Biodiversity Data Journal 5: e12731 doi: 10.3897/BDJ.5.e12731 Research Article NGS-based biodiversity and community structure analysis of meiofaunal eukaryotes in shell sand from Hållö island, Smögen, and soft mud from Gullmarn Fjord, Sweden Quiterie Haenel‡, Oleksandr Holovachov§§, Ulf Jondelius , Per Sundberg|,¶, Sarah J. Bourlat|,¶ ‡ Zoological Institute, University of Basel, Basel, Switzerland § Swedish Museum of Natural History, Stockholm, Sweden | Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden ¶ SeAnalytics AB, Bohus-Björkö, Sweden Corresponding author: Sarah J. Bourlat (
[email protected]) Academic editor: Urmas Kõljalg Received: 15 Mar 2017 | Accepted: 06 Jun 2017 | Published: 08 Jun 2017 Citation: Haenel Q, Holovachov O, Jondelius U, Sundberg P, Bourlat S (2017) NGS-based biodiversity and community structure analysis of meiofaunal eukaryotes in shell sand from Hållö island, Smögen, and soft mud from Gullmarn Fjord, Sweden. Biodiversity Data Journal 5: e12731. https://doi.org/10.3897/BDJ.5.e12731 Abstract Aim: The aim of this study was to assess the biodiversity and community structure of Swedish meiofaunal eukaryotes using metabarcoding. To validate the reliability of the metabarcoding approach, we compare the taxonomic resolution obtained using the mitochondrial cytochrome oxidase 1 (COI) ‘mini-barcode’ and nuclear 18S small ribosomal subunit (18S) V1-V2 region, with traditional morphology-based identification of Xenacoelomorpha and Nematoda. Location: 30 samples were analysed from two ecologically distinct locations along the west coast of Sweden. 18 replicate samples of coarse shell sand were collected along the north- eastern side of Hållö island near Smögen, while 12 replicate samples of soft mud were collected in the Gullmarn Fjord near Lysekil.