Localization of SUCLA2 and SUCLG2 Subunits of Succinyl Coa Ligase
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Two Transgenic Mouse Models for Β-Subunit Components of Succinate-Coa Ligase Yielding Pleiotropic Metabolic Alterations
Two transgenic mouse models for -subunit components of succinate-CoA ligase yielding pleiotropic metabolic alterations Kacso, Gergely; Ravasz, Dora; Doczi, Judit; Németh, Beáta; Madgar, Ory; Saada, Ann; Ilin, Polina; Miller, Chaya; Ostergaard, Elsebet; Iordanov, Iordan; Adams, Daniel; Vargedo, Zsuzsanna; Araki, Masatake; Araki, Kimi; Nakahara, Mai; Ito, Haruka; Gál, Aniko; Molnár, Mária J; Nagy, Zsolt; Patocs, Attila; Adam-Vizi, Vera; Chinopoulos, Christos Published in: Biochemical Journal DOI: 10.1042/BCJ20160594 Publication date: 2016 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): Kacso, G., Ravasz, D., Doczi, J., Németh, B., Madgar, O., Saada, A., Ilin, P., Miller, C., Ostergaard, E., Iordanov, I., Adams, D., Vargedo, Z., Araki, M., Araki, K., Nakahara, M., Ito, H., Gál, A., Molnár, M. J., Nagy, Z., ... Chinopoulos, C. (2016). Two transgenic mouse models for -subunit components of succinate-CoA ligase yielding pleiotropic metabolic alterations. Biochemical Journal, 473(20), 3463-3485. https://doi.org/10.1042/BCJ20160594 Download date: 02. okt.. 2021 Biochemical Journal (2016) 473 3463–3485 DOI: 10.1042/BCJ20160594 Research Article Two transgenic mouse models for β-subunit components of succinate-CoA ligase yielding pleiotropic metabolic alterations Gergely Kacso1,2, Dora Ravasz1,2, Judit Doczi1,2, Beáta Németh1,2, Ory Madgar1,2, Ann Saada3, Polina Ilin3, Chaya Miller3, Elsebet Ostergaard4, Iordan Iordanov1,5, Daniel Adams1,2, Zsuzsanna Vargedo1,2, Masatake -
Whole-Genome Microarray Detects Deletions and Loss of Heterozygosity of Chromosome 3 Occurring Exclusively in Metastasizing Uveal Melanoma
Anatomy and Pathology Whole-Genome Microarray Detects Deletions and Loss of Heterozygosity of Chromosome 3 Occurring Exclusively in Metastasizing Uveal Melanoma Sarah L. Lake,1 Sarah E. Coupland,1 Azzam F. G. Taktak,2 and Bertil E. Damato3 PURPOSE. To detect deletions and loss of heterozygosity of disease is fatal in 92% of patients within 2 years of diagnosis. chromosome 3 in a rare subset of fatal, disomy 3 uveal mela- Clinical and histopathologic risk factors for UM metastasis noma (UM), undetectable by fluorescence in situ hybridization include large basal tumor diameter (LBD), ciliary body involve- (FISH). ment, epithelioid cytomorphology, extracellular matrix peri- ϩ ETHODS odic acid-Schiff-positive (PAS ) loops, and high mitotic M . Multiplex ligation-dependent probe amplification 3,4 5 (MLPA) with the P027 UM assay was performed on formalin- count. Prescher et al. showed that a nonrandom genetic fixed, paraffin-embedded (FFPE) whole tumor sections from 19 change, monosomy 3, correlates strongly with metastatic death, and the correlation has since been confirmed by several disomy 3 metastasizing UMs. Whole-genome microarray analy- 3,6–10 ses using a single-nucleotide polymorphism microarray (aSNP) groups. Consequently, fluorescence in situ hybridization were performed on frozen tissue samples from four fatal dis- (FISH) detection of chromosome 3 using a centromeric probe omy 3 metastasizing UMs and three disomy 3 tumors with Ͼ5 became routine practice for UM prognostication; however, 5% years’ metastasis-free survival. to 20% of disomy 3 UM patients unexpectedly develop metas- tases.11 Attempts have therefore been made to identify the RESULTS. Two metastasizing UMs that had been classified as minimal region(s) of deletion on chromosome 3.12–15 Despite disomy 3 by FISH analysis of a small tumor sample were found these studies, little progress has been made in defining the key on MLPA analysis to show monosomy 3. -
A Turkish Patient with Succinyl-Coa:3-Oxoacid Coa
Original Article Journal of Inborn Errors of Metabolism & Screening 2016, Volume 4: 1–5 A Turkish Patient With ª The Author(s) 2016 DOI: 10.1177/2326409816651281 Succinyl-CoA:3-Oxoacid CoA iem.sagepub.com Transferase Deficiency Mimicking Diabetic Ketoacidosis Sahin Erdol, MD1, Mehmet Ture, MD2, Tahsin Yakut, PhD2, Halil Saglam, PhD1, Hideo Sasai, MD3, Elsayed Abdelkreem, MD3, Hiroki Otsuka, MD3, and Toshiyuki Fukao, MD, PhD3 Abstract Succinyl-CoA:3-oxoacid CoA transferase (SCOT) deficiency is an autosomal recessive disorder of ketone body utilization that is clinically characterized with intermittent ketoacidosis crises. We report here the second Turkish case with SCOT deficiency. She experienced 3 ketoacidotic episodes: The first ketoacidotic crisis mimicked diabetic ketoacidosis because of the associated hyperglycemia. Among patients with SCOT deficiency, the blood glucose levels at the first crises were variable, and this case had the highest ever reported blood glucose level. She is a compound heterozygote with 2 novel mutations, c.517A>G (K173E) and c.1543A>G (M515V), in exons 5 and 17 of the OXCT1 gene, respectively. In patient’s fibroblasts, SCOT activity was deficient and, by immunoblot analysis, SCOT protein was much reduced. The patient attained normal development and had no permanent ketosis. The accurate diagnosis of SCOT deficiency in this case had a vital impact on the management strategy and outcome. Keywords succinyl-CoA:3-oxoacid CoA transferase, deficiency, mimicking, diabetic ketoacidosis, Turkey Introduction deficiency. We herein describe a Turkish SCOT-deficient patient whose first episode mimicked diabetic ketoacidosis Succinyl-CoA:3-oxoacid CoA transferase (SCOT) deficiency because of the associated hyperglycemia. -
Identification and Characterization of TPRKB Dependency in TP53 Deficient Cancers
Identification and Characterization of TPRKB Dependency in TP53 Deficient Cancers. by Kelly Kennaley A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Molecular and Cellular Pathology) in the University of Michigan 2019 Doctoral Committee: Associate Professor Zaneta Nikolovska-Coleska, Co-Chair Adjunct Associate Professor Scott A. Tomlins, Co-Chair Associate Professor Eric R. Fearon Associate Professor Alexey I. Nesvizhskii Kelly R. Kennaley [email protected] ORCID iD: 0000-0003-2439-9020 © Kelly R. Kennaley 2019 Acknowledgements I have immeasurable gratitude for the unwavering support and guidance I received throughout my dissertation. First and foremost, I would like to thank my thesis advisor and mentor Dr. Scott Tomlins for entrusting me with a challenging, interesting, and impactful project. He taught me how to drive a project forward through set-backs, ask the important questions, and always consider the impact of my work. I’m truly appreciative for his commitment to ensuring that I would get the most from my graduate education. I am also grateful to the many members of the Tomlins lab that made it the supportive, collaborative, and educational environment that it was. I would like to give special thanks to those I’ve worked closely with on this project, particularly Dr. Moloy Goswami for his mentorship, Lei Lucy Wang, Dr. Sumin Han, and undergraduate students Bhavneet Singh, Travis Weiss, and Myles Barlow. I am also grateful for the support of my thesis committee, Dr. Eric Fearon, Dr. Alexey Nesvizhskii, and my co-mentor Dr. Zaneta Nikolovska-Coleska, who have offered guidance and critical evaluation since project inception. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Complex I Deficiency Due to Loss of Ndufs4 in the Brain Results
Complex I deficiency due to loss of Ndufs4 in the brain results in progressive encephalopathy resembling Leigh syndrome Albert Quintanaa,1, Shane E. Krusea,1, Raj P. Kapurb, Elisenda Sanzc, and Richard D. Palmitera,2 aHoward Hughes Medical Institute and Department of Biochemistry, University of Washington, Seattle, WA 98195; bDepartment of Laboratories, Seattle Children’s Hospital, Seattle, WA 98105; and cDepartment of Pharmacology, University of Washington, Seattle, WA 98195 Contributed by Richard D. Palmiter, May 5, 2010 (sent for review April 22, 2010) To explore the lethal, ataxic phenotype of complex I deficiency in least one intact Ndufs4 allele are indistinguishable from WT Ndufs4 knockout (KO) mice, we inactivated Ndufs4 selectively in mice, and they are sometimes used interchangeably with WT as neurons and glia (NesKO mice). NesKO mice manifested the same controls (CT). To examine the role of the CNS in pathology, we symptoms as KO mice including retarded growth, loss of motor restricted the inactivation of Ndufs4 gene to neurons and lox/lox ability, breathing abnormalities, and death by ∼7 wk. Progressive astroglial cells by crossing the Ndufs4 mice with mice neuronal deterioration and gliosis in specific brain areas corre- expressing Cre recombinase from the Nestin locus (19) to create sponded to behavioral changes as the disease advanced, with mice that we refer to as NesKO mice. We confirmed that Nestin- early involvement of the olfactory bulb, cerebellum, and vestibular Cre results in recombination primarily in the CNS by crossing the nuclei. Neurons, particularly in these brain regions, had aberrant mice with a Rosa26-reporter line and by PCR analysis of DNA mitochondrial morphology. -
Novel Compound Heterozygous OXCT1 Mutations Causing Succinyl-Coa:3-Ketoacid Coa Transferase Deficiency
Case Report Yonsei Med J 2019 Mar;60(3):308-311 https://doi.org/10.3349/ymj.2019.60.3.308 pISSN: 0513-5796 · eISSN: 1976-2437 A Rare Cause of Life-Threatening Ketoacidosis: Novel Compound Heterozygous OXCT1 Mutations Causing Succinyl-CoA:3-Ketoacid CoA Transferase Deficiency Young A Kim1,2, Seong Heon Kim1, Chong Kun Cheon1, and Yoo-Mi Kim3 1Department of Pediatrics, Pusan National University Children’s Hospital, Yangsan; 2Research Institute for Convergence of Biomedical Science and Technology, Pusan National University Yangsan Hospital, Yangsan; 3Department of Pediatrics, Chungnam National University Hospital, College of Medicine, Chungnam National University, Daejeon, Korea. Succinyl-CoA:3-ketoacid CoA transferase (SCOT) deficiency is a rare inborn error of ketone body utilization, characterized by ep- isodic or permanent ketosis. SCOT deficiency is caused by mutations in the OXCT1 gene, which is mapped to 5p13 and consists of 17 exons. A 12-month-old girl presented with severe ketoacidosis and was treated with continuous renal replacement therapy. She had two previously unrecognized mild-form episodes of ketoacidosis followed by febrile illness. While high levels of ketone bodies were found in her blood and urine, other laboratory investigations, including serum glucose, were unremarkable. We identified novel compound heterozygous mutations in OXCT1:c.1118T>G (p.Ile373Ser) and a large deletion ranging from exon 8 to 16 through targeted exome sequencing and microarray analysis. This is the first Korean case of SCOT deficiency caused by novel mutations in OXCT1, resulting in life-threatening ketoacidosis. In patients with unexplained episodic ketosis, or high anion gap metabolic acidosis in infancy, an inherited disorder in ketone body metabolism should be suspected. -
DATASHEET USA: [email protected]
DATASHEET USA: [email protected] FOR IN VITRO RESEARCH USE ONLY Europe: [email protected] NOT FOR USE IN HUMANS OR ANIMALS China: [email protected] OXCT1 Polyclonal Anbody Catalog number: 12175-1-AP Background Size: 38 μg/150 μl 3-oxoacid-CoA transferase 1 (OXCT1), encoded by nuclear gene, is a mitochondrial Source: Rabbit CoA transferase required for ketone body degradaon. It catalyzes the transfer of Isotype: IgG CoA from succinyl-CoA to acetoacetate, generang acetoacetyl-CoA. OXCT1 is Synonyms: expressed in brain, heart, and skeletal muscle, but not in liver. This anbody OXCT1; 3 oxoacid CoA specifically recognizes endogenous OXCT1. (21209089) transferase 1, OXCT, OXCT1, SCOT, SCOT s Applications Tested applicaons: ELISA, WB, IHC, IF, IP Cited applicaons: IHC, WB Species specificity: Human,Mouse,Rat; other species not tested. Cited species: Human, mouse Caculated OXCT1 MW: 520aa,56 kDa Observed OXCT1 MW: 56 kDa Posive WB detected in Human brain ssue, human heart ssue, human kidney Immunofluorescent analysis of MCF-7 ssue, human lung ssue, mouse skeletal muscle ssue, cells, using OXCT1 anbody 12175-1- AP at 1:25 diluon and Rhodamine- mouse thymus ssue labeled goat an-rabbit IgG (red). Posive IP detected in Mouse brain ssue Posive IHC detected in Human medulloblastoma ssue Posive IF detected in MCF-7 cells Recommended diluon: WB: 1:1000-1:10000 IP: 1:500-1:5000 IHC: 1:20-1:200 IF: 1:10-1:100 Applicaon key: WB = Western blong, IHC = Immunohistochemistry, IF = Immunofluorescence, IP = Immunoprecipitaon Immunohistochemical of paraffin- embedded human medulloblastoma Immunogen information using 12175-1-AP(SCOT anbody) at diluon of 1:50 (under 10x lens) Immunogen: Ag2818 GenBank accession number: BC009001 Gene ID (NCBI): 5019 Full name: 3-oxoacid CoA transferase 1 Product information Purificaon method: Angen affinity purificaon Storage: PBS with 0.1% sodium azide and 50% glycerol pH o human brain ssue were subjected to 7.3. -
SUCLG2 Identified As Both a Determinator of CSF Ab1– 42 Levels and an Attenuator of Cognitive Decline in Alzheimer's Disease
Human Molecular Genetics, 2014, Vol. 23, No. 24 6644–6658 doi:10.1093/hmg/ddu372 Advance Access published on July 15, 2014 SUCLG2 identified as both a determinator of CSF Ab1– 42 levels and an attenuator of cognitive decline in Alzheimer’s disease Alfredo Ramirez1,2,{,∗, Wiesje M. van der Flier6,7,{, Christine Herold8,{, David Ramonet3,{, Stefanie Heilmann2,4, Piotr Lewczuk9, Julius Popp1, Andre´ Lacour8, Dmitriy Drichel8, Eva Louwersheimer6,7, Markus P. Kummer3,8, Carlos Cruchaga10,11, Per Hoffmann2,4,13, Charlotte 6,7 6,7 9 14 15 Teunissen , Henne Holstege , Johannes Kornhuber , Oliver Peters , Adam C. Naj , Vincent Downloaded from Chouraki16,17,Ce´line Bellenguez18,19,20, Amy Gerrish21, International Genomics of Alzheimer’s Project (IGAP){, Alzheimer’s Disease Neuroimaging Initiative (ADNI)}, Reiner Heun1, Lutz Fro¨ lich22, Michael Hu¨ ll23, Lara Buscemi24, Stefan Herms2,4,13, Heike Ko¨ lsch1, Philip Scheltens6,7, Monique M. Breteler8, Eckart Ru¨ ther25, Jens Wiltfang25, Alison Goate10,12, Frank Jessen1,8, http://hmg.oxfordjournals.org/ Wolfgang Maier1,8, Michael T. Heneka3,8,§, Tim Becker5,8,§ and Markus M. No¨ then2,4,§ 1Department of Psychiatry and Psychotherapy, 2Institute of Human Genetics, 3Clinical Neuroscience Unit, Department of Neurology, 4Department of Genomics, Life & Brain Center, 5Institute for Medical Biometry, Informatics, and Epidemiology, University of Bonn, 53127, Bonn, Germany, 6Department of Neurology and Alzheimer Center, Neuroscience Campus Amsterdam, VU University Medical Center, 1081 HZ, Amsterdam, The Netherlands, -
Mitochondrial Genetics
Mitochondrial genetics Patrick Francis Chinnery and Gavin Hudson* Institute of Genetic Medicine, International Centre for Life, Newcastle University, Central Parkway, Newcastle upon Tyne NE1 3BZ, UK Introduction: In the last 10 years the field of mitochondrial genetics has widened, shifting the focus from rare sporadic, metabolic disease to the effects of mitochondrial DNA (mtDNA) variation in a growing spectrum of human disease. The aim of this review is to guide the reader through some key concepts regarding mitochondria before introducing both classic and emerging mitochondrial disorders. Sources of data: In this article, a review of the current mitochondrial genetics literature was conducted using PubMed (http://www.ncbi.nlm.nih.gov/pubmed/). In addition, this review makes use of a growing number of publically available databases including MITOMAP, a human mitochondrial genome database (www.mitomap.org), the Human DNA polymerase Gamma Mutation Database (http://tools.niehs.nih.gov/polg/) and PhyloTree.org (www.phylotree.org), a repository of global mtDNA variation. Areas of agreement: The disruption in cellular energy, resulting from defects in mtDNA or defects in the nuclear-encoded genes responsible for mitochondrial maintenance, manifests in a growing number of human diseases. Areas of controversy: The exact mechanisms which govern the inheritance of mtDNA are hotly debated. Growing points: Although still in the early stages, the development of in vitro genetic manipulation could see an end to the inheritance of the most severe mtDNA disease. Keywords: mitochondria/genetics/mitochondrial DNA/mitochondrial disease/ mtDNA Accepted: April 16, 2013 Mitochondria *Correspondence address. The mitochondrion is a highly specialized organelle, present in almost all Institute of Genetic Medicine, International eukaryotic cells and principally charged with the production of cellular Centre for Life, Newcastle energy through oxidative phosphorylation (OXPHOS). -
Anti-OXCT1 Antibody (ARG58973)
Product datasheet [email protected] ARG58973 Package: 100 μl anti-OXCT1 antibody Store at: -20°C Summary Product Description Rabbit Polyclonal antibody recognizes OXCT1 Tested Reactivity Hu, Ms, Rat Tested Application IHC-P, WB Host Rabbit Clonality Polyclonal Isotype IgG Target Name OXCT1 Antigen Species Human Immunogen Recombinant fusion protein corresponding to aa. 261-520 of Human OXCT1 (NP_000427.1). Conjugation Un-conjugated Alternate Names OXCT; EC 2.8.3.5; Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; SCOT-s; SCOT; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; 3-oxoacid CoA-transferase 1 Application Instructions Application table Application Dilution IHC-P 1:50 - 1:100 WB 1:500 - 1:2000 Application Note * The dilutions indicate recommended starting dilutions and the optimal dilutions or concentrations should be determined by the scientist. Positive Control Mouse heart Calculated Mw 56 kDa Observed Size 56 kDa Properties Form Liquid Purification Affinity purified. Buffer PBS (pH 7.3), 0.02% Sodium azide and 50% Glycerol. Preservative 0.02% Sodium azide Stabilizer 50% Glycerol Storage instruction For continuous use, store undiluted antibody at 2-8°C for up to a week. For long-term storage, aliquot and store at -20°C. Storage in frost free freezers is not recommended. Avoid repeated freeze/thaw cycles. Suggest spin the vial prior to opening. The antibody solution should be gently mixed before use. www.arigobio.com 1/2 Note For laboratory research only, not for drug, diagnostic or other use. Bioinformation Gene Symbol OXCT1 Gene Full Name 3-oxoacid CoA transferase 1 Background This gene encodes a member of the 3-oxoacid CoA-transferase gene family. -
Succinyl-Coa:3-Ketoacid Coa Transferase Deficiency
Succinyl-CoA:3-ketoacid CoA transferase deficiency Description Succinyl-CoA:3-ketoacid CoA transferase (SCOT) deficiency is an inherited disorder that impairs the body's ability to break down ketones, which are molecules produced in the liver during the breakdown of fats. The signs and symptoms of SCOT deficiency typically appear within the first few years of life. Affected individuals experience episodes of extreme tiredness (lethargy), appetite loss, vomiting, rapid breathing, and, occasionally, seizures. These episodes, which are called ketoacidotic attacks, sometimes lead to coma. About half of affected individuals have a ketoacidotic attack within the first 4 days of life. Affected individuals have no symptoms of the disorder between ketoacidotic attacks. People with SCOT deficiency usually have a permanently elevated level of ketones in their blood (persistent ketosis). If the level of ketones gets too high, which can be brought on by infections, fevers, or periods without food (fasting), a ketoacidotic attack can occur. The frequency of ketoacidotic attacks varies among affected individuals. Frequency The prevalence of SCOT deficiency is unknown. More than 20 cases of this condition have been reported in the scientific literature. Causes Mutations in the OXCT1 gene cause SCOT deficiency. The OXCT1 gene provides instructions for making an enzyme called succinyl-CoA:3-ketoacid CoA transferase ( SCOT). The SCOT enzyme is made in the energy-producing centers of cells ( mitochondria). The enzyme plays a role in the breakdown of ketones, which are an important source of energy during fasting or when energy demands are increased, such as during illness or when exercising. OXCT1 gene mutations result in the production of a SCOT enzyme with little or no function.