An Introduction to the New Guinea Database, with Notes on the Zingiberaceae, Specifically Riedelia Oliv
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The Molecular Phylogeny of Alpinia (Zingiberaceae): a Complex and Polyphyletic Genus of Gingers1
American Journal of Botany 92(1): 167±178. 2005. THE MOLECULAR PHYLOGENY OF ALPINIA (ZINGIBERACEAE): A COMPLEX AND POLYPHYLETIC GENUS OF GINGERS1 W. J OHN KRESS,2,3,5 AI-ZHONG LIU,2 MARK NEWMAN,4 AND QING-JUN LI3 2Department of Botany, MRC-166, United States National Herbarium, National Museum of Natural History, Smithsonian Institution, PO Box 37012, Washington, D.C. 20013-7012 USA; 3Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303 China; and 4Royal Botanic Garden, 20A Inverleith Row, Edinburgh EH3 5LR, Scotland, UK Alpinia is the largest, most widespread, and most taxonomically complex genus in the Zingiberaceae with 230 species occurring throughout tropical and subtropical Asia. Species of Alpinia often predominate in the understory of forests, while others are important ornamentals and medicinals. Investigations of the evolutionary relationships of a subset of species of Alpinia using DNA sequence- based methods speci®cally test the monophyly of the genus and the validity of the previous classi®cations. Seventy-two species of Alpinia, 27 non-Alpinia species in the subfamily Alpinioideae, eight species in the subfamily Zingiberoideae, one species in the subfamily Tamijioideae, and three species in the outgroup genus Siphonochilus (Siphonochiloideae) were sequenced for the plastid matK region and the nuclear internal transcribed spacer (ITS) loci. Parsimony analyses of both individual and combined data sets identi®ed six polyphyletic clades containing species of Alpinia distributed across the tribe Alpinieae. These results were supported by a Bayesian analysis of the combined data set. Except in a few speci®c cases, these monophyletic groupings of species do not correspond with either Schumann's (1904) or Smith's (1990) classi®cation of the genus. -
Leptosolena(Zingiberaceae)
The JapaneseSocietyJapanese Society for Plant Systematics ISSN 1346-7565 Acta Phytetax. Geobet. S6 (]): 41-53 (200S) Return from the Lost: Rediscovery of the Presumed Extinct Leptosolena (Zingiberaceae) in the Philippines and its Phylogenetic Placement in Gingers HIDENOBU FUNAKOSHI]*, W. JOHN KRESS2, JANA gKORNIeKOVA3, AIZHONG LIU2 and KEN INOUE`' iDepartment qf'Environmental System Science, Graduate School ofScience and TlechnologM Shinshu U}iiversiijl 3- 2Dapartment 1-l Asahi, Matsumoto 390-862J Japan; ofBotany MRC-166, Uhited States Ndtional Herbarium, Museum Historpl IVational ofNZitural Smithsonian lnstitution, R O. Box 37012, Ukeshington, D,C 20013-7012 3Department 4Biolegicat USA; ofBotan>L Charles University, Bendtskd 2, J28 Ol, Prague, Czech Rqp"hlic; Institute and Herbarium, fuculty ofScience, Shinsht{ Universic)l 3-1-1 Asahi, Matsumoto 390-8621 Jopan The genus Leptosolena currently accepted as monotypic and endemic to the Philippines, has been con- sidered as an imperfectly known genus due to the description based on insucacient herbarium materi- als fOr describing fioral characters and no recent collection. Our rediscovery of L, haenkei has made it possible not only to describe the species in more depth from fresh materials and to compare with the uncertain second species, L. insignis, more precisely, but to clarify the phylogenetic position ameng Zingiberaceae with molecular data. Our results support the former treatment that L haenkei and L insig- nis are conspecific, resulting in L. insignis as a later synonym. The ]ectotype of L. haenkei is chosen among Haenke's historical colLections deposited at PR and PRC. Results from DNA sequence data of the ITS and tnatK loci demonstrate that Lqptosolena forms a clade with LEiizoverberghia and Aipinia species from the Philippines and Oceania. -
The Molecular Phylogeny of Alpinia (Zingiberaceae): a Complex and Polyphyletic Genus of Gingers1
http://www.paper.edu.cn American Journal of Botany 92(1): 167±178. 2005. THE MOLECULAR PHYLOGENY OF ALPINIA (ZINGIBERACEAE): A COMPLEX AND POLYPHYLETIC GENUS OF GINGERS1 W. J OHN KRESS,2,3,5 AI-ZHONG LIU,2 MARK NEWMAN,4 AND QING-JUN LI3 2Department of Botany, MRC-166, United States National Herbarium, National Museum of Natural History, Smithsonian Institution, PO Box 37012, Washington, D.C. 20013-7012 USA; 3Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303 China; and 4Royal Botanic Garden, 20A Inverleith Row, Edinburgh EH3 5LR, Scotland, UK Alpinia is the largest, most widespread, and most taxonomically complex genus in the Zingiberaceae with 230 species occurring throughout tropical and subtropical Asia. Species of Alpinia often predominate in the understory of forests, while others are important ornamentals and medicinals. Investigations of the evolutionary relationships of a subset of species of Alpinia using DNA sequence- based methods speci®cally test the monophyly of the genus and the validity of the previous classi®cations. Seventy-two species of Alpinia, 27 non-Alpinia species in the subfamily Alpinioideae, eight species in the subfamily Zingiberoideae, one species in the subfamily Tamijioideae, and three species in the outgroup genus Siphonochilus (Siphonochiloideae) were sequenced for the plastid matK region and the nuclear internal transcribed spacer (ITS) loci. Parsimony analyses of both individual and combined data sets identi®ed six polyphyletic clades containing species of Alpinia distributed across the tribe Alpinieae. These results were supported by a Bayesian analysis of the combined data set. Except in a few speci®c cases, these monophyletic groupings of species do not correspond with either Schumann's (1904) or Smith's (1990) classi®cation of the genus. -
Cape York, Queensland
Biodiversity Summary for NRM Regions Guide to Users Background What is the summary for and where does it come from? This summary has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. It highlights important elements of the biodiversity of the region in two ways: • Listing species which may be significant for management because they are found only in the region, mainly in the region, or they have a conservation status such as endangered or vulnerable. • Comparing the region to other parts of Australia in terms of the composition and distribution of its species, to suggest components of its biodiversity which may be nationally significant. The summary was produced using the Australian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. The list of families covered in ANHAT is shown in Appendix 1. Groups notnot yet yet covered covered in inANHAT ANHAT are are not not included included in the in the summary. • The data used for this summary come from authoritative sources, but they are not perfect. -
Checklist of the Zingiberaceae of Malesia
Checklist of the Zingiberaceae of Malesia Mark Newman Amélie Lhuillier Axel Dalberg Poulsen BLUMEA Supplement 16 NATIONAAL HERBARIUM NEDERLAND, Universiteit Leiden branch 2004 ISSN 0006-5196 ISBN 90-71236-XX-X BLUMEA Supplement 16 © 2004 Nationaal Herbarium Nederland, Universiteit Leiden branch No part of this publication, apart from bibliographic data and brief quotations in critical reviews, may be reproduced, re-recorded or published in any form, including print, photocopy, microform, electronic or electromagnetic record without written permission. CHECKLIST OF THE ZINGIBERACEAE OF MALESIA MARK NEWMAN1, AMÉLIE LHUILLIER2 & AXEL DALBERG POULSEN3 SUMMARY A checklist of Malesian Zingiberaceae is provided, giving generic names, specific and infraspecific binomials and trinomials, basionyms, synonyms, protologues, type specimens and their locations and limited information on distributions. The revision status of accepted genera and some nomenclatural notes are included. In total 1,661 names are listed. INTRODUCTION This checklist is a precursor to a revision of the Zingiberaceae for Flora Malesiana (FM). It appears very nearly a century after the last monograph of the family (Schu- mann, 1904). During this time generic limits in the family have changed greatly and many new species have been described, while the forests in Malesia have declined catastrophically. There have been revisions of the Zingiberaceae for certain areas within Malesia, notably Holttumʼs Zingiberaceae of the Malay Peninsula (Holttum, 1950) and Smithʼs Review of Bornean Zingiberaceae (Smith, 1985, 1986, 1987, 1988, 1989). However, for large areas of Malesia, including Sumatra, the Philippines and all of eastern Malesia, there is still only a scattering of old papers in a number of European languages. -
Plant Biodiversity Science, Discovery, and Conservation: Case Studies from Australasia and the Pacific
Plant Biodiversity Science, Discovery, and Conservation: Case Studies from Australasia and the Pacific Craig Costion School of Earth and Environmental Sciences Department of Ecology and Evolutionary Biology University of Adelaide Adelaide, SA 5005 Thesis by publication submitted for the degree of Doctor of Philosophy in Ecology and Evolutionary Biology July 2011 ABSTRACT This thesis advances plant biodiversity knowledge in three separate bioregions, Micronesia, the Queensland Wet Tropics, and South Australia. A systematic treatment of the endemic flora of Micronesia is presented for the first time thus advancing alpha taxonomy for the Micronesia-Polynesia biodiversity hotspot region. The recognized species boundaries are used in combination with all known botanical collections as a basis for assessing the degree of threat for the endemic plants of the Palau archipelago located at the western most edge of Micronesia’s Caroline Islands. A preliminary assessment is conducted utilizing the IUCN red list Criteria followed by a new proposed alternative methodology that enables a degree of threat to be established utilizing existing data. Historical records and archaeological evidence are reviewed to establish the minimum extent of deforestation on the islands of Palau since the arrival of humans. This enabled a quantification of population declines of the majority of plants endemic to the archipelago. In the state of South Australia, the importance of establishing concepts of endemism is emphasized even further. A thorough scientific assessment is presented on the state’s proposed biological corridor reserve network. The report highlights the exclusion from the reserve system of one of the state’s most important hotspots of plant endemism that is highly threatened from habitat fragmentation and promotes the use of biodiversity indices to guide conservation priorities in setting up reserve networks. -
The Phylogeny and a New Classification of the Gingers (Zingiberaceae): Evidence from Molecular Data1
American Journal of Botany 89(11): 1682±1696. 2002. THE PHYLOGENY AND A NEW CLASSIFICATION OF THE GINGERS (ZINGIBERACEAE): EVIDENCE FROM MOLECULAR DATA1 W. J OHN KRESS,2,5 LINDA M. PRINCE,2,4 AND KYLE J. WILLIAMS3 2Botany, MRC-166, United States National Herbarium, National Museum of Natural History, Smithsonian Institution, P.O. Box 37012, Washington, D.C. 20013-7012 USA; 3Department of Biology, Duke University, Durham, North Carolina 27708 USA The pantropical Zingiberaceae is the largest family in the order Zingiberales with 53 genera and over 1200 species. Classi®cations of the family ®rst proposed in 1889 and re®ned by others since that time recognize four tribes (Globbeae, Hedychieae, Alpinieae, and Zingibereae) based on morphological features, such as number of locules and placentation in the ovary, development of staminodia, modi®cations of the fertile anther, and rhizome-shoot-leaf orientation. New phylogenetic analyses based on DNA sequences of the nuclear internal transcribed spacer (ITS) and plastid matK regions suggest that at least some of these morphological traits are homo- plasious and three of the tribes are paraphyletic. The African genus Siphonochilus and Bornean genus Tamijia are basal clades. The former Alpinieae and Hedychieae for the most part are monophyletic taxa with the Globbeae and Zingibereae included within the latter. The results of these phylogenetic investigations are used to propose a new classi®cation of the Zingiberaceae that recognizes four subfamilies and four tribes: Siphonochiloideae (Siphonochileae), Tamijioideae (Tamijieae), Alpinioideae (Alpinieae, Riedelieae), and Zingiberoideae (Zingibereae, Globbeae). Morphological features congruent with this classi®cation and the taxonomic status of various monotypic genera are discussed. -
State of Wet Tropics Report 2013-2014
STATE OF THE WET TROPICS REPORT 2013–2014 State of Wet Tropics Management Authority 2013-2014 Ancient, threatened and endemic plants of the Wet Tropics World Heritage Area Purpose of the report Each year the Wet Tropics Management Authority prepares a report on the administration of the Act during the year, fi nancial statements for the year, and a report on the state of Area. This State of Wet Tropics report satisfi es the requirements of Queensland’s Wet Tropics World Heritage Protection and Management Act 1993 and the Commonwealth’s Wet Tropics of Queensland World Heritage Conservation Act 1994. Public availability This publication can be accessed and downloaded from our website at www.wettropics.gov.au Alternatively, hard copies of this publication can be obtained by emailing [email protected] Interpreter service statement The Wet Tropics Management Authority is committed to providing accessible services to people from all culturally and linguistically diverse backgrounds. If you have diffi culty in understanding this report and need to access this document in a language other than English, please call the Translating and Interpreting Service (TIS National) on 131 450 and ask them to telephone the Queensland Government Library Services on +61 7 3224 8412. © Wet Tropics Management Authority 2014 Licence This report is licensed under a Creative Commons Attribution (CC BY) 3.0 Australia licence. CC BY Licence Summary Statement In essence, you are free to copy, communicate and adapt this annual report, as long as you attribute the work to the Wet Tropics Management Authority. To view a copy of this licence, visit www.creativecommons.org/licenses/by/3.0/au/deed.en Attribution Content from this annual report should be attributed as: Wet Tropics Management Authority (2014) State of Wet Tropics Report 2013/14: Ancient, threatened and endemic plants of the Wet Tropics World Heritage Area. -
BOTANICAL ILLUSTRATION WORKSHOP 1-2 September 2013
CONTENT CONTENT WELCOME MESSAGE ............................................................................................... 1 ORGANIZING COMMITTEE ...................................................................................... 2 GENERAL INFORMATION ....................................................................................... 5 CONFERENCE PROGRAM OVERVIEW ............................................................ 12 KEYNOTE LECTURE ................................................................................................. 16 ORAL PRESENTATION DAY 1: SESSION 1 – 2 ........................................................................................ 19 DAY 2: SESSION 3 – 6 ........................................................................................ 54 DAY 4: SESSION 7 – 9 ........................................................................................ 126 DAY 5: SESSION 10 – 12 .................................................................................... 178 POSTER PRESENTATION ......................................................................................... 217 MISCELLANEOUS ....................................................................................................... 295 LIST OF PARTICIPANTS .......................................................................................... 304 AUTHOR INDEX ........................................................................................................ 329 9th International Flora Malesiana Symposium i WELCOME MESSAGE -
Systematische Wurzelanatomie Der Zingiberales (Monocotyledoneae)
Systematische Wurzelanatomie der Zingiberales (Monocotyledoneae) Dissertation der Fakultät für Biologie der Ludwig-Maximilians-Universität München Eingereicht von Elisabeth Kreiner am 18. April 2007 1. Gutachter: Prof. Dr. Hans-Jürgen Tillich 2. Gutachter: Prof. Dr. Reinhard Agerer Tag der mündlichen Prüfung: 16. Oktober 2007 Danksagung Am Gelingen der vorliegenden Studie haben zahlreiche Personen direkt oder indirekt mitgewirkt. Ohne ihre Hilfe wäre diese Arbeit nie zustande gekommen. Ihnen allen sei herzlich gedankt. Herrn Prof. Dr. Hans-Jürgen Tillich möchte ich meinen Dank ausdrücken für die Überlassung des Themas, die Durchsicht des Manuskripts, die Bereitstellung der technischen Ausrüstung, ferner für die angenehme und umfassende Betreuung und den zugestandenen Freiraum für weitgehend selbständiges Arbeiten. Er war stets mit Interesse und Anregungen an meiner Seite und hat mich hilfsbereit und geduldig begleitet. Herrn Dr. h. c. Joseph Bogner und den Gärtnern des Botanischen Gartens München danke ich für die Hilfe beim Ernten der Wurzeln, die wertvollen Informationen über die Herkunft der Pflanzen, für deren sorgsame Pflege und die Erlaubnis, sie für meine Arbeit verwenden zu dürfen. Frau Mila Vosyka und Herrn Edmund Marksteiner gilt mein Dank für ihre Hilfe bei labortechnischen Fragen. Frau Stephanie Witz möchte ich danken für die Beschaffung von Literatur. Mein Dank gilt auch meinen Kolleginnen und Kollegen Thassilo Franke, Paraskevi Iosifidou, Anton Hofreiter und Christian Köbele die mit interessanten Gesprächen für ein freundschaftliches Arbeitsklima sorgten. Meiner Freundin Stephanie Vetter danke ich für ihre Hilfe beim Scannen der Dias für die Tafeln im Anhang. Schließlich möchte ich meiner Familie danken, insbesondere meinem Mann, Dr. Andreas Kreiner, der mir bei Computerfragen stets hilfreich zur Seite stand und mir in allen Phasen der Arbeit Mut zugesprochen hat, und meiner Mutter, Anna Luise Sill, die es mir ermöglicht hat, meinen Studienwunsch zu erfüllen, und mich nach wie vor in meinen Zielen unterstützt. -
Characterization of CYCLOIDEA-Like Genes in Controlling Floral Zygomorphy in the Monocotyledon Alstroemeria
Title Characterization of CYCLOIDEA-like genes in controlling floral zygomorphy in the monocotyledon Alstroemeria Hoshino, Yoichiro; Igarashi, Toshiya; Ohshima, Masumi; Shinoda, Koichi; Murata, Naho; Kanno, Akira; Nakano, Author(s) Masaru Scientia Horticulturae, 169, 6-13 Citation https://doi.org/10.1016/j.scienta.2014.01.046 Issue Date 2014-04-16 Doc URL http://hdl.handle.net/2115/54751 Type article (author version) Additional Information There are other files related to this item in HUSCAP. Check the above URL. File Information manuscript.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP 1 Title 2 Characterization of CYCLOIDEA-like genes in controlling floral zygomorphy in 3 the monocotyledon Alstroemeria 4 5 Authors 6 Yoichiro Hoshino1,*, Toshiya Igarashi1, Masumi Ohshima1, Koichi Shinoda2, Naho 7 Murata2, Akira Kanno3 and Masaru Nakano4 8 9 Affiliations and addresses 10 1 Field Science Center for Northern Biosphere, Hokkaido University, Kita 11, Nishi 11 10, Kita-Ku, Sapporo 060-0811, Japan 12 2 NARO Hokkaido Agricultural Research Center, Hitsujigaoka 1, Toyohira-ku, 13 Sapporo 062-8555, Japan 14 3 Graduate School of Life Sciences, Tohoku University, Katahira 2-1-1, Aoba-ku, 15 Sendai 980-8577, Japan 16 4 Faculty of Agriculture, Niigata University, 2-8050 Ikarashi, Niigata 950-2181, 17 Japan 18 19 *Corresponding author: Yoichiro Hoshino 20 Field Science Center for Northern Biosphere, Hokkaido University, Kita 11, Nishi 10, 21 Kita-Ku, Sapporo 060-0811, Japan 22 Telephone: +81-11-706-2857 FAX: +81-11-706-2857 23 E-mail: [email protected] 24 - 1 - 1 ABSTRACT 2 The CYCLOIDEA (CYC) gene controls the development of zygomorphic flowers and 3 the determination of adaxial identity of floral organs in the model developmental 4 system of Antirrhinum majus. -
Reinstatement and Revision of the Genus Adelmeria (Zingiberaceae) Endemic to the Philippines Rudolph Valentino A
TAXON 2019 Docot & al. • Reinstatement and revision of Adelmeria SYSTEMATICS AND PHYLOGENY Reinstatement and revision of the genus Adelmeria (Zingiberaceae) endemic to the Philippines Rudolph Valentino A. Docot,1,4 Cecilia I. Banag1,2,3 & Axel Dalberg Poulsen5 1 The Graduate School, Thomas Aquinas Research Center, University of Santo Tomas, España Boulevard, Sampaloc, Manila 1008, Philippines 2 Department of Biological Sciences, College of Science, Thomas Aquinas Research Center, University of Santo Tomas, España Boulevard, Sampaloc, Manila 1008, Philippines 3 Research Center for the Natural and Applied Sciences, Thomas Aquinas Research Center, University of Santo Tomas, España Boulevard, Sampaloc, Manila 1008, Philippines 4 Department of Biological Sciences, Institute of Art and Sciences, Far Eastern University, Nicanor Reyes Sr. Street, Sampaloc, Manila 1015, Philippines 5 Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh EH3 5LR, Scotland, U.K. Address for correspondence: Rudolph Valentino A. Docot, [email protected] DOI https://doi.org/10.1002/tax.12071 Abstract In 1909, Ridley published Adelmeria characterized by its congested terminal inflorescence with large persistent floral bracts. All five species at some point placed in Adelmeria were synonymized in Alpinia by Loesener and subsequent authors. Several phylo- genetic studies revealed that Alpinia is highly polyphyletic, suggesting that it should be split into several genera. In the present study, we sampled all five species initially placed in Adelmeria plus additional ones with a similar morphology. The combined analysis of the ITS and trnK/matK regions showed that these species formed a strongly supported monophyletic group inside the Alpinia eubractea clade of the tribe Alpinieae. Although not completely diagnostic, the following morphological characters separate Adelmeria from most of the species currently inside the Alpinia eubractea clade: bilobed ligules; congested inflorescences; utricular bracteoles; sessile flowers; crestless anthers; obovoid fruits.