life Article Mitogenomics and Evolutionary History of Rodent Whipworms (Trichuris spp.) Originating from Three Biogeographic Regions Jan Petružela 1,2,*, Alexis Ribas 3 and Joëlle Goüy de Bellocq 1,4 1 Institute of Vertebrate Biology, Czech Academy of Sciences, Kvˇetná 8, 603 65 Brno, Czech Republic;
[email protected] 2 Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotláˇrská 2, 602 00 Brno, Czech Republic 3 Section of Parasitology, Department of Biology, Healthcare and the Environment, Faculty of Pharmacy and Food Sciences, University of Barcelona, 08007 Barcelona, Spain;
[email protected] 4 Department of Zoology and Fisheries, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, 165 21 Prague, Czech Republic * Correspondence:
[email protected] Abstract: Trichuris spp. is a widespread nematode which parasitizes a wide range of mammalian hosts including rodents, the most diverse mammalian order. However, genetic data on rodent whipworms are still scarce, with only one published whole genome (Trichuris muris) despite an increasing demand for whole genome data. We sequenced the whipworm mitogenomes from seven rodent hosts belonging to three biogeographic regions (Palearctic, Afrotropical, and Indomalayan), including three previously described species: Trichuris cossoni, Trichuris arvicolae, and Trichuris mastomysi. We assembled and annotated two complete and five almost complete mitogenomes (lacking only the long non-coding region) and performed comparative genomic and phylogenetic analyses. All the Citation: Petružela, J.; Ribas, A.; mitogenomes are circular, have the same organisation, and consist of 13 protein-coding, 2 rRNA, and de Bellocq, J.G. Mitogenomics and 22 tRNA genes. The phylogenetic analysis supports geographical clustering of whipworm species Evolutionary History of Rodent and indicates that T.