Life History of Rhabdontolaimus Psacotheae (Diplogasterida
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Morphological, Molecular and Phylogenetic Study of Filenchus
Alvani et al., J Plant Pathol Microbiol 2015, S:3 Plant Pathology & Microbiology http://dx.doi.org/10.4172/2157-7471.S3-001 Research Article Open Access Morphological, Molecular and Phylogenetic Study of Filenchus aquilonius as a New Species for Iranian Nematofauna and Some Other Known Nematodes from Iran Based on D2D3 Segments of 28 srRNA Gene Somaye Alvani1, Esmat Mahdikhani Moghaddam1*, Hamid Rouhani1 and Abbas Mohammadi2 1Department of Plant Pathology, Ferdowsi University of Mashhad, Mashhad, Iran 2Department of Plant Pathology, University of Birjand, Birjand, Iran Abstract Ziziphus zizyphus is very important crop in Iran. Because there isn’t any research of plant parasitic nematodes on Z. zizyphus, authors were encouraged to work on it. Nematodes isolated from the soil samples by whitehead method (1965) and permanent slides were prepared. Among the species Filenchus aquilonius is redescribed for the first time from Southern Khorasan province.F. aquilonius is characterized by lip region rounded, not offset, with fine annuls; four incisures in lateral line; Stylet moderately developed, 10-11.8 µm long with rounded knobs; Hemizonid immediately in front of excretory pore; Deirids at the level of excretory pore; Spermatheca an axial chamber and offset pouch; Tail about 120-157 µm, tapering gradually to a pointed terminus. For molecular identification the large subunit expansion segments of D2/D3 were performed for F. aquilonius to examine the phylogenetic relationships with other Tylenchids. DNA sequence data revealed that F. aquilonius had closet phylogenetic affinity withIrantylenchus vicinus as a sister group and with other Filenchus species for this region and placed them in one clade with 100% for bootstap value support. -
Life-Stage Specific Transcriptomes of a Migratory Endoparasitic Plant
www.nature.com/scientificreports OPEN Life-stage specifc transcriptomes of a migratory endoparasitic plant nematode, Radopholus similis Received: 20 July 2018 Accepted: 2 April 2019 elucidate a diferent parasitic and Published: xx xx xxxx life strategy of plant parasitic nematodes Xin Huang, Chun-Ling Xu, Si-Hua Yang, Jun-Yi Li, Hong-Le Wang, Zi-Xu Zhang, Chun Chen & Hui Xie Radopholus similis is an important migratory endoparasitic nematode, severely harms banana, citrus and many other commercial crops. Little is known about the molecular mechanism of infection and pathogenesis of R. similis. In this study, 64761 unigenes were generated from eggs, juveniles, females and males of R. similis. 11443 unigenes showed signifcant expression diference among these four life stages. Genes involved in host parasitism, anti-host defense and other biological processes were predicted. There were 86 and 102 putative genes coding for cell wall degrading enzymes and antioxidase respectively. The amount and type of putative parasitic-related genes reported in sedentary endoparasitic plant nematodes are variable from those of migratory parasitic nematodes on plant aerial portion. There were no sequences annotated to efectors in R. similis, involved in feeding site formation of sedentary endoparasites nematodes. This transcriptome data provides a new insight into the parasitic and pathogenic molecular mechanisms of the migratory endoparasitic nematodes. It also provides a broad idea for further research on R. similis. Te burrowing nematode, Radopholus similis [(Cobb, 1893) Torne, 1949] is an important migratory endopar- asitic plant nematode that was frst discovered by Cobb in 1891, on the banana roots from Fiji. Previously, it was reported that R. -
Describing Species
DESCRIBING SPECIES Practical Taxonomic Procedure for Biologists Judith E. Winston COLUMBIA UNIVERSITY PRESS NEW YORK Columbia University Press Publishers Since 1893 New York Chichester, West Sussex Copyright © 1999 Columbia University Press All rights reserved Library of Congress Cataloging-in-Publication Data © Winston, Judith E. Describing species : practical taxonomic procedure for biologists / Judith E. Winston, p. cm. Includes bibliographical references and index. ISBN 0-231-06824-7 (alk. paper)—0-231-06825-5 (pbk.: alk. paper) 1. Biology—Classification. 2. Species. I. Title. QH83.W57 1999 570'.1'2—dc21 99-14019 Casebound editions of Columbia University Press books are printed on permanent and durable acid-free paper. Printed in the United States of America c 10 98765432 p 10 98765432 The Far Side by Gary Larson "I'm one of those species they describe as 'awkward on land." Gary Larson cartoon celebrates species description, an important and still unfinished aspect of taxonomy. THE FAR SIDE © 1988 FARWORKS, INC. Used by permission. All rights reserved. Universal Press Syndicate DESCRIBING SPECIES For my daughter, Eliza, who has grown up (andput up) with this book Contents List of Illustrations xiii List of Tables xvii Preface xix Part One: Introduction 1 CHAPTER 1. INTRODUCTION 3 Describing the Living World 3 Why Is Species Description Necessary? 4 How New Species Are Described 8 Scope and Organization of This Book 12 The Pleasures of Systematics 14 Sources CHAPTER 2. BIOLOGICAL NOMENCLATURE 19 Humans as Taxonomists 19 Biological Nomenclature 21 Folk Taxonomy 23 Binomial Nomenclature 25 Development of Codes of Nomenclature 26 The Current Codes of Nomenclature 50 Future of the Codes 36 Sources 39 Part Two: Recognizing Species 41 CHAPTER 3. -
Characterization and Functional Importance of Two Glycoside Hydrolase Family 16 Genes from the Rice White Tip Nematode Aphelenchoides Besseyi
animals Article Characterization and Functional Importance of Two Glycoside Hydrolase Family 16 Genes from the Rice White Tip Nematode Aphelenchoides besseyi Hui Feng , Dongmei Zhou, Paul Daly , Xiaoyu Wang and Lihui Wei * Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, 210014 Nanjing, China; [email protected] (H.F.); [email protected] (D.Z.); [email protected] (P.D.); [email protected] (X.W.) * Correspondence: [email protected] Simple Summary: The rice white tip nematode Aphelenchoides besseyi is a plant parasite but can also feed on fungi if this alternative nutrient source is available. Glucans are a major nutrient source found in fungi, and β-linked glucans from fungi can be hydrolyzed by β-glucanases from the glycoside hydrolase family 16 (GH16). The GH16 family is abundant in A. besseyi, but their functions have not been well studied, prompting the analysis of two GH16 members (AbGH16-1 and AbGH16-2). AbGH16-1 and AbGH16-2 are most similar to GH16s from fungi and probably originated from fungi via a horizontal gene transfer event. These two genes are important for feeding on fungi: transcript levels increased when cultured with the fungus Botrytis cinerea, and the purified AbGH16-1 and AbGH16-2 proteins inhibited the growth of B. cinerea. When AbGH16-1 and AbGH16-2 expression A. besseyi was silenced, the reproduction ability of was reduced. These findings have proved for the first time that GH16s contribute to the feeding and reproduction of A. besseyi, which thus provides Citation: Feng, H.; Zhou, D.; Daly, P.; novel insights into how plant-parasitic nematodes can obtain nutrition from sources other than their Wang, X.; Wei, L. -
Taxonomy and Identification of Principal Foliar Nematode Species (Aphelenchoides and Litylenchus)
plants Review Taxonomy and Identification of Principal Foliar Nematode Species (Aphelenchoides and Litylenchus) Zafar Handoo *, Mihail Kantor and Lynn Carta Mycology and Nematology Genetic Diversity and Biology Laboratory, USDA, ARS, Northeast Area, Beltsville, MD 20705, USA; [email protected] (M.K.); [email protected] (L.C.) * Correspondence: [email protected] Received: 25 September 2020; Accepted: 2 November 2020; Published: 4 November 2020 Abstract: Nematodes are Earth’s most numerous multicellular animals and include species that feed on bacteria, fungi, plants, insects, and animals. Foliar nematodes are mostly pathogens of ornamental crops in greenhouses, nurseries, forest trees, and field crops. Nematode identification has traditionally relied on morphological and anatomical characters using light microscopy and, in some cases, scanning electron microscopy (SEM). This review focuses on morphometrical and brief molecular details and key characteristics of some of the most widely distributed and economically important foliar nematodes that can aid in their identification. Aphelenchoides genus includes some of the most widely distributed nematodes that can cause crop damages and losses to agricultural, horticultural, and forestry crops. Morphological details of the most common species of Aphelenchoides (A. besseyi, A. bicaudatus, A. fragariae, A. ritzemabosi) are given with brief molecular details, including distribution, identification, conclusion, and future directions, as well as an updated list of the nominal species with its synonyms. Litylenchus is a relatively new genus described in 2011 and includes two species and one subspecies. Species included in the Litylenchus are important emerging foliar pathogens parasitizing trees and bushes, especially beech trees in the United States of America. Brief morphological details of all Litylenchus species are provided. -
JOURNAL of NEMATOLOGY First Record of Aphelenchoides
JOURNAL OF NEMATOLOGY Article | DOI: 10.21307/jofnem-2019-070 e2019-70 | Vol. 51 First record of Aphelenchoides stammeri (Nematoda: Aphelenchoididae) from Turkey Mehmet Dayi,1* Ece B. Kasapoğlu Uludamar,2 Süleyman Akbulut3 and Abstract 2 İ. Halil Elekcioğlu In previous surveys for the investigation of Bursaphelenchus 1Forestry Vocational School, xylophilus in Turkey, several Bursaphelenchus species, except Düzce University, Düzce, Turkey. B. xylophilus, were detected. To determine the insect vectors of 2 these previously reported Bursaphelenchus species, trap trees of Department of Plant Protection, each pine species (Pinus brutia and P. nigra) were cut and kept in Faculty of Agriculture, Çukurova the field from April to September in 2011.Aphelenchoides stammeri University, Adana, Turkey. was isolated from wood chip samples of P. nigra from Isparta 3Department of Forest Engineering, (Sütçüler). A. stammeri was first identified by using morphological Faculty of Forestry, İzmir Katip features and allometric criteria of females and males. In addition, Çelebi University, İzmir, Turkey. molecular analysis using sequences of 18S and 28S ribosomal (rRNA) genes of A. stammeri was performed. This is the first report *E-mail: [email protected] of A. stammeri from Turkey. This paper was edited by Eyualem Abebe. Keywords Received for publication April 4, Pinus, Survey, Vector, Aphelenchoides stammeri, Detection, Morphology, 2019. Diagnosis. Pine wilt disease, caused by the pinewood nem- been periodically carried out in different geographical atode, Bursaphelenchus xylophilus (Steiner and regions of Turkey since 2003. Buhrer, 1934; Nickle, 1970) (Nematoda: Parasitaph- In 2011, a new project was started to collect the elenchidae), has been leading to extensive damage possible insect vectors of Bursaphelenchus Fuchs in pine forests of eastern Asia (Webster, 1999). -
Supplemental Description of Paraphelenchus Acontioides
Nematology, 2011, Vol. 13(8), 887-899 Supplemental description of Paraphelenchus acontioides (Tylenchida: Aphelenchidae, Paraphelenchinae), with ribosomal DNA trees and a morphometric compendium of female Paraphelenchus ∗ Lynn K. CARTA 1, , Andrea M. SKANTAR 1, Zafar A. HANDOO 1 and Melissa A. BAYNES 2 1 United States Department of Agriculture, ARS-BARC, Nematology Laboratory, Beltsville, MD 20705, USA 2 Department of Forest Ecology and Biogeosciences, University of Idaho, Moscow, ID 83844, USA Received: 30 September 2010; revised: 7 February 2011 Accepted for publication: 7 February 2011; available online: 5 April 2011 Summary – Nematodes were isolated from surface-sterilised stems of cheatgrass, Bromus tectorum (Poaceae), in Colorado, grown on Fusarium (Hypocreaceae) fungus culture, and identified as Paraphelenchus acontioides. Morphometrics and micrographic morphology of this species are given to supplement the original description and expand the comparative species diagnosis. A tabular morphometric compendium of the females of the 23 species of Paraphelenchus is provided as the last diagnostic compilation was in 1984. Variations in the oviduct within the genus are reviewed to evaluate the taxonomic assignment of P. d e cke r i , a morphologically transitional species between Aphelenchus and Paraphelenchus. Sequences were generated for both 18S and 28S ribosomal DNA, representing the first identified species within Paraphelenchus so characterised. These sequences were incorporated into phylogenetic trees with related species of Aphelenchidae and Tylenchidae. Aphelenchus avenae isolates formed a well supported monophyletic sister group to Paraphelenchus. The ecology of Paraphelenchus, cheat grass and Fusarium is also discussed. Keywords – fungivorous nematode, invasive species, key, morphology, molecular, phylogeny, taxonomy. Nematodes of the genus Paraphelenchus Micoletzky, P. -
Bursaphelenchus Xylophilus
ISPM 27 27 ANNEX 10 ENG DP 10: Bursaphelenchus xylophilus INTERNATIONAL STANDARD FOR PHYTOSANITARY MEASURES PHYTOSANITARY FOR STANDARD INTERNATIONAL DIAGNOSTIC PROTOCOLS Produced by the Secretariat of the International Plant Protection Convention (IPPC) This page is intentionally left blank This diagnostic protocol was adopted by the Standards Committee on behalf of the Commission on Phytosanitary Measures in January 2016. The annex is a prescriptive part of ISPM 27. ISPM 27 Diagnostic protocols for regulated pests DP 10: Bursaphelenchus xylophilus Adopted 2016; published 2016 CONTENTS 1. Pest Information ............................................................................................................................... 2 2. Taxonomic Information .................................................................................................................... 3 3. Detection ........................................................................................................................................... 3 3.1 Detection in trees ............................................................................................................... 4 3.2 Detection by the use of insect traps, trap logs and in samples from sawmills and timber yards ....................................................................................................................... 4 3.3 Direct detection in wood, wood products and solid wood packaging ............................... 5 3.4 Extraction of nematodes from wood samples .................................................................. -
Transcriptome Analysis of the Chrysanthemum Foliar Nematode, Aphelenchoides Ritzemabosi (Aphelenchida: Aphelenchoididae)
RESEARCH ARTICLE Transcriptome Analysis of the Chrysanthemum Foliar Nematode, Aphelenchoides ritzemabosi (Aphelenchida: Aphelenchoididae) Yu Xiang☯, Dong-Wei Wang☯, Jun-Yi Li, Hui Xie*, Chun-Ling Xu, Yu Li¤ Laboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China a11111 ☯ These authors contributed equally to this work. ¤ Current Address: Department of Plant Pathology, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China * [email protected] Abstract OPEN ACCESS Citation: Xiang Y, Wang D-W, Li J-Y, Xie H, Xu C- The chrysanthemum foliar nematode (CFN), Aphelenchoides ritzemabosi, is a plant para- L, Li Y (2016) Transcriptome Analysis of the sitic nematode that attacks many plants. In this study, a transcriptomes of mixed-stage pop- Chrysanthemum Foliar Nematode, Aphelenchoides ulation of CFN was sequenced on the Illumina HiSeq 2000 platform. 68.10 million Illumina ritzemabosi (Aphelenchida: Aphelenchoididae). high quality paired end reads were obtained which generated 26,817 transcripts with a PLoS ONE 11(11): e0166877. doi:10.1371/journal. pone.0166877 mean length of 1,032 bp and an N50 of 1,672 bp, of which 16,467 transcripts were anno- tated against six databases. In total, 20,311 coding region sequences (CDS), 495 simple Editor: John Jones, James Hutton Institute, UNITED KINGDOM sequence repeats (SSRs) and 8,353 single-nucleotide polymorphisms (SNPs) were pre- dicted, respectively. The CFN with the most shared sequences was B. xylophilus with Received: May 17, 2016 16,846 (62.82%) common transcripts and 10,543 (39.31%) CFN transcripts matched Accepted: November 4, 2016 sequences of all of four plant parasitic nematodes compared. -
PM 7/4 (3) Bursaphelenchus Xylophilus
Bulletin OEPP/EPPO Bulletin (2013) 43 (1), 105–118 ISSN 0250-8052. DOI: 10.1111/epp.12024 European and Mediterranean Plant Protection Organization PM 7/4 (3) Organisation Europeenne et Mediterran eenne pour la Protection des Plantes Diagnostics Diagnostic PM 7/4 (3) Bursaphelenchus xylophilus Specific scope Specific approval and amendment This standard describes a diagnostic protocol for First approved in 2000-09. Revised on 2009-09. Bursaphelenchus xylophilus1. Second revision approved on 2012-09 (maturation feeding by either sex), or, depending on Introduction Monochamus species, to the trunks or larger branches, Bursaphelenchus xylophilus, the pine wood nematode, is an including wood waste or debris, weakened trees or trees that EPPO A2 pest. The nematode is native to North America recently died, during oviposition by the females. Transmis- [Canada, US, Mexico (unconfirmed)] and is thought to have sion of B. xylophilus to the live trees during feeding by the been carried to Japan at the beginning of the 20th century on adult beetles can result in the development of wilt disease timber exports. In Japan, the nematode has been causing in the tree, but only in susceptible species of Pinus under massive mortality of native pine trees (Pinus densiflora, suitable climatic and edaphic conditions. Nevertheless, P. thunbergii, P. luchuensis), where it is the most damaging transmission of B. xylophilus by maturation feeding may forest pest. It has also spread to China, Korea, Portugal and occur also to Pinus and other tree genera but without result- Taiwan. More recently, it has also killed pines in the USA, but ing in wilt development. -
May Passive Dispersal of Fungal Enemies with Native Substrates In
May passive dispersal of fungal enemies with native substrates in olive nurseries help to control phytonematodes? Mohamed Aït Hamza, Hafssa Tazi, Odile Fossati-Gaschignard, Abdelmajid Moukhli, Hicham Lakhtar, Zahra Ferji, Sebastianos Roussos, Abdelhamid El Mousadik, Hassan Boubaker, Thierry Mateille To cite this version: Mohamed Aït Hamza, Hafssa Tazi, Odile Fossati-Gaschignard, Abdelmajid Moukhli, Hicham Lakhtar, et al.. May passive dispersal of fungal enemies with native substrates in olive nurseries help to control phytonematodes?. Biotechnologie, Agronomie, Société et Environnement / Biotechnology, Agronomy, Society and Environment, Presses Agronomiques de Gembloux, 2020, 24 (1), pp.37-45. 10.25518/1780-4507.18354. hal-03145128 HAL Id: hal-03145128 https://hal.archives-ouvertes.fr/hal-03145128 Submitted on 18 Feb 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License B A S E Biotechnol. Agron. Soc. Environ. 2020 24(1), 37-45 May passive dispersal of fungal enemies with native substrates in olive nurseries help to control phytonematodes? Mohamed Aït Hamza (1,3), Hafssa Tazi (2), Odile Fossati-Gaschignard (3), Abdelmajid Moukhli (4), Hicham Lakhtar (2), Zahra Ferji (5), Sebastianos Roussos (6), Abdelhamid El Mousadik (1), Hassan Boubaker (2), Thierry Mateille (3) (1) Université Ibn Zohr, Faculté des Sciences d’Agadir, Laboratoire LBVRN, BP 8106, 80000 Agadir (Morocco). -
Aphelenchoides Besseyi
Bulletin OEPP/EPPO Bulletin (2017) 47 (3), 384–400 ISSN 0250-8052. DOI: 10.1111/epp.12432 European and Mediterranean Plant Protection Organization Organisation Europe´enne et Me´diterrane´enne pour la Protection des Plantes PM 7/39 (2) Diagnostics Diagnostic PM 7/39 (2) Aphelenchoides besseyi Specific scope Specific approval and amendment This Standard describes a diagnostic protocol for Approved in 2003-09. Revised in 2017-04. This revision was Aphelenchoides besseyi. prepared on the basis of the IPPC Diagnostic Protocol This Standard should be used in conjunction with PM adopted in 2016 on Aphelenchoides besseyi, Aphelenchoides 7/76 Use of EPPO diagnostic protocols. fragariae and Aphelenchoides ritzemabosi (Annex 17 to Terms used are those in the EPPO Pictorial Glossary of ISPM 27; IPPC, 2016). The EPPO Diagnostic Protocol only Morphological Terms in Nematology1. covers A. besseyi. It differs in terms of format but it is con- sistent with the content of the IPPC Standard for morphologi- cal identification for this species. With regard to molecular methods, one real-time PCR test available in the region is included as well as DNA barcoding. 1. Introduction 2. Identity The most important host of Aphelenchoides besseyi is Name: Aphelenchoides besseyi Christie 1942 Oryza sativa (rice) and the consequent symptoms of Synonyms: Aphelenchoides oryzae Yokoo 1948 damage have given rise to its common name, white-tip Asteroaphelenchoides besseyi (Christie 1942) Drozdovsky nematode of rice (Franklin & Siddiqi, 1972). 1967 Aphelenchoides besseyi also infests Fragaria species Taxonomic position: Nematoda: Aphelenchida: Aphe- (strawberries), where it is the causal agent of ‘summer lenchina: Aphelenchoididae: Aphelenchoides dwarf’ or ‘crimp’ disease.