Fungi Topics in Biodiversity
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Characterization of Two Undescribed Mucoralean Species with Specific
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 26 March 2018 doi:10.20944/preprints201803.0204.v1 1 Article 2 Characterization of Two Undescribed Mucoralean 3 Species with Specific Habitats in Korea 4 Seo Hee Lee, Thuong T. T. Nguyen and Hyang Burm Lee* 5 Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture and Life Sciences, 6 Chonnam National University, Gwangju 61186, Korea; [email protected] (S.H.L.); 7 [email protected] (T.T.T.N.) 8 * Correspondence: [email protected]; Tel.: +82-(0)62-530-2136 9 10 Abstract: The order Mucorales, the largest in number of species within the Mucoromycotina, 11 comprises typically fast-growing saprotrophic fungi. During a study of the fungal diversity of 12 undiscovered taxa in Korea, two mucoralean strains, CNUFC-GWD3-9 and CNUFC-EGF1-4, were 13 isolated from specific habitats including freshwater and fecal samples, respectively, in Korea. The 14 strains were analyzed both for morphology and phylogeny based on the internal transcribed 15 spacer (ITS) and large subunit (LSU) of 28S ribosomal DNA regions. On the basis of their 16 morphological characteristics and sequence analyses, isolates CNUFC-GWD3-9 and CNUFC- 17 EGF1-4 were confirmed to be Gilbertella persicaria and Pilobolus crystallinus, respectively.To the 18 best of our knowledge, there are no published literature records of these two genera in Korea. 19 Keywords: Gilbertella persicaria; Pilobolus crystallinus; mucoralean fungi; phylogeny; morphology; 20 undiscovered taxa 21 22 1. Introduction 23 Previously, taxa of the former phylum Zygomycota were distributed among the phylum 24 Glomeromycota and four subphyla incertae sedis, including Mucoromycotina, Kickxellomycotina, 25 Zoopagomycotina, and Entomophthoromycotina [1]. -
Text Ch 31 Bullet Points: • Fungi – Our Sister Group! • Characteristics
Overview of Lecture: Fungi Read: Text ch 31 Bullet Points: V fungi – our sister group! V characteristics V fungusfocus.com V doctorfungus.com the biology of antifungal agents V new phylogeny (dang!!!) V microsporidia V chytrids V zygomycota – bread molds V glomeromycota - mycorrhizzae V ascomycota – yeasts & morrels V basidiomycota - mushrooms NATURE | REVIEW Emerging fungal threats to animal, plant and ecosystem health MC Fisher et al. Nature 484, 186–194 (12 April 2012) doi:10.1038/nature10947 The past two decades have seen an increasing number of virulent infectious diseases in natural populations and managed landscapes. In both animals and plants, an unprecedented number of fungal and fungal-like diseases have recently caused some of the most severe die-offs and extinctions ever witnessed in wild species, and are jeopardizing food security. Human activity is intensifying fungal disease dispersal by modifying natural environments and thus creating new opportunities for evolution. We argue that nascent fungal infections will cause increasing attrition of biodiversity, with wider implications for human and ecosystem health, unless steps are taken to tighten biosecurity worldwide. a. Disease alerts in the ProMED database for pathogenic fungi of animals and plants. c, Relative proportions of species extinction and/or extirpation events for major classes of infectious disease agents Fungi are the sister group of animals and part of the eukaryotic crown group that radiated about a billion years ago … ... a monophyletic group that shares some characters with animals such as chitinous structures {fungi have chitinous cell walls, unlike animals; arthropods secrete extracellular chitin sheets that are more like finger nails than cell walls} storage of glycogen, and mitochondrial UGA coding for tryptophan. -
Introduction to Mycology
INTRODUCTION TO MYCOLOGY The term "mycology" is derived from Greek word "mykes" meaning mushroom. Therefore mycology is the study of fungi. The ability of fungi to invade plant and animal tissue was observed in early 19th century but the first documented animal infection by any fungus was made by Bassi, who in 1835 studied the muscardine disease of silkworm and proved the that the infection was caused by a fungus Beauveria bassiana. In 1910 Raymond Sabouraud published his book Les Teignes, which was a comprehensive study of dermatophytic fungi. He is also regarded as father of medical mycology. Importance of fungi: Fungi inhabit almost every niche in the environment and humans are exposed to these organisms in various fields of life. Beneficial Effects of Fungi: 1. Decomposition - nutrient and carbon recycling. 2. Biosynthetic factories. The fermentation property is used for the industrial production of alcohols, fats, citric, oxalic and gluconic acids. 3. Important sources of antibiotics, such as Penicillin. 4. Model organisms for biochemical and genetic studies. Eg: Neurospora crassa 5. Saccharomyces cerviciae is extensively used in recombinant DNA technology, which includes the Hepatitis B Vaccine. 6. Some fungi are edible (mushrooms). 7. Yeasts provide nutritional supplements such as vitamins and cofactors. 8. Penicillium is used to flavour Roquefort and Camembert cheeses. 9. Ergot produced by Claviceps purpurea contains medically important alkaloids that help in inducing uterine contractions, controlling bleeding and treating migraine. 10. Fungi (Leptolegnia caudate and Aphanomyces laevis) are used to trap mosquito larvae in paddy fields and thus help in malaria control. Harmful Effects of Fungi: 1. -
FUNGI Why Care?
FUNGI Fungal Classification, Structure, and Replication -Commonly present in nature as saprophytes, -transiently colonising or etiological agenses. -Frequently present in biological samples. -They role in pathogenesis can be difficult to determine. Why Care? • Fungi are a cause of nosocomial infections. • Fungal infections are a major problem in immune suppressed people. • Fungal infections are often mistaken for bacterial infections, with fatal consequences. Most fungi live harmlessly in the environment, but some species can cause disease in the human host. Patients with weakened immune function admitted to hospital are at high risk of developing serious, invasive fungal infections. Systemic fungal infections are a major problem among critically ill patients in acute care settings and are responsible for an increasing proportion of healthcare- associated infections THE IMPORTANCE OF FUNGI • saprobes • symbionts • commensals • parasites The fungi represent a ubiquitous and diverse group of organisms, the main purpose of which is to degrade organic matter. All fungi lead a heterotrophic existence as saprobes (organisms that live on dead or decaying matter), symbionts (organisms that live together and in which the association is of mutual advantage), commensals (organisms living in a close relationship in which one benefits from the relationship and the other neither benefits nor is harmed), or as parasites (organisms that live on or within a host from which they derive benefits without making any useful contribution in return; in the case of pathogens, the relationship is harmful to the host). Fungi have emerged in the past two decades as major causes of human disease, especially among those individuals who are immunocompromised or hospitalized with serious underlying diseases. -
What Are Fungi?
Medical Mycology (BIOL 4849) Summer 2007 Dr. Cooper What are Fungi? Fungi in the Tree of Life • Living organisms on earth first arose about 3.5 billion years ago – Prokaryotic – Anaerobic • Oldest fossils of fungi are about 460 million years old • Coincides with the rapid expansion of multi-cellular organisms • Major multicellular eukaryotes are divided into Kingdoms – Animals – Plants – Fungi • Each of these three kingdoms differ in their basic cellular structure and mode of nutrition (defined by Whittaker, 1969) – Plants - photosynthetic, cellulosic cell walls – Animals - digestive systems, wall-less cells – Fungi - absorptive nutrition, chitinous walls • The estimates for the expansion of multicellular organisms are based upon phylogenetic analyses of Carl Woese – Examined ribosomal RNA (rRNA) • Present in prokaryotes and eukaryotes • Relatively stable, but changes occur over time; thereby acting as a chronometer – Distinguished three separate groups (Domains) of living organisms • Domains - rRNA sequence differences correlate with differences in cellular structure and physiology – Bacteria - “true bacteria” – Archaea - “ancient prokaryotes” – Eucarya - eukaryotes • Taxonomic grouping of “Kingdom” lies beneath that of “Domain” • Though the fossil evidence suggests fungi were present on earth about 450 million years ago, aquatic fungi (Phylum Chytridiomycota) most likely were present about a million years before this time Page 1 of 15 Copyright © 2007 Chester R. Cooper, Jr. Medical Mycology (BIOL 4849) Lecture 1, Summer 2007 • About -
MOLD and MILDEW – an OVERVIEW/MARINE UPHOLSTERY Mold and Mildew Problems in the Marine Or Exterior Likely Element to Control Is Moisture
performance products PERFORMANCE PRODUCTS DIVISION MOLD AND MILDEW – AN OVERVIEW/MARINE UPHOLSTERY Mold and mildew problems in the marine or exterior likely element to control is moisture. Keep a surface upholstery, wallcovering, paint, tarpaulin, swimming dry and the ambient air dry, and you can break the pool and shower curtain markets, to name a few, link in the Mildew Square. In actuality, this is very have been well documented over the last 25 years. difficult. Marine upholstery may be dry when one sits The objective of this overview is to review the causes on it, but it is constantly exposed to rain, splashes and and cures of these unsightly and odoriferous wet bathing suits. problems and suggest actions to reduce their impact on the quality of goods as perceived by the Spores consumers. Food THE CAUSE – MICROORGANISMS The two principal causes of offensive odors and Water unsightly stains and growths are bacteria and fungi, Warmth commonly called microorganisms. Bacteria are simple, single-celled organisms. Fungi, referred to as mold and mildew, are significantly more complex. A A COMPLEX PROBLEM – AN EXAMPLE subset of fungal organisms is a type that produces One can observe an unsightly stain, dirt, or mildew colored byproducts as part of its digestive process. growth on the surface of a marine seat and ask the These byproducts are recognized as stains and are question, “How did it get there?” Dirt carried by the typically pink, yellow, purple or black. All wind or sudden shower will carry the spores or seeds, microorganisms require a source of energy; carbon inoculating the surface. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Biology of Fungi, Lecture 2: the Diversity of Fungi and Fungus-Like Organisms
Biology of Fungi, Lecture 2: The Diversity of Fungi and Fungus-Like Organisms Terms You Should Understand u ‘Fungus’ (pl., fungi) is a taxonomic term and does not refer to morphology u ‘Mold’ is a morphological term referring to a filamentous (multicellular) condition u ‘Mildew’ is a term that refers to a particular type of mold u ‘Yeast’ is a morphological term referring to a unicellular condition Special Lecture Notes on Fungal Taxonomy u Fungal taxonomy is constantly in flux u Not one taxonomic scheme will be agreed upon by all mycologists u Classical fungal taxonomy was based primarily upon morphological features u Contemporary fungal taxonomy is based upon phylogenetic relationships Fungi in a Broad Sense u Mycologists have traditionally studied a diverse number of organisms, many not true fungi, but fungal-like in their appearance, physiology, or life style u At one point, these fungal-like microbes included the Actinomycetes, due to their filamentous growth patterns, but today are known as Gram-positive bacteria u The types of organisms mycologists have traditionally studied are now divided based upon phylogenetic relationships u These relationships are: Q Kingdom Fungi - true fungi Q Kingdom Straminipila - “water molds” Q Kingdom Mycetozoa - “slime molds” u Kingdom Fungi (Mycota) Q Phylum: Chytridiomycota Q Phylum: Zygomycota Q Phylum: Glomeromycota Q Phylum: Ascomycota Q Phylum: Basidiomycota Q Form-Phylum: Deuteromycota (Fungi Imperfecti) Page 1 of 16 Biology of Fungi Lecture 2: Diversity of Fungi u Kingdom Straminiplia (Chromista) -
BASIDIOMYCOTINA and ITS CLASSIFICATION Dr
BASIDIOMYCOTINA AND ITS CLASSIFICATION Dr. Vishnupriya Sharma Department of Botany B.Sc sem II, paper 2,Course code 2BOT T2 Title of the Paper- Mycology and Phytopathology Basidiomycotina Diagnostic features of Basidiomycotina 1. Basidiomycotina comprise of about 550 genera 15,000 species 2.Many of them are saprophytes while others are parasitic. These includes mushrooms, toad stools, puff balls, stink horns, shelf fungi, bracket fungi, rusts, and smuts. 3.They have Septate mycelium ,non motile spores and are characterised by the production of a club-shaped structure, known as Basidium 4. Basidium is a cell in which karyogamy and meiosis occurs. However, the basidium produces usually four spores externally known as basidiospores Vegetative structure: The vegetative body is well developed mycelium which consists of septate, branched mass of hyphae which grow on or in the substratum obtaining nourishment from host. Sometimes, a number of hyphae become interwoven to form thick strands of mycelium which are called rhizomorphs. In parasitic species the hyphae are either intercellular, sending haustoria into the cells or intracellular. The colour of the hyphae varies according to the species through three stages before the completion of life cycle. Three stages of development of mycelium The three stages are the primary, the secondary and the tertiary mycelium. The primary mycelium consists of hyphae with uninucleate cells. It develops from the germinating basidiospore. When young, the primary mycelium is multinucleate, but later on, due to the formation of septa, it divides into uninucleate cells. The primary mycelium constitutes the haplophase and never forms basidia and basidiospores. The primary mycelium may produce oidia which are uninucleate spores, formed on oidiophores. -
BIO 201 Unit 1 Introduction to Microbiology
Professor Diane Hilker I. Exp. 3: Collection of Microbes 1. Observe different types of microbial colonies 2. Identification of molds 3. Isolation of molds 4. Isolation of bacteria I. Exp. 3: Collection of Microbes 1. Observe different types of microbial colonies 2. Identification of molds 3. Isolation of molds 4. Isolation of bacteria 1. Microbial Colonies ◦ Colony: a visible mass of microbial cells originating from one cell. ◦ (2) Types Large, fuzzy, hairy, 3D, growing upward & touching the lid, various colors-MOLD Small, creamy, moist, circular, various colors-BACTERIA 1. Microbial Colonies Mold Colonies Bacterial Colonies Culture Media Used ◦ Potato Dextrose Agar (PDA) Supports more mold growth pH 5.2-acidic High in carbohydrates ◦ Nutrient Agar (NA) Supports more bacterial growth pH 7.0-neutral High in proteins I. Exp. 3: Collection of Microbes 1. Observe different types of microbial colonies 2. Identification of molds 3. Isolation of molds 4. Isolation of bacteria Molds Vegetative Structures: obtains nutrients ◦ Absorb nutrients thorough cell wall ◦ Can’t identify a mold based on vegetative structure • Thallus: body of mold consisting of filaments • Hyphae or hypha: filaments-multicellular • Can be very long; elongate at the tips • Septa or septum: cross-walls • Coenocytic hyphae: no cross-walls • Mycelium: filamentous mass visible to the eye Fig. 12.1 Textbook Molds Reproductive Structures: Spores ◦ How molds are identified ◦ 2 Types Sexual: genetic exchange between 2 parents (meiosis) Not as common in nature To be discussed in lecture Asexual: no genetic exchange (mitosis) More common in nature To be discussed in lab Asexual Spores: 2 Types 1. Conidiospores or conidia: 2 types Microconidia Conidiophore: supporting structure Holds conidia Examples: Penicillium sp. -
Protista and Fungi - 2 Kingdoms of Eukarya Protists Protists Were First Eukaryotes to Evolve
Protista and Fungi - 2 kingdoms of Eukarya Protists Protists were first eukaryotes to evolve. All eukaryotes lacking distinct characters of 3 higher kingdoms are placed in kingdom Protista Most protists are unicellular others are simple multicellular without evolving higher organs or organ-systems. Mitosis, Meiosis and sexual reproduction arose for the first time in this kingdom. All the organelles of plants, fungi and animals arose in this kingdom. Body Forms in protisita Unicellular: formed of 1 cell – Chlamydomonas, Euglena, Vorticella Colonial: many unicellular organisms live together in a colony – Volvox Filamentous – Cells are placed end to end to form a row = filament - Spirogyra Body Coverings in Protista Plasma membrane = cell membrane – Amoeba Pellicle: protein strips present below cell membrane and supported by microtubules, strips may slide to form flexible covering (Euglena) Alveolate: alveoli are flattened sacs just below cell membrane – Ciliates-Paramecium, dinoflagellates, sporozoans-malarial parasite. Cell wall outside cell membrane in green, brown and red algae Main Groups of Protists Refer to table given separately Fungi These are multicellular, heterotrophic-absorptive eukaryotes. The fungus body is called Mycelium, formed of many thread like Hyphae (singular is hypha). Hypha can be septate with one nucleus per cell or aseptate = coenocytic with many nuclei. Chytridiomycota Chytridiomycota are oldest fungi; only group to possess flagellated spores, zoospores. They have both cellulose and chitin in their cell walls. These are predominantly aquatic. Example is Allomyces. Zygomycota Zygospore Fungi-Zygomycota are molds with non-septate hyphae. These reproduce asexually by spores. The gametes formed at the tips of special hyphae, fuse to form zygospore, a thick walled zygote. -
All About Mold What Is Mold?
Michigan Department of Community Health All About Mold What is mold? Mold is a living thing. It has tiny seeds, called spores, that are always in the air, indoors and outside. The spores are so small, you can’t see them without a microscope. Most of the time, the spores land on something dry and nothing happens. They get sucked up in your vacuum or wiped away when you dust. But if the spores land on something that is wet, they can begin to grow into mold that you can see. How do I know if I have mold growing in my house? You cannot see mold spores because they are too small, but once the mold starts to grow, you will notice it. Mold can grow on almost anything, as long as there is a little bit of water for a couple of days. The growing mold can be different colors: white, gray, brown, black, yellow, orange or green. It can be fluffy, hairy, smooth or flat and cracked, like leather. Mold growing on a wall. Even if you can’t see the mold, you will be able to smell it. Mold can smell very musty, like old books or wet dirt. Should I hire someone to test for mold in my home? Having someone test your house for mold costs a lot of money and is not really useful. You can probably find the mold just using your eyes and your nose. Look in places that you know are often wet or damp, like bathrooms or the kitchen; or that have been wet because of leaks, floods or broken pipes.