G C A T T A C G G C A T genes Article Spatiotemporal Differentiation of Alpine Butterfly Parnassius glacialis (Papilionidae: Parnassiinae) in China: Evidence from Mitochondrial DNA and Nuclear Single Nucleotide Polymorphisms Ruisong Tao 1,2 , Chang Xu 1, Yunliang Wang 1, Xiaoyan Sun 3, Chunxiang Li 3, Junye Ma 3, Jiasheng Hao 1,* and Qun Yang 3,4,* 1 College of Life Sciences, Anhui Normal University, Wuhu 241000, China;
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[email protected] (Y.W.) 2 College of Life Sciences, Hefei Normal University, Hefei 230000, China 3 SKLPS and Center for Excellence in Life and Paleoenvironment, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, China;
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[email protected] (Q.Y.) Received: 17 December 2019; Accepted: 6 February 2020; Published: 11 February 2020 Abstract: The Apollo butterfly, Parnassius glacialis, is one of the most charming members of its genus and includes two subspecies locally distributed in montane areas of south-central China and Japan. In this study, we investigated the genetic structure and demographic history of P. glacialis by analyzing partial sequences of four mitochondrial genes and nuclear single nucleotide polymorphisms (SNPs) via genotyping-by-sequencing (GBS) of samples from nearly the entire known distributional range in China. The mitochondrial DNA (mtDNA) data demonstrated that a total of 39 haplotypes were present, and the species was estimated to have diverged about 0.95 million years ago during the middle Pleistocene transition into two main clades that likely formed during the Kunlun-Huanghe tectonic movement.