Ph.D. Department Chair Committee on Final Examination ____________________________ Eric Fossum, Ph.D. ____________________________ Kenneth Turnbull, Ph.D. ____________________________ William A. Feld, Ph.D. ____________________________ Joseph F. Thomas, Jr., Ph.D. Dean, School of Graduate Studies Abstract Elsen, Andrea M. M.S., Department of Chemistry, Wright State University, 2009. “One-Pot” Oligomeric A 2 + B 3 Approach to Branched Poly(arylene ether sulfone)s: Reactivity Ratio Controlled Polycondensation The synthesis of fully soluble branched poly(arylene ether)s via an oligomeric A 2 + B 3 system, in which the A 2 oligomers are generated in situ, is presented. This approach takes advantage of the significantly higher reactivity toward nucleophilic aromatic substitution reactions, NAS, of B 2, 4-Fluorophenyl sulfone, relative to B 3, tris (4-Fluorophenyl) phosphine oxide. The A 2 oligomers were synthesized by reaction of Bisphenol-A and B 2, in the presence of the B 3 unit, at temperatures between 100 and 160 °C, followed by an increase in the reaction temperature to 180 °C at which point the branching unit was incorporated. -
Prebiological Evolution and the Metabolic Origins of Life
Prebiological Evolution and the Andrew J. Pratt* Metabolic Origins of Life University of Canterbury Keywords Abiogenesis, origin of life, metabolism, hydrothermal, iron Abstract The chemoton model of cells posits three subsystems: metabolism, compartmentalization, and information. A specific model for the prebiological evolution of a reproducing system with rudimentary versions of these three interdependent subsystems is presented. This is based on the initial emergence and reproduction of autocatalytic networks in hydrothermal microcompartments containing iron sulfide. The driving force for life was catalysis of the dissipation of the intrinsic redox gradient of the planet. The codependence of life on iron and phosphate provides chemical constraints on the ordering of prebiological evolution. The initial protometabolism was based on positive feedback loops associated with in situ carbon fixation in which the initial protometabolites modified the catalytic capacity and mobility of metal-based catalysts, especially iron-sulfur centers. A number of selection mechanisms, including catalytic efficiency and specificity, hydrolytic stability, and selective solubilization, are proposed as key determinants for autocatalytic reproduction exploited in protometabolic evolution. This evolutionary process led from autocatalytic networks within preexisting compartments to discrete, reproducing, mobile vesicular protocells with the capacity to use soluble sugar phosphates and hence the opportunity to develop nucleic acids. Fidelity of information transfer in the reproduction of these increasingly complex autocatalytic networks is a key selection pressure in prebiological evolution that eventually leads to the selection of nucleic acids as a digital information subsystem and hence the emergence of fully functional chemotons capable of Darwinian evolution. 1 Introduction: Chemoton Subsystems and Evolutionary Pathways Living cells are autocatalytic entities that harness redox energy via the selective catalysis of biochemical transformations. -
Regarding Belief in Primordial Soup to Explain the Origin of Life
Regarding Belief in Primordial Soup to explain the Origin of Life Belief in a primordial soup where life might spontaneously evolve is as wrong as believing the earth is flat, or, as Hoyle and Wickramasinghe (1981) suggest, as wrong as believing that the pre-Copernican idea that the earth is the center of the universe. They state, “It will be no bad thing to abandon this position” (p. 138). The belief in primordial soup goes something like this: “Somehow a brew of appropriate chemicals managed to get together, the organic soup, and somehow the chemicals managed to shuffle themselves into an early primitive life-form. From then on, all appeared to be plain-sailing, natural selection operating on randomly generated mutations would do the rest” (p. 131). Today we know that life does not arise spontaneously. In the 1860s, Louis Pasteur demonstrated that “the concept of spontaneous generation” was incorrect using “carefully designed experiments” (p. 36). Yet many biologists still “believe that life started on Earth through spontaneous processes” (p. 37). “The recourse to an organic soup to cross this biggest hurdle is evidently a blatant recourse to the spontaneous generation theory which Pasteur claimed to have destroyed. Nevertheless, most scientists, even to this day, have been satisfied to accept it” (p. 37). What scientific tests did Louis Pasteur conduct about spontaneous generation of life? How did he set up his experiment? What were his steps? What was his result? _________________________________________________________________ _________________________________________________________________ -
Foundations of Complex Life: Evolution, Preservation and Detection on Earth and Beyond
National Aeronautics and Space Administration NASA Astrobiology Institute Annual Science Report 2016 Team Report: Foundations of Complex Life: Evolution, Preservation and Detection on Earth and Beyond, Massachusetts Institute of Technology Foundations of Complex Life Evolution, Preservation and Detection on Earth and Beyond Lead Institution: Massachusetts Institute of Technology Team Overview Foundations of Complex Life is a research project investigating the early evolution and preservation of complex life on Earth. We seek insight into the early evolution and preservation of complex life by refining our ability to identify evidence of environmental and biological change in the late Mesoproterozoic to Neoproterozoic eras. Better understanding how signatures of life and environment are preserved will guide how and where to look for evidence for life elsewhere in the universe—directly supporting the Curiosity mission on Mars and helping set strategic goals for future explorations of the Solar System and studies of the early Earth. Our Team pursues these questions under five themes: I. The earliest history of animals: We use methods from molecular biology, experimental taphonomy, and paleontology to explore what caused the early divergence of animals. Principal Investigator: II. Paleontology, sedimentology, and geochemistry: We track the origin of complex Roger Summons protists and animals from their biologically simple origins by documenting the stratigraphy, isotopic records, and microfossil assemblages of well-preserved rock successions from 1200 to 650 million years ago. III. A preservation-induced oxygen tipping point: We investigate how changes in the preservation of organic carbon may have driven the Neoproterozoic oxygenation of the oceans coincident with the appearance of complex life. -
Quantification of Peptide Bond Types in Human Proteome Indicates How
ics om & B te i ro o P in f f o o r l m Nahalka, J Proteomics Bioinform 2011, 4:8 a Journal of a n t r i c u s DOI: 10.4172/jpb.1000184 o J ISSN: 0974-276X Proteomics & Bioinformatics Research Article Article OpenOpen Access Access Quantification of Peptide Bond Types in Human Proteome Indicates How DNA Codons were Assembled at Prebiotic Conditions Jozef Nahalka1,2* 1Institute of Chemistry, Center for Glycomics, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84538 Bratislava, Slovak Republic 2Institute of Chemistry, Center of excellence for white-green biotechnology, Slovak Academy of Sciences, Trieda Andreja Hlinku 2, SK-94976 Nitra, Slovak Republic Abstract [GADV]-protein world hypothesis [1] leaded me to quantification of decapeptides assembled from G, A, V, D in human proteome. The G, A, V, and D amino acids were related to the nucleotides Guanine (g), Cystosine (c), Uracil (u), and Adenine (a). The search revealed agreement with the genetic code. The types of prebiotic peptide bonds represent probably the first selection power that established the base order in the codons. The genetic code underwent three phases of formation, which explain why modern codons have their particular order of nucleotides: the monobase, dibase and the modern phase (tribase). Sequence alignments and 3D structures of aminoacyl-tRNA synthetases confirm the depicted picture of “relatedness” and the picture indicates how “relatedness” is used by aminoacyl-tRNA synthetases for navigation into and within of the C-terminal anticodon-binding domain. The findings presented here illustrate the novel concept of possible translation of the amino acid sequence into a nucleotide sequence that can be in interactive or contrary mode regarding to desired protein-RNA interactions. -
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BIO Web of Conferences 4, 00014 (2015) DOI: 10.1051/bioconf/20150400014 C Owned by the authors, published by EDP Sciences, 2015 From neonts to filionts and their progenies... Biodiversity draws its origins from the origins of life itself Marie-Christine Maurela Institut de Systématique, Évolution, Biodiversité (ISYEB - UMR 7205 – CNRS, MNHN, UPMC, EPHE), Muséum national d’Histoire naturelle, Sorbonne Universités, 45 rue Buffon, CP. 50, 75005 Paris, France “Should the question of the priority of the egg over the chicken, or of the chicken over the egg disturb you, it is because you assume that animals were originally what they are to-day; what madness!" The dream of d’Alembert, 1760, Denis Diderot Abstract. Since the origins, different modes of life exist. Indeed it is difficult to imagine how things could have been constructed by a single event that would have marked the birth of life. A brief historical background of the subject will be presented here. Then, we shall wander through the history of the discoveries that have led the way of experimental science over the last 150 years and shall dwell on one of the major paradigms, that of the RNA World. This paradigm illustrates the path followed by the living that tries all possible means when expressed at the molecular level as simple free molecule leading to RNA fragments and to modern subviral particles such as viroids then to ramifications and compartments. Between the ancient and the modern RNA world we underline how environment talks to molecules leading to the global living tissus which establish the ground of biodiversity. -
Chemical Evolution Theory of Life's Origins the Lattimer, AST 248, Lecture 13 – P.2/20 Organics
Chemical Evolution Theory of Life's Origins 1. the synthesis and accumulation of small organic molecules, or monomers, such as amino acids and nucleotides. • Production of glycine (an amino acid) energy 3HCN+2H2O −→ C2H5O2N+CN2H2. • Production of adenine (a base): 5 HCN → C5H5N5, • Production of ribose (a sugar): 5H2CO → C5H10O5. 2. the joining of these monomers into polymers, including proteins and nucleic acids. Bernal showed that clay-like materials could serve as sites for polymerization. 3. the concentration of these molecules into droplets, called protobionts, that had chemical characteristics different from their surroundings. This relies heavily on the formation of a semi-permeable membrane, one that allows only certain materials to flow one way or the other through it. Droplet formation requires a liquid with a large surface tension, such as water. Membrane formation naturally occurs if phospholipids are present. 4. The origin of heredity, or a means of relatively error-free reproduction. It is widely, but not universally, believed that RNA-like molecules were the first self-replicators — the RNA world hypothesis. They may have been preceded by inorganic self-replicators. Lattimer, AST 248, Lecture 13 – p.1/20 Acquisition of Organic Material and Water • In the standard model of the formatio of the solar system, volatile materials are concentrated in the outer solar system. Although there is as much carbon as nearly all other heavy elements combined in the Sun and the bulk of the solar nebula, the high temperatures in the inner solar system have lead to fractional amounts of C of 10−3 of the average. -
Rowan C. Martindale Curriculum Vitae Associate Professor (Invertebrate Paleontology) at the University of Texas at Austin
ROWAN C. MARTINDALE CURRICULUM VITAE ASSOCIATE PROFESSOR (INVERTEBRATE PALEONTOLOGY) AT THE UNIVERSITY OF TEXAS AT AUSTIN Department of Geological Sciences E-mail: [email protected] Jackson School of Geosciences Website: www.jsg.utexas.edu/martindale/ 2275 Speedway Stop C9000 Orchid ID: 0000-0003-2681-083X Austin, TX 78712-1722 Phone: 512-475-6439 Office: JSG 3.216A RESEARCH INTERESTS The overarching theme of my work is the connection between Earth and life through time, more precisely, understanding ancient (Mesozoic and Cenozoic) ocean ecosystems and the evolutionary and environmental events that shaped them. My research is interdisciplinary, (paleontology, sedimentology, biology, geochemistry, and oceanography) and focuses on: extinctions and carbon cycle perturbation events (e.g., Oceanic Anoxic Events, acidification events); marine (paleo)ecology and reef systems; the evolution of reef builders (e.g., coral photosymbiosis); and exceptionally preserved fossil deposits (Lagerstätten). ACADEMIC APPOINTMENTS Associate Professor, University of Texas at Austin September 2020 to Present Assistant Professor, University of Texas at Austin August 2014 to August 2020 Postdoctoral Researcher, Harvard University August 2012 to July 2014 Department of Organismic and Evolutionary Biology; Mentor: Dr. Andrew H. Knoll. EDUCATION Doctorate, University of Southern California 2007 to 2012 Dissertation: “Paleoecology of Upper Triassic reef ecosystems and their demise at the Triassic-Jurassic extinction, a potential ocean acidification event”. Advisor: Dr. David J. Bottjer, degree conferred August 7th, 2012. Bachelor of Science Honors Degree, Queen’s University 2003 to 2007 Geology major with a general concentration in Biology (Geological Sciences Medal Winner). AWARDS AND RECOGNITION Awards During Tenure at UT Austin • 2019 National Science Foundation CAREER Award: Awarded to candidates who are judged to have the potential to serve as academic role models in research and education. -
Some Philosophical Questions About Paleontology and Their Practica1 Consequences
ACTA GEOLOGICA HISPANICA. Concept and method in Paleontology. 16 (1981) nos 1-2, pags. 7-23 Some philosophical questions about paleontology and their practica1 consequences by Miquel DE RENZI Depto. de Geología, Facultad de Ciencias Biológicas, Universidad de Valencia. Burjassot (Valencia). This papcr attempts to objectively discuss the actual state ofpaleontology. The En aquest treball s'ha intentat fer un balanc d'alguns aspectes de I'estat de la progress of this science stood still somewhat during the latter part of the last paleontologia. La historia de la paleontologia mostra un estancarnent a les century which caused it to develop apart from the biological sciences. an area to darreries del segle passac aquest estancament va Fer que la nostra ciencia s'anes which it is naturally tied. As aconsequence, this bruought a long-term stagnation, allunyant cada cop mes de I'area de les ciencies bii~logiques,amb les qualsestava because biology, dunng this century, has made great progress and paleontology lligada naturalment AixO va portar, com a conseqüencia, un important has not During the last 20 years paleontology as a science hasrecuperatedsome endarreriment, car la biologia, durant aquest segle, ha donat un gran pas of this loss, but we as scientists need to be careful in various aspects of its endavant, mentre que aquest no ha estat el cas de lapaleontologia Al nostre pais development -i possiblement a molts d'altres- la paleontologia es, fonamentalment, un estn per datar estrats. Tanmateix, un mal estri, car la datació es basadaen les especies fossils i la seva determinació es fonamenta en el ccncepte d'especie biolbgica; els fossils pero en moltes ocasions, són utilitzats mes aviat com si fossin segells o monedes. -
Specifications Guide Americas Petrochemicals Latest Update: July 2020
Specifications Guide Americas Petrochemicals Latest update: July 2020 Definitions of the trading locations for which Platts publishes daily indexes or assessments 2 Olefins 3 US aromatics 6 Latin American aromatics 8 US polymers 10 Latin American polymers 13 US intermediates 16 US hydrocarbon solvents 17 US chlor alkali 18 US oxygenated solvents 19 Liquid and gas chemical freight 21 Global petrochemical indices 22 Revision history 23 www.spglobal.com/platts Specifications Guide Americas Petrochemicals: July 2020 DEFINITIONS OF THE TRADING LOCATIONS FOR WHICH PLATTS PUBLISHES DAILY INDEXES OR ASSESSMENTS The following specifications guide contains the primary specifications for S&P Global Platts petrochemical assessments in the Americas. All the assessments listed here employ Platts Assessments Methodology, as published at https://www.spglobal.com/platts/plattscontent/_assets/_files/en/our-methodology/methodology-specifications/platts-assessments-methodology-guide.pdf. These guides are designed to give Platts subscribers as much information as possible about a wide range of methodology and specification questions. This guide is current at the time of publication. Platts may issue further updates and enhancements to this methodology and will announce these to subscribers through its usual publications of record. Such updates will be included in the next version of this guide. Platts editorial staff and managers are available to provide guidance when assessment issues require clarification. OLEFINS Assessment CURRENCY CODE Mavg Wavg TYPE -
SVP's Letter to Editors of Journals and Publishers on Burmese Amber And
Society of Vertebrate Paleontology 7918 Jones Branch Drive, Suite 300 McLean, VA 22102 USA Phone: (301) 634-7024 Email: [email protected] Web: www.vertpaleo.org FEIN: 06-0906643 April 21, 2020 Subject: Fossils from conflict zones and reproducibility of fossil-based scientific data Dear Editors, We are writing you today to promote the awareness of a couple of troubling matters in our scientific discipline, paleontology, because we value your professional academic publication as an important ‘gatekeeper’ to set high ethical standards in our scientific field. We represent the Society of Vertebrate Paleontology (SVP: http://vertpaleo.org/), a non-profit international scientific organization with over 2,000 researchers, educators, students, and enthusiasts, to advance the science of vertebrate palaeontology and to support and encourage the discovery, preservation, and protection of vertebrate fossils, fossil sites, and their geological and paleontological contexts. The first troubling matter concerns situations surrounding fossils in and from conflict zones. One particularly alarming example is with the so-called ‘Burmese amber’ that contains exquisitely well-preserved fossils trapped in 100-million-year-old (Cretaceous) tree sap from Myanmar. They include insects and plants, as well as various vertebrates such as lizards, snakes, birds, and dinosaurs, which have provided a wealth of biological information about the ‘dinosaur-era’ terrestrial ecosystem. Yet, the scientific value of these specimens comes at a cost (https://www.nytimes.com/2020/03/11/science/amber-myanmar-paleontologists.html). Where Burmese amber is mined in hazardous conditions, smuggled out of the country, and sold as gemstones, the most disheartening issue is that the recent surge of exciting scientific discoveries, particularly involving vertebrate fossils, has in part fueled the commercial trading of amber.