Mitotic Golgi Translocation of Erk1c Is Mediated by a Pi4kiiiβ–14-3-3Γ
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Convergent Evolution in the Mechanisms of ACBD3 Recruitment to Picornavirus Replication Sites
RESEARCH ARTICLE Convergent evolution in the mechanisms of ACBD3 recruitment to picornavirus replication sites 1 2 3 1 Vladimira Horova , Heyrhyoung LyooID , Bartosz Ro życkiID , Dominika Chalupska , 1 1 2¤ Miroslav Smola , Jana Humpolickova , Jeroen R. P. M. StratingID , Frank J. M. van 2 1 1 Kuppeveld *, Evzen Boura *, Martin KlimaID * 1 Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic, 2 Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands, 3 Institute of Physics, Polish a1111111111 Academy of Sciences, Warsaw, Poland a1111111111 a1111111111 ¤ Current address: Viroclinics Biosciences, Rotterdam, The Netherlands a1111111111 * [email protected] (FJMvK); [email protected] (EB); [email protected] (MK) a1111111111 Abstract Enteroviruses, members of the family of picornaviruses, are the most common viral infec- OPEN ACCESS tious agents in humans causing a broad spectrum of diseases ranging from mild respiratory Citation: Horova V, Lyoo H, RoÂżycki B, Chalupska illnesses to life-threatening infections. To efficiently replicate within the host cell, enterovi- D, Smola M, Humpolickova J, et al. (2019) Convergent evolution in the mechanisms of ACBD3 ruses hijack several host factors, such as ACBD3. ACBD3 facilitates replication of various recruitment to picornavirus replication sites. PLoS enterovirus species, however, structural determinants of ACBD3 recruitment to the viral rep- Pathog 15(8): e1007962. https://doi.org/10.1371/ lication sites are poorly understood. Here, we present a structural characterization of the journal.ppat.1007962 interaction between ACBD3 and the non-structural 3A proteins of four representative Editor: George A. Belov, University of Maryland, enteroviruses (poliovirus, enterovirus A71, enterovirus D68, and rhinovirus B14). -
Structural Insights and in Vitro Reconstitution of Membrane
www.nature.com/scientificreports OPEN Structural insights and in vitro reconstitution of membrane targeting and activation of human Received: 18 December 2015 Accepted: 10 March 2016 PI4KB by the ACBD3 protein Published: 24 March 2016 Martin Klima1, Dániel J. Tóth2, Rozalie Hexnerova1, Adriana Baumlova1, Dominika Chalupska1, Jan Tykvart1, Lenka Rezabkova3, Nivedita Sengupta2, Petr Man4,5, Anna Dubankova1, Jana Humpolickova1, Radim Nencka1, Vaclav Veverka1,*, Tamas Balla2,* & Evzen Boura1 Phosphatidylinositol 4-kinase beta (PI4KB) is one of four human PI4K enzymes that generate phosphatidylinositol 4-phosphate (PI4P), a minor but essential regulatory lipid found in all eukaryotic cells. To convert their lipid substrates, PI4Ks must be recruited to the correct membrane compartment. PI4KB is critical for the maintenance of the Golgi and trans Golgi network (TGN) PI4P pools, however, the actual targeting mechanism of PI4KB to the Golgi and TGN membranes is unknown. Here, we present an NMR structure of the complex of PI4KB and its interacting partner, Golgi adaptor protein acyl-coenzyme A binding domain containing protein 3 (ACBD3). We show that ACBD3 is capable of recruiting PI4KB to membranes both in vitro and in vivo, and that membrane recruitment of PI4KB by ACBD3 increases its enzymatic activity and that the ACBD3:PI4KB complex formation is essential for proper function of the Golgi. Phosphatidylinositol 4-kinase beta (PI4KB, also known as PI4K IIIβ ) is a soluble cytosolic protein yet its function is to phosphorylate membrane lipids. It is one of four human PI4K enzymes that phosphorylate phosphatidy- linositol (PI) to generate phosphatidylinositol 4-phosphate (PI4P)1,2. PI4P is an essential lipid found in various membrane compartments including the Golgi and trans-Golgi network (TGN), the plasma membrane and the endocytic compartments. -
Functional Dependency Analysis Identifies Potential Druggable
cancers Article Functional Dependency Analysis Identifies Potential Druggable Targets in Acute Myeloid Leukemia 1, 1, 2 3 Yujia Zhou y , Gregory P. Takacs y , Jatinder K. Lamba , Christopher Vulpe and Christopher R. Cogle 1,* 1 Division of Hematology and Oncology, Department of Medicine, College of Medicine, University of Florida, Gainesville, FL 32610-0278, USA; yzhou1996@ufl.edu (Y.Z.); gtakacs@ufl.edu (G.P.T.) 2 Department of Pharmacotherapy and Translational Research, College of Pharmacy, University of Florida, Gainesville, FL 32610-0278, USA; [email protected]fl.edu 3 Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, Gainesville, FL 32610-0278, USA; cvulpe@ufl.edu * Correspondence: [email protected]fl.edu; Tel.: +1-(352)-273-7493; Fax: +1-(352)-273-5006 Authors contributed equally. y Received: 3 November 2020; Accepted: 7 December 2020; Published: 10 December 2020 Simple Summary: New drugs are needed for treating acute myeloid leukemia (AML). We analyzed data from genome-edited leukemia cells to identify druggable targets. These targets were necessary for AML cell survival and had favorable binding sites for drug development. Two lists of genes are provided for target validation, drug discovery, and drug development. The deKO list contains gene-targets with existing compounds in development. The disKO list contains gene-targets without existing compounds yet and represent novel targets for drug discovery. Abstract: Refractory disease is a major challenge in treating patients with acute myeloid leukemia (AML). Whereas the armamentarium has expanded in the past few years for treating AML, long-term survival outcomes have yet to be proven. To further expand the arsenal for treating AML, we searched for druggable gene targets in AML by analyzing screening data from a lentiviral-based genome-wide pooled CRISPR-Cas9 library and gene knockout (KO) dependency scores in 15 AML cell lines (HEL, MV411, OCIAML2, THP1, NOMO1, EOL1, KASUMI1, NB4, OCIAML3, MOLM13, TF1, U937, F36P, AML193, P31FUJ). -
Renoprotective Effect of Combined Inhibition of Angiotensin-Converting Enzyme and Histone Deacetylase
BASIC RESEARCH www.jasn.org Renoprotective Effect of Combined Inhibition of Angiotensin-Converting Enzyme and Histone Deacetylase † ‡ Yifei Zhong,* Edward Y. Chen, § Ruijie Liu,*¶ Peter Y. Chuang,* Sandeep K. Mallipattu,* ‡ ‡ † | ‡ Christopher M. Tan, § Neil R. Clark, § Yueyi Deng, Paul E. Klotman, Avi Ma’ayan, § and ‡ John Cijiang He* ¶ *Department of Medicine, Mount Sinai School of Medicine, New York, New York; †Department of Nephrology, Longhua Hospital, Shanghai University of Traditional Chinese Medicine, Shanghai, China; ‡Department of Pharmacology and Systems Therapeutics and §Systems Biology Center New York, Mount Sinai School of Medicine, New York, New York; |Baylor College of Medicine, Houston, Texas; and ¶Renal Section, James J. Peters Veterans Affairs Medical Center, New York, New York ABSTRACT The Connectivity Map database contains microarray signatures of gene expression derived from approximately 6000 experiments that examined the effects of approximately 1300 single drugs on several human cancer cell lines. We used these data to prioritize pairs of drugs expected to reverse the changes in gene expression observed in the kidneys of a mouse model of HIV-associated nephropathy (Tg26 mice). We predicted that the combination of an angiotensin-converting enzyme (ACE) inhibitor and a histone deacetylase inhibitor would maximally reverse the disease-associated expression of genes in the kidneys of these mice. Testing the combination of these inhibitors in Tg26 mice revealed an additive renoprotective effect, as suggested by reduction of proteinuria, improvement of renal function, and attenuation of kidney injury. Furthermore, we observed the predicted treatment-associated changes in the expression of selected genes and pathway components. In summary, these data suggest that the combination of an ACE inhibitor and a histone deacetylase inhibitor could have therapeutic potential for various kidney diseases. -
Binding Enteroviral and Kobuviral 3A Protein 22 Protein Is Differentially
Downloaded from ACBD3 Interaction with TBC1 Domain mbio.asm.org 22 Protein Is Differentially Affected by Enteroviral and Kobuviral 3A Protein Binding on April 10, 2013 - Published by Alexander L. Greninger, Giselle M. Knudsen, Miguel Betegon, et al. 2013. ACBD3 Interaction with TBC1 Domain 22 Protein Is Differentially Affected by Enteroviral and Kobuviral 3A Protein Binding. mBio 4(2): . doi:10.1128/mBio.00098-13. mbio.asm.org Updated information and services can be found at: http://mbio.asm.org/content/4/2/e00098-13.full.html SUPPLEMENTAL http://mbio.asm.org/content/4/2/e00098-13.full.html#SUPPLEMENTAL MATERIAL REFERENCES This article cites 28 articles, 10 of which can be accessed free at: http://mbio.asm.org/content/4/2/e00098-13.full.html#ref-list-1 CONTENT ALERTS Receive: RSS Feeds, eTOCs, free email alerts (when new articles cite this article), more>> Information about commercial reprint orders: http://mbio.asm.org/misc/reprints.xhtml Information about Print on Demand and other content delivery options: http://mbio.asm.org/misc/contentdelivery.xhtml To subscribe to another ASM Journal go to: http://journals.asm.org/subscriptions/ Downloaded from RESEARCH ARTICLE ACBD3 Interaction with TBC1 Domain 22 Protein Is Differentially mbio.asm.org Affected by Enteroviral and Kobuviral 3A Protein Binding on April 10, 2013 - Published by Alexander L. Greninger,a,b Giselle M. Knudsen,c Miguel Betegon,a,b Alma L. Burlingame,c Joseph L. DeRisia,b Howard Hughes Medical Institute, San Francisco, California, USAa; Department of Biochemistry and Biophysics, UCSF, San Francisco, California, USAb; Department of Pharmaceutical Chemistry, UCSF, San Francisco, California, USAc ABSTRACT Despite wide sequence divergence, multiple picornaviruses use the Golgi adaptor acyl coenzyme A (acyl-CoA) binding domain protein 3 (ACBD3/GCP60) to recruit phosphatidylinositol 4-kinase class III beta (PI4KIII/PI4KB), a factor required for viral replication. -
Characterization of the Golgi C10orf76-PI4KB Complex, and Its
bioRxiv preprint doi: https://doi.org/10.1101/634592; this version posted May 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 1 Characterization of the Golgi c10orf76-PI4KB complex, and its 2 necessity for Golgi PI4P levels and enterovirus replication 3 4 McPhail, J.A.1, Lyoo, H.R.2*, Pemberton, J.G.3*, Hoffmann, R.M.1, van Elst W.2, 5 Strating J.R.P.M.2, Jenkins, M.L.1, Stariha, J.T.B.1, van Kuppeveld, F.J.M.2#, Balla., T.3#, and 6 Burke, J.E.1# 7 * - These authors contributed equally 8 # - Corresponding authors 9 10 Affiliations 11 1 Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC, 12 Canada 13 2 Department of Infectious Diseases & Immunology, Virology Division, Faculty of 14 Veterinary Medicine, Utrecht University, Utrecht, The Netherlands. 15 3 Section on Molecular Signal Transduction, Eunice Kennedy Shriver National Institute 16 of Child Health and Human Development, National Institutes of Health, Bethesda, MD, 17 USA 18 19 Corresponding authors: 20 Burke, John E. ([email protected]), Tel: 1-250-721-8732 21 Balla, Tamas ([email protected]), Tel: 301-435-5637 22 van Kuppeveld, Frank J.M. ([email protected]), Tel: 31-30-253-4173 23 24 Running title 25 Role of c10orf76-PI4KB at the Golgi 26 27 28 29 30 31 32 bioRxiv preprint doi: https://doi.org/10.1101/634592; this version posted May 10, 2019. -
Polyclonal Antibody to PRKD1 Ptyr463 - Aff - Purified
OriGene Technologies, Inc. OriGene Technologies GmbH 9620 Medical Center Drive, Ste 200 Schillerstr. 5 Rockville, MD 20850 32052 Herford UNITED STATES GERMANY Phone: +1-888-267-4436 Phone: +49-5221-34606-0 Fax: +1-301-340-8606 Fax: +49-5221-34606-11 [email protected] [email protected] AP55913PU-S Polyclonal Antibody to PRKD1 pTyr463 - Aff - Purified Alternate names: PKC D1, PKC mu, PKD, PKD1, PRKCM, Protein kinase C mu type, Protein kinase D, Serine/threonine-protein kinase D1, nPKC-D1, nPKC-mu Quantity: 50 µg Concentration: 1.0 mg/ml Background: Serine/threonine-protein kinase that converts transient diacylglycerol (DAG) signals into prolonged physiological effects downstream of PKC, and is involved in the regulation of MAPK8/JNK1 and Ras signaling, Golgi membrane integrity and trafficking, cell survival through NF-kappa-B activation, cell migration, cell differentiation by mediating HDAC7 nuclear export, cell proliferation via MAPK1/3 (ERK1/2) signaling, and plays a role in cardiac hypertrophy, VEGFA-induced angiogenesis, genotoxic-induced apoptosis and flagellin-stimulated inflammatory response. Phosphorylates the epidermal growth factor receptor (EGFR) on dual threonine residues, which leads to the suppression of epidermal growth factor (EGF)-induced MAPK8/JNK1 activation and subsequent JUN phosphorylation. Phosphorylates RIN1, inducing RIN1 binding to 14-3-3 proteins YWHAB, YWHAE and YWHAZ and increased competition with RAF1 for binding to GTP-bound form of Ras proteins (NRAS, HRAS and KRAS). Acts downstream of the heterotrimeric G-protein beta/gamma-subunit complex to maintain the structural integrity of the Golgi membranes, and is required for protein transport along the secretory pathway. -
Structures of Pi4kiiiβ Complexes Show Simultaneous Recruitment of Rab11 and Its Effectors John E
RESEARCH | REPORTS 13. C. Leduc, F. Ruhnow, J. Howard, S. Diez, Proc. Natl. Acad. STRUCTURAL BIOLOGY Sci. U.S.A. 104, 10847–10852 (2007). 14. K. J. Verhey, N. Kaul, V. Soppina, Annu. Rev. Biophys. 40, 267–288 (2011). Structures of PI4KIIIβ complexes 15. H. Kim, T. Ha, Rep. Prog. Phys. 76, 016601 (2013). 16. B. Huang, H. Babcock, X. Zhuang, Cell 143,1047–1058 (2010). show simultaneous recruitment of 17. N. Fakhri, D. A. Tsyboulski, L. Cognet, R. B. Weisman, M. Pasquali, Proc. Natl. Acad. Sci. U.S.A. 106,14219–14223 (2009). 18. S. M. Bachilo et al., Science 298, 2361–2366 (2002). Rab11 and its effectors 19. D. A. Tsyboulski, S. M. Bachilo, R. B. Weisman, Nano Lett. 5, 975–979 (2005). – 20. R. B. Weisman, Anal. Bioanal. Chem. 396,10151023 (2010). 1 1 1 1 1 21. N. Fakhri, F. C. MacKintosh, B. Lounis, L. Cognet, M. Pasquali, John E. Burke, *† Alison J. Inglis, Olga Perisic, Glenn R. Masson, Stephen H. McLaughlin, Science 330, 1804–1807 (2010). Florentine Rutaganira,2 Kevan M. Shokat,2 Roger L. Williams1* 22. S. Berciaud, L. Cognet, B. Lounis, Phys. Rev. Lett. 101, 077402 (2008). 23. N. Hirokawa, Y. Noda, Y. Tanaka, S. Niwa, Nat. Rev. Mol. Cell Biol. Phosphatidylinositol 4-kinases (PI4Ks) and small guanosine triphosphatases (GTPases) 10, 682–696 (2009). are essential for processes that require expansion and remodeling of phosphatidylinositol 24. G. V. Los et al., ACS Chem. Biol. 3, 373–382 (2008). 4-phosphate (PI4P)–containing membranes, including cytokinesis, intracellular 25. C. P. Brangwynne, G. H. Koenderink, F. -
The Phosphorylation Status of PIP5K1C at Serine 448 Can Be Predictive for Invasive Ductal Carcinoma of the Breast
www.oncotarget.com Oncotarget, 2018, Vol. 9, (No. 91), pp: 36358-36370 Research Paper The phosphorylation status of PIP5K1C at serine 448 can be predictive for invasive ductal carcinoma of the breast Nisha Durand1, Sahra Borges1, Tavia Hall1, Ligia Bastea1, Heike Döppler1, Brandy H. Edenfield1, E. Aubrey Thompson1, Xochiquetzal Geiger2 and Peter Storz1 1Department of Cancer Biology, Mayo Clinic Comprehensive Cancer Center, Mayo Clinic, Jacksonville, FL 32224, USA 2Laboratory Medicine and Pathology, Mayo Clinic, Jacksonville, FL 32224, USA Correspondence to: Peter Storz, email: [email protected] Keywords: PIP5K1C; breast cancer; invasive phenotype; phosphorylation Received: June 09, 2018 Accepted: October 31, 2018 Published: November 20, 2018 Copyright: Durand et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ABSTRACT Phosphatidylinositol-4-phosphate 5-kinase type-1C (PIP5K1C) is a lipid kinase that regulates focal adhesion dynamics and cell attachment through site-specific formation of phosphatidylinositol-4,5-bisphosphate (PI4,5P2). By comparing normal breast tissue to carcinoma in situ and invasive ductal carcinoma subtypes, we here show that the phosphorylation status of PIP5K1C at serine residue 448 (S448) can be predictive for breast cancer progression to an aggressive phenotype, while PIP5K1C expression levels are not indicative for this event. PIP5K1C phosphorylation at S448 is downregulated in invasive ductal carcinoma, and similarly, the expression levels of PKD1, the kinase that phosphorylates PIP5K1C at this site, are decreased. Overall, since PKD1 is a negative regulator of cell migration and invasion in breast cancer, the phosphorylation status of this residue may serve as an indicator of aggressiveness of breast tumors. -
Page 1 Exploring the Understudied Human Kinome For
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.02.022277; this version posted June 30, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Exploring the understudied human kinome for research and therapeutic opportunities Nienke Moret1,2,*, Changchang Liu1,2,*, Benjamin M. Gyori2, John A. Bachman,2, Albert Steppi2, Rahil Taujale3, Liang-Chin Huang3, Clemens Hug2, Matt Berginski1,4,5, Shawn Gomez1,4,5, Natarajan Kannan,1,3 and Peter K. Sorger1,2,† *These authors contributed equally † Corresponding author 1The NIH Understudied Kinome Consortium 2Laboratory of Systems Pharmacology, Department of Systems Biology, Harvard Program in Therapeutic Science, Harvard Medical School, Boston, Massachusetts 02115, USA 3 Institute of Bioinformatics, University of Georgia, Athens, GA, 30602 USA 4 Department of Pharmacology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA 5 Joint Department of Biomedical Engineering at the University of North Carolina at Chapel Hill and North Carolina State University, Chapel Hill, NC 27599, USA Key Words: kinase, human kinome, kinase inhibitors, drug discovery, cancer, cheminformatics, † Peter Sorger Warren Alpert 432 200 Longwood Avenue Harvard Medical School, Boston MA 02115 [email protected] cc: [email protected] 617-432-6901 ORCID Numbers Peter K. Sorger 0000-0002-3364-1838 Nienke Moret 0000-0001-6038-6863 Changchang Liu 0000-0003-4594-4577 Ben Gyori 0000-0001-9439-5346 John Bachman 0000-0001-6095-2466 Albert Steppi 0000-0001-5871-6245 Page 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.04.02.022277; this version posted June 30, 2020. -
Activation of Rab11a and Endocytosis by Phosphatidylinositol 4-Kinase III Beta Promotes
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.10.942177; this version posted February 11, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Activation of Rab11a and endocytosis by Phosphatidylinositol 4-kinase III beta promotes oncogenic signaling in breast cancer Running Title: PI4KIIIβ regulates oncogenesis through endocytosis Authors: Spencer A MacDonald1, Katherine Harding1, Patricia Bilodeau, Christiano T de Souza2, Carlo Cosimo Campa3, Emilio Hirsch4, Rebecca C Auer2,5, Jonathan M Lee1 Affiliations: 1Department of Biochemistry, Microbiology, and Immunology, University of Ottawa, Ottawa, Ontario, Canada 2Centre for Innovative Cancer Research, Ottawa Hospital Research Institute, Ottawa, Ontario, Canada,3Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, 4Department of Biotechnology and Health Sciences, Molecular Biotechnology Center, University of Turin, Turin, Italy, 5Department of Surgery, University of Ottawa, Ottawa, Ontario, Canada Corresponding Author: Jonathan M Lee. Department of Biochemistry, Microbiology, and Immunology, University of Ottawa, 451 Smyth Road, Ottawa, ON K1H 8M5, Canada, Phone: 613-562-5800, ext. 8640; Fax: 613-562-5452; E-mail: [email protected] Funding: This work was supported by operating funds from the Canadian Cancer Society Research Institute (JML & RA). bioRxiv preprint doi: https://doi.org/10.1101/2020.02.10.942177; this version posted February 11, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
ACBD3, Its Cellular Interactors, and Its Role in Breast Cancer Jack Houghton-Gisby and Amanda J
Cancer Studies and Therapeutics Research Open Volume 5 Issue 2 Review Article ACBD3, Its Cellular Interactors, and Its Role in Breast Cancer Jack Houghton-Gisby and Amanda J. Harvey* Department of Life Sciences, Centre for Genomic Engineering and Maintenance, Brunel University London, Kingston Lane, Uxbridge, Middlesex, UB8 3PH, UK *Corresponding author: Amanda J. Harvey, Department of Life Sciences, Centre for Genomic Engineering and Maintenance, Brunel University London, Kingston Lane, Uxbridge, Middlesex, UB8 3PH, UK, Tel: +44 (0) 1895 267264; E-mail: [email protected] Received: May 29, 2020; Accepted: June 12, 2020; Published: June 18, 2020 Abstract ACBD3 breast cancer research to date reveals that overexpression at mRNA and protein level is near universal in breast tumour tissue and that high ACBD3 expression is associated with worse patient prognosis. ACBD3 has been shown to have an important role in specifying cell fate and maintaining stem cell pools in neurological development and deletion of ACBD3 in human cell lines prevents cell division. Combined with observations that β-catenin expression and activity is increased when ACBD3 is overexpressed it has been hypothesised that ACBD3 promotes breast cancer by increasing Wnt signalling. This may only be one aspect of ACBD3’s effects as its expression and localisation regulates steroidogenesis, calcium mediated redox stress and inflammation, glucose import and PI(4)P production which are all intrinsically linked to breast cancer dynamics. Given the wide scope for a role of ACBD3 in breast cancer, we explore its interactors and the implications of preventing these interactions. Keywords: ACBD3, Breast cancer, Chromosome 1, Golgi, NUMB, PI4Kβ, Phosphatidylinositol, Protein kinase A, Steroidogenesis, Wnt signalling, 1q Introduction a proline rich region (Figure 1) [8].