Seasonal and Algal Diet-Driven Patterns of the Digestive Microbiota
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A Preliminary Study on the Interfacial Strength of Red Abalone
University of Vermont ScholarWorks @ UVM Graduate College Dissertations and Theses Dissertations and Theses 2016 A Preliminary Study On The nI terfacial Strength Of Red Abalone Saleh Jaman Alghamdi University of Vermont Follow this and additional works at: https://scholarworks.uvm.edu/graddis Part of the Civil Engineering Commons Recommended Citation Alghamdi, Saleh Jaman, "A Preliminary Study On The nI terfacial Strength Of Red Abalone" (2016). Graduate College Dissertations and Theses. 633. https://scholarworks.uvm.edu/graddis/633 This Thesis is brought to you for free and open access by the Dissertations and Theses at ScholarWorks @ UVM. It has been accepted for inclusion in Graduate College Dissertations and Theses by an authorized administrator of ScholarWorks @ UVM. For more information, please contact [email protected]. A PRELIMINARY STUDY ON THE INTERFACIAL STRENGTH OF RED ABALONE A Thesis Presented by Saleh J Alghamdi to The Faculty of the Graduate College of The University of Vermont In Partial Fulfillment of the Requirements for the Degree of Master of Science Specializing in Civil Engineering October, 2016 Defense Date: June 14, 2016 Thesis Examination Committee: Ting Tan, Ph.D, Advisor Jie Yang, Ph.D., Chairperson George Pinder, Ph.D. Cynthia J. Forehand, Ph.D., Dean of the Graduate College Abstract Nacre is a hierarchical material found within the tough shells of red abalone. Despite being composed of calcium carbonate, nacre exhibits remarkable mechanical properties resulting from the nanoscale brick-and-mortar structure made from aragonite polygons. The objective of this research is to elucidate the toughening mechanisms associated with the interfacial resistance of red abalone. -
Os Nomes Galegos Dos Moluscos
A Chave Os nomes galegos dos moluscos 2017 Citación recomendada / Recommended citation: A Chave (2017): Nomes galegos dos moluscos recomendados pola Chave. http://www.achave.gal/wp-content/uploads/achave_osnomesgalegosdos_moluscos.pdf 1 Notas introdutorias O que contén este documento Neste documento fornécense denominacións para as especies de moluscos galegos (e) ou europeos, e tamén para algunhas das especies exóticas máis coñecidas (xeralmente no ámbito divulgativo, por causa do seu interese científico ou económico, ou por seren moi comúns noutras áreas xeográficas). En total, achéganse nomes galegos para 534 especies de moluscos. A estrutura En primeiro lugar preséntase unha clasificación taxonómica que considera as clases, ordes, superfamilias e familias de moluscos. Aquí apúntase, de maneira xeral, os nomes dos moluscos que hai en cada familia. A seguir vén o corpo do documento, onde se indica, especie por especie, alén do nome científico, os nomes galegos e ingleses de cada molusco (nalgún caso, tamén, o nome xenérico para un grupo deles). Ao final inclúese unha listaxe de referencias bibliográficas que foron utilizadas para a elaboración do presente documento. Nalgunhas desas referencias recolléronse ou propuxéronse nomes galegos para os moluscos, quer xenéricos quer específicos. Outras referencias achegan nomes para os moluscos noutras linguas, que tamén foron tidos en conta. Alén diso, inclúense algunhas fontes básicas a respecto da metodoloxía e dos criterios terminolóxicos empregados. 2 Tratamento terminolóxico De modo moi resumido, traballouse nas seguintes liñas e cos seguintes criterios: En primeiro lugar, aprofundouse no acervo lingüístico galego. A respecto dos nomes dos moluscos, a lingua galega é riquísima e dispomos dunha chea de nomes, tanto específicos (que designan un único animal) como xenéricos (que designan varios animais parecidos). -
Arxiv:2105.11503V2 [Physics.Bio-Ph] 26 May 2021 3.1 Geometry and Swimming Speeds of the Cells
The Bank Of Swimming Organisms at the Micron Scale (BOSO-Micro) Marcos F. Velho Rodrigues1, Maciej Lisicki2, Eric Lauga1,* 1 Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, United Kingdom. 2 Faculty of Physics, University of Warsaw, Warsaw, Poland. *Email: [email protected] Abstract Unicellular microscopic organisms living in aqueous environments outnumber all other creatures on Earth. A large proportion of them are able to self-propel in fluids with a vast diversity of swimming gaits and motility patterns. In this paper we present a biophysical survey of the available experimental data produced to date on the characteristics of motile behaviour in unicellular microswimmers. We assemble from the available literature empirical data on the motility of four broad categories of organisms: bacteria (and archaea), flagellated eukaryotes, spermatozoa and ciliates. Whenever possible, we gather the following biological, morphological, kinematic and dynamical parameters: species, geometry and size of the organisms, swimming speeds, actuation frequencies, actuation amplitudes, number of flagella and properties of the surrounding fluid. We then organise the data using the established fluid mechanics principles for propulsion at low Reynolds number. Specifically, we use theoretical biophysical models for the locomotion of cells within the same taxonomic groups of organisms as a means of rationalising the raw material we have assembled, while demonstrating the variability for organisms of different species within the same group. The material gathered in our work is an attempt to summarise the available experimental data in the field, providing a convenient and practical reference point for future studies. Contents 1 Introduction 2 2 Methods 4 2.1 Propulsion at low Reynolds number . -
Genome Characteristics of a Generalist Marine Bacterial Lineage
The ISME Journal (2010), 1–15 & 2010 International Society for Microbial Ecology All rights reserved 1751-7362/10 $32.00 www.nature.com/ismej ORIGINAL ARTICLE Genome characteristics of a generalist marine bacterial lineage Ryan J Newton1, Laura E Griffin1, Kathy M Bowles1, Christof Meile1, Scott Gifford1, Carrie E Givens1, Erinn C Howard1, Eric King1, Clinton A Oakley2, Chris R Reisch3, Johanna M Rinta-Kanto1, Shalabh Sharma1, Shulei Sun1, Vanessa Varaljay3, Maria Vila-Costa1,4, Jason R Westrich5 and Mary Ann Moran1 1Department of Marine Sciences, University of Georgia, Athens, GA, USA; 2Department of Plant Biology, University of Georgia, Athens, GA, USA; 3Department of Microbiology, University of Georgia, Athens, GA, USA; 4Group of Limnology-Department of Continental Ecology, Centre d’Estudis Avanc¸ats de Blanes-CSIS, Catalunya, Spain and 5Odum School of Ecology, University of Georgia, Athens, GA, USA Members of the marine Roseobacter lineage have been characterized as ecological generalists, suggesting that there will be challenges in assigning well-delineated ecological roles and biogeochemical functions to the taxon. To address this issue, genome sequences of 32 Roseobacter isolates were analyzed for patterns in genome characteristics, gene inventory, and individual gene/ pathway distribution using three predictive frameworks: phylogenetic relatedness, lifestyle strategy and environmental origin of the isolate. For the first framework, a phylogeny containing five deeply branching clades was obtained from a concatenation of 70 conserved single-copy genes. Somewhat surprisingly, phylogenetic tree topology was not the best model for organizing genome characteristics or distribution patterns of individual genes/pathways, although it provided some predictive power. The lifestyle framework, established by grouping isolates according to evidence for heterotrophy, photoheterotrophy or autotrophy, explained more of the gene repertoire in this lineage. -
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1 Mobilising molluscan models and genomes in biology 2 Angus Davison1 and Maurine Neiman2 3 1. School of Life Sciences, University Park, University of Nottingham, NG7 2RD, UK 4 2. Department of Biology, University of Iowa, Iowa City, IA, USA and Department of Gender, 5 Women's, and Sexuality Studies, University of Iowa, Iowa, City, IA, USA 6 Abstract 7 Molluscs are amongst the most ancient, diverse, and important of all animal taxa. Even so, 8 no individual mollusc species has emerged as a broadly applied model system in biology. 9 We here make the case that both perceptual and methodological barriers have played a role 10 in the relative neglect of molluscs as research organisms. We then summarize the current 11 application and potential of molluscs and their genomes to address important questions in 12 animal biology, and the state of the field when it comes to the availability of resources such 13 as genome assemblies, cell lines, and other key elements necessary to mobilising the 14 development of molluscan model systems. We conclude by contending that a cohesive 15 research community that works together to elevate multiple molluscan systems to ‘model’ 16 status will create new opportunities in addressing basic and applied biological problems, 17 including general features of animal evolution. 18 Introduction 19 Molluscs are globally important as sources of food, calcium and pearls, and as vectors of 20 human disease. From an evolutionary perspective, molluscs are notable for their remarkable 21 diversity: originating over 500 million years ago, there are over 70,000 extant mollusc 22 species [1], with molluscs present in virtually every ecosystem. -
Status Review of the Pinto Abalone - Decision
Status Review of the Pinto Abalone - Decision TABLE OF CONTENTS Page Summary Sheet ............................................................................................................. 1 of 42 CR-102 ......................................................................................................................... 3 of 42 WAC 220-330-090 Crawfish, ((abalone,)) sea urchins, sea cucumbers, goose barnacles—Areas and seasons, personal-use fishery ........................................ 6 of 42 WAC 220-320-010 Shellfish—Classification .................................................................. 7 of 42 WAC 220-610-010 Wildlife classified as endangered species ....................................... 9 of 42 Status Report for the Pinto Abalone in Washington .................................................... 10 of 42 Summary Sheet Meeting dates: May 31, 2019 Agenda item: Status Review of the Pinto Abalone (Decision) Presenter(s): Chris Eardley, Puget Sound Shellfish Policy Coordinator Henry Carson, Fish & Wildlife Research Scientist Background summary: Pinto abalone are iconic marine snails prized as food and for their beautiful shells. Initially a state recreational fishery started in 1959; the pinto abalone fishery closed in 1994 due to signs of overharvest. Populations have continued to decline since the closure, most likely due to illegal harvest and densities too low for reproduction to occur. Populations at monitoring sites declined 97% from 1992 – 2017. These ten sites originally held 359 individuals and now hold 12. The average size of the remnant individuals continues to increase and wild juveniles have not been sighted in ten years, indicating an aging population with little reproduction in the wild. The species is under active restoration by the department and its partners to prevent local extinction. Since 2009 we have placed over 15,000 hatchery-raised juvenile abalone on sites in the San Juan Islands. Federal listing under the Endangered Species Act (ESA) was evaluated in 2014 but retained the “species of concern” designation only. -
First Observation and Range Extension of the Nudibranch Tenellia Catachroma (Burn, 1963) in Western Australia (Mollusca: Gastropoda)
CSIRO Publishing The Royal Society of Victoria, 129, 37–40, 2017 www.publish.csiro.au/journals/rs 10.1071/RS17003 A VICTORIAN EMIGRANT: FIRST OBSERVATION AND RANGE EXTENSION OF THE NUDIBRANCH TENELLIA CATACHROMA (BURN, 1963) IN WESTERN AUSTRALIA (MOLLUSCA: GASTROPODA) Matt J. NiMbs National Marine Science Centre, Southern Cross University, PO Box 4321, Coffs Harbour, NSW 2450, Australia Correspondence: [email protected] ABSTRACT: The southwest coast of Western Australia is heavily influenced by the south-flowing Leeuwin Current. In summer, the current shifts and the north-flowing Capes Current delivers water from the south to nearshore environments and with it a supply of larvae from cooler waters. The nudibranch Tenellia catachroma (Burn, 1963) was considered restricted to Victorian waters; however, its discovery in eastern South Australia in 2013 revealed its capacity to expand its range west. In March 2017 a single individual was observed in shallow subtidal waters at Cape Peron, Western Australia, some 2000 km to the west of its previous range limit. Moreover, its distribution has extended northwards, possibly aided by the Capes Current, into a location of warming. This observation significantly increases the range for this Victorian emigrant to encompass most of the southern Australian coast, and also represents an equatorward shift at a time when the reverse is expected. Keywords: climate change, Cape Peron, range extension, Leeuwin Current, Capes Current The fionid nudibranch Tenellia catachroma (Burn, 1963) first found in southern NSW in 1979 (Rudman 1998), has was first described from two specimens found at Point been observed only a handful of times since and was also Danger, near Torquay, Victoria, in 1961 (Burn 1963). -
Biomedicines
biomedicines Article Antimicrobial Activities of Different Fractions from Mucus of the Garden Snail Cornu aspersum Aleksandar Dolashki 1, Lyudmila Velkova 1,*, Elmira Daskalova 2, N. Zheleva 2, Yana Topalova 2, Ventseslav Atanasov 1, Wolfgang Voelter 3 and Pavlina Dolashka 1,* 1 Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, Acad. G. Bonchev str., bl.9, 1113 Sofia, Bulgaria; [email protected] (A.D.); [email protected] (V.A.) 2 Sofia University, St. Kliment Ohridski, Faculty of Biology, Department of General and Applied Hydrobiology, 8 Dragan Tzankov Blvd., 1164 Sofia, Bulgaria; [email protected] (E.D.); [email protected]fia.bg (N.Z.); [email protected] (Y.T.) 3 Interfacultary Institute of Biochemistry, University of Tübingen, Hoppe-Seyler-Straße 4, D-72076 Tübingen, Germany; [email protected] * Correspondence: [email protected] (L.V.); [email protected] (P.D.) Received: 17 July 2020; Accepted: 24 August 2020; Published: 28 August 2020 Abstract: Natural products have long played a major role in medicine and science. The garden snail Cornu aspersum is a rich source of biologically active natural substances that might be an important source for new drugs to treat human disease. Based on our previous studies, nine fractions containing compounds with Mw <3 kDa; <10 kDa; <20 kDa; >20 kDa; >30 kDa>50 kDa and between 3 and 5 kDa; 5 and 10 kDa; and 10 and 30 kDa were purified from the mucus of C. aspersum and analyzed by tandem mass spectrometry (MALDI-TOF/TOF). Seventeen novel peptides with potential antibacterial activity were identified by de novo MS/MS sequencing using tandem mass spectrometry. -
Abstract Volume
ABSTRACT VOLUME August 11-16, 2019 1 2 Table of Contents Pages Acknowledgements……………………………………………………………………………………………...1 Abstracts Symposia and Contributed talks……………………….……………………………………………3-225 Poster Presentations…………………………………………………………………………………226-291 3 Venom Evolution of West African Cone Snails (Gastropoda: Conidae) Samuel Abalde*1, Manuel J. Tenorio2, Carlos M. L. Afonso3, and Rafael Zardoya1 1Museo Nacional de Ciencias Naturales (MNCN-CSIC), Departamento de Biodiversidad y Biologia Evolutiva 2Universidad de Cadiz, Departamento CMIM y Química Inorgánica – Instituto de Biomoléculas (INBIO) 3Universidade do Algarve, Centre of Marine Sciences (CCMAR) Cone snails form one of the most diverse families of marine animals, including more than 900 species classified into almost ninety different (sub)genera. Conids are well known for being active predators on worms, fishes, and even other snails. Cones are venomous gastropods, meaning that they use a sophisticated cocktail of hundreds of toxins, named conotoxins, to subdue their prey. Although this venom has been studied for decades, most of the effort has been focused on Indo-Pacific species. Thus far, Atlantic species have received little attention despite recent radiations have led to a hotspot of diversity in West Africa, with high levels of endemic species. In fact, the Atlantic Chelyconus ermineus is thought to represent an adaptation to piscivory independent from the Indo-Pacific species and is, therefore, key to understanding the basis of this diet specialization. We studied the transcriptomes of the venom gland of three individuals of C. ermineus. The venom repertoire of this species included more than 300 conotoxin precursors, which could be ascribed to 33 known and 22 new (unassigned) protein superfamilies, respectively. Most abundant superfamilies were T, W, O1, M, O2, and Z, accounting for 57% of all detected diversity. -
Horizontal Operon Transfer, Plasmids, and the Evolution of Photosynthesis in Rhodobacteraceae
The ISME Journal (2018) 12:1994–2010 https://doi.org/10.1038/s41396-018-0150-9 ARTICLE Horizontal operon transfer, plasmids, and the evolution of photosynthesis in Rhodobacteraceae 1 2 3 4 1 Henner Brinkmann ● Markus Göker ● Michal Koblížek ● Irene Wagner-Döbler ● Jörn Petersen Received: 30 January 2018 / Revised: 23 April 2018 / Accepted: 26 April 2018 / Published online: 24 May 2018 © The Author(s) 2018. This article is published with open access Abstract The capacity for anoxygenic photosynthesis is scattered throughout the phylogeny of the Proteobacteria. Their photosynthesis genes are typically located in a so-called photosynthesis gene cluster (PGC). It is unclear (i) whether phototrophy is an ancestral trait that was frequently lost or (ii) whether it was acquired later by horizontal gene transfer. We investigated the evolution of phototrophy in 105 genome-sequenced Rhodobacteraceae and provide the first unequivocal evidence for the horizontal transfer of the PGC. The 33 concatenated core genes of the PGC formed a robust phylogenetic tree and the comparison with single-gene trees demonstrated the dominance of joint evolution. The PGC tree is, however, largely incongruent with the species tree and at least seven transfers of the PGC are required to reconcile both phylogenies. 1234567890();,: 1234567890();,: The origin of a derived branch containing the PGC of the model organism Rhodobacter capsulatus correlates with a diagnostic gene replacement of pufC by pufX. The PGC is located on plasmids in six of the analyzed genomes and its DnaA- like replication module was discovered at a conserved central position of the PGC. A scenario of plasmid-borne horizontal transfer of the PGC and its reintegration into the chromosome could explain the current distribution of phototrophy in Rhodobacteraceae. -
Shelled Molluscs
Encyclopedia of Life Support Systems (EOLSS) Archimer http://www.ifremer.fr/docelec/ ©UNESCO-EOLSS Archive Institutionnelle de l’Ifremer Shelled Molluscs Berthou P.1, Poutiers J.M.2, Goulletquer P.1, Dao J.C.1 1 : Institut Français de Recherche pour l'Exploitation de la Mer, Plouzané, France 2 : Muséum National d’Histoire Naturelle, Paris, France Abstract: Shelled molluscs are comprised of bivalves and gastropods. They are settled mainly on the continental shelf as benthic and sedentary animals due to their heavy protective shell. They can stand a wide range of environmental conditions. They are found in the whole trophic chain and are particle feeders, herbivorous, carnivorous, and predators. Exploited mollusc species are numerous. The main groups of gastropods are the whelks, conchs, abalones, tops, and turbans; and those of bivalve species are oysters, mussels, scallops, and clams. They are mainly used for food, but also for ornamental purposes, in shellcraft industries and jewelery. Consumed species are produced by fisheries and aquaculture, the latter representing 75% of the total 11.4 millions metric tons landed worldwide in 1996. Aquaculture, which mainly concerns bivalves (oysters, scallops, and mussels) relies on the simple techniques of producing juveniles, natural spat collection, and hatchery, and the fact that many species are planktivores. Keywords: bivalves, gastropods, fisheries, aquaculture, biology, fishing gears, management To cite this chapter Berthou P., Poutiers J.M., Goulletquer P., Dao J.C., SHELLED MOLLUSCS, in FISHERIES AND AQUACULTURE, from Encyclopedia of Life Support Systems (EOLSS), Developed under the Auspices of the UNESCO, Eolss Publishers, Oxford ,UK, [http://www.eolss.net] 1 1. -
Os Nomes Galegos Dos Moluscos 2020 2ª Ed
Os nomes galegos dos moluscos 2020 2ª ed. Citación recomendada / Recommended citation: A Chave (20202): Os nomes galegos dos moluscos. Xinzo de Limia (Ourense): A Chave. https://www.achave.ga /wp!content/up oads/achave_osnomesga egosdos"mo uscos"2020.pd# Fotografía: caramuxos riscados (Phorcus lineatus ). Autor: David Vilasís. $sta o%ra est& su'eita a unha licenza Creative Commons de uso a%erto( con reco)ecemento da autor*a e sen o%ra derivada nin usos comerciais. +esumo da licenza: https://creativecommons.org/ icences/%,!nc-nd/-.0/deed.g . Licenza comp eta: https://creativecommons.org/ icences/%,!nc-nd/-.0/ ega code. anguages. 1 Notas introdutorias O que cont!n este documento Neste recurso léxico fornécense denominacións para as especies de moluscos galegos (e) ou europeos, e tamén para algunhas das especies exóticas máis coñecidas (xeralmente no ámbito divulgativo, por causa do seu interese científico ou económico, ou por seren moi comúns noutras áreas xeográficas) ! primeira edición d" Os nomes galegos dos moluscos é do ano #$%& Na segunda edición (2$#$), adicionáronse algunhas especies, asignáronse con maior precisión algunhas das denominacións vernáculas galegas, corrixiuse algunha gralla, rema'uetouse o documento e incorporouse o logo da (have. )n total, achéganse nomes galegos para *$+ especies de moluscos A estrutura )n primeiro lugar preséntase unha clasificación taxonómica 'ue considera as clases, ordes, superfamilias e familias de moluscos !'uí apúntanse, de maneira xeral, os nomes dos moluscos 'ue hai en cada familia ! seguir