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(Symphurus Plagiusa) and the Offshore Tonguefish (S
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2003 The ecology of two estuarine-dependent tonguefishes, the blackcheek tonguefish (Symphurus plagiusa) and the offshore tonguefish (S. civitatium), in coastal Louisiana Theodore Scott wS itzer Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Oceanography and Atmospheric Sciences and Meteorology Commons Recommended Citation Switzer, Theodore Scott, "The ce ology of two estuarine-dependent tonguefishes, the blackcheek tonguefish (Symphurus plagiusa) and the offshore tonguefish (S. civitatium), in coastal Louisiana" (2003). LSU Doctoral Dissertations. 1305. https://digitalcommons.lsu.edu/gradschool_dissertations/1305 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. THE ECOLOGY OF TWO ESTUARINE-DEPENDENT TONGUEFISHES, THE BLACKCHEEK TONGUEFISH (SYMPHURUS PLAGIUSA) AND THE OFFSHORE TONGUEFISH (S. CIVITATIUM), IN COASTAL LOUISIANA A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College In partial fulfillment of the Requirements for the degree of Doctor of Philosophy in The Department of Oceanography and Coastal Sciences by Theodore S. Switzer B.S., Clarion University of Pennsylvania, 1995 M.Ap.Stat., Louisiana State University, 2002 August, 2003 ACKNOWLEDGEMENTS First of all I would like to thank my major professor, Don Baltz, for his guidance and support throughout the past several years, without which this dissertation would not have been possible. -
Эволюционные Усложнения Жизненных Циклов Кокцидий (Sporozoa: Coccidea)
ПАРАЗИТОЛОГИЯ, 38, 6, 2004 УДК 576.8.192.1 ЭВОЛЮЦИОННЫЕ УСЛОЖНЕНИЯ ЖИЗНЕННЫХ циклов КОКЦИДИЙ (SPOROZOA: COCCIDEA) © М. В. Крылов, Л. М. Белова Сходные стратегии сохранения вида сформировались независимо и в разное вре- мя у различных групп кокцидий. Полиэнергидные ооцисты и тканевые цисты обна- ружены у представителей отрядов Protococcidiida и Eimeriida. Гипнозоиты найдены у Karyolysus lacerate и Plasmodium vivax, трансовариальная передача паразитов осущест- вляется в жизненных циклах кокцидий родов Karyolysus и Babesia. Становление гете- роксенности у разных групп кокцидий проходило по-разному и в разное время. В од- них группах — Cystoisospora, Toxoplasma, Aggregata, Atoxoplasma, Schelackia, Lankesterel- la, Calyptospora первичными были окончательные хозяева в других же — Sarcocystis, Karyolysus, Haemogregarina, Hepalozoon, Plasmodium, Haemoproteus, Leucocytozoon, Babe- siosoma, Theileria, Babesia ими были промежуточные хозяева. Тип Sporozoa включает в себя класс Coccidea, всех представителей этого класса мы называем кокцидиями. Систематика кокцидий построена на осо- бенностях их морфологии и жизненных циклов. При анализе эволюционных изменений жизненных циклов кокцидий мы пользовались следующей системой. Тип Sporozoa Leuckart, 1879. Класс Coccidea Leuckart, 1879. Диагноз. Паразиты беспозвоночных и позвоночных; гаметогенез обычно протекает в разных клетках и по-разному у мужских и женских гамонтов; один макрогамонт формирует одну макрогамету; один микрогамонт образу- ет несколько (много) микрогамет; характерна оогамия; сизигий обычно -
Morphological and Molecular Characterization of Ceratomyxa Batam N. Sp. (Myxozoa: Ceratomyxidae) Infecting the Gallbladder of Th
Parasitology Research (2019) 118:1647–1651 https://doi.org/10.1007/s00436-019-06217-w FISH PARASITOLOGY - SHORT COMMUNICATION Morphological and molecular characterization of Ceratomyxa batam n. sp. (Myxozoa: Ceratomyxidae) infecting the gallbladder of the cultured Trachinotus ovatus (Perciformes: Carangidae) in Batam Island, Indonesia Ying Qiao1 & Yanxiang Shao1 & Theerakamol Pengsakul 2 & Chao Chen1 & Shuli Zheng3 & Weijian Wu3 & Tonny Budhi Hardjo3 Received: 5 September 2017 /Accepted: 17 January 2019 /Published online: 23 March 2019 # Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract A new coelozoic myxozoan species, Ceratomyxa batam n. sp., was identified in cultured carangid fish, Trachinotus ovatus (Perciformes: Carangidae), in waters off Batam Island of Indonesia. The bi- and trivalved spores were observed in the gallbladder of T. ovatus. Mature bivalved spores of C. batam n. sp. were transversely elongated and narrowly crescent in shape, 3.8 ± 0.36 (2.7–4.6) μm long and 19.2 ± 1.75 (16.2–22.0) μm thick. Two sub-spherical polar capsules were 2.3 ± 0.18 (2.0–2.8) μmlong and 2.6 ± 0.16 (2.3–2.9) μm wide. Prevalence was 72.2% in 72 examined T. ovatus according to evaluations dating from November 2016. The maximum likelihood phylogenetic tree based on small subunit rDNA sequence showed similarity with Ceratomyxa robertsthomsoni and Ceratomyxa thalassomae found in Australia. This is the first report of Ceratomyxa species identified in a seawater fish at Batam Island, Indonesia. Keywords Ceratomyxa Batam n. sp. Characterization . Parasite . Gallbladder . Trachinotus ovatus Introduction Cryptocaryonidae) (Dan et al. 2006), Paradeontacylix mcintosh (Trematoda: Sanguinicolidae), Benedenia diesing The Carangid fish ovate pompano (Trachinotus ovatus)isthe (Monogenea: Capsalidae), and Trichodibna ehrenberg most successfully cultured marine fish in the world. -
Assessing Myxozoan Presence and Diversity with Environmental DNA
*Manuscript Click here to view linked References Assessing myxozoan presence and diversity with environmental DNA Hanna Hartikainen1,2,3*, David Bass3,4, Andrew G. Briscoe3, Hazel Knipe3,5, Andy J. Green6, Beth 5 Okamura3 1 Eawag, Swiss Federal Institute of Aquatic Science and Technology, 8600 Dübendorf, Switzerland 2 Institute for Integrative Biology, ETH Zurich, 8092 Zurich, Switzerland 3 Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, 10 UK 4 Centre for Environment, Fisheries and Aquaculture Science (Cefas), Barrack Road, The Nothe, Weymouth, Dorset, DT4 8UB, UK 5 Cardiff School of Biosciences, Sir Martin Evans Building, Museum Place, Cardiff, CF10 3AX, UK 15 6Department of Wetland Ecology, Estación Biológica de Doñana, EBD-CSIC, Américo Vespucio s/n, 41092 Sevilla, Spain *Corresponding author: Hanna Hartikainen; Eawag, Ueberlandstrasse 133, Duebendorf, Switzerland; phone: +41 58 765 5446; [email protected] 20 Note: Supplementary data associated with this article Abstract Amplicon sequencing on a High Throughput Sequencing (HTS) platform (custom barcoding) was used to detect and characterise myxosporean communities in environmental DNA samples from 25 marine and freshwater environments and in faeces of animals that may serve as hosts or whose prey may host myxosporean infections. A diversity of myxozoans in filtered water samples and in faeces of piscivores (otters and great cormorants) was detected, demonstrating the suitability of lineage specific amplicons for characterising otherwise difficult to sample parasite communities. The importance of using the approach was highlighted by the lack of myxosporean detection using 30 commonly employed, broadly-targeted eukaryote primers. These results suggest that, despite being frequently present in eDNA samples, myxozoans have been generally overlooked in ‘eukaryote- wide’ surveys. -
Molecular Detection of Marteilia Sydneyi, Pathogen of Sydney Rock Oysters
DISEASES OF AQUATIC ORGANISMS Vol. 40: 137-146.2000 Published March 14 Dis Aquat Org ~ Molecular detection of Marteilia sydneyi, pathogen of Sydney rock oysters Sarah N. ~leeman'l*,Robert D. ~dlard~ '~epartmentof Parasitology, University of Queensland, Brisbane, Queensland 4072, Australia '~rotozoaSection, Queensland Museum, PO Box 3300, South Brisbane, Queensland 4101, Australia ABSTRACT: The life cycle of Marteilia sydneyi, the aetiological agent of QX disease in the Sydney rock oyster Saccostrea commercialis, is not known. We have developed and optirnised 2 diagnostic assays, the polymerase chain reaction (PCR) and in situ hybridisation, for use in investigating the role of pos- sible alternative hosts in the life cycle of this pathogen. PCR primers, designed within the ITS1 rDNA of M. sydneyi, amplified a 195 bp fragment. Sensitivity of the PCR assay was assessed using DNA extracted from known numbers of sporonts purified from infected oyster digestive gland. DNA equiva- lent to 0.01 sporonts was detectable following agarose gel electrophoresis. The potential inhibitory effect of the presence of host DNA on the PCR assay was tested by the addition of oyster genornic DNA during amplification. Concentrations of host DNA in excess of 50 ng per 20 p1 reaction reduced the sensitivity of the test. Environmental validation of the PCR assay was demonstrated by the amplifica- tion of M. sydneyl DNA from 50 ng of genomic DNA extracted from QX-infected oysters. A DNA probe was constructed using the M. sydneyi unique primers and was able to detect 10 pg of M. sydneyi PCR amplified DNA in dot-blot hybridisations. The probe hybridised with presporulating and sporulating M. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Extinction Risk and Overfishing: Reconciling Conservation And
Extinction Risk and Overfishing: Reconciling Conservation and Fisheries SUBJECT AREAS: BIODIVERSITY Perspectives on the Status of Marine SUSTAINABILITY ECOLOGY Fishes BIOLOGICAL MODELS Trevor D. Davies1 & Julia K. Baum2 Received 1 2 30 April 2012 Department of Biology, Dalhousie University, Halifax, NS, Canada, Department of Biology, University of Victoria, Victoria, BC, Canada. Accepted 10 July 2012 Anthropogenic disturbances are ubiquitous in the ocean, but their impacts on marine species are hotly Published debated. We evaluated marine fish statuses using conservation (Red List threatened or not) and fisheries 7 August 2012 (above or below reference points) metrics, compared their alignment, and diagnosed why discrepancies arise. Whereas only 13.5% of Red Listed marine fishes (n52952) are threatened, 40% and 21% of populations with stock assessments (n5166) currently are below their more conservative and riskier reference points, respectively. Conservation and fisheries metrics aligned well (70.5% to 80.7%), despite Correspondence and their mathematical disconnect. Red Listings were not biased towards exaggerating threat status, and requests for materials egregious errors, where populations were categorized at opposite extremes of fisheries and conservation should be addressed to metrics, were rare. Our analyses suggest conservation and fisheries scientists will agree on the statuses of T.D.D. (tdavies@ exploited marine fishes in most cases, leaving only the question of appropriate management responses for mathstat.dal.ca) populations of mutual concern still unresolved. uman impacts on natural ecosystems are diverse and accelerating1,2. On land, where the primary threat to wildlife is habitat loss, recent comprehensive assessments of birds, mammals, and amphibians have revealed 13%, 21%, and 30% of these species to be threatened with a heightened risk of extinction, H 3 respectively . -
For Summer Flounder Is Defined As
FISHERY MANAGEMENT PLAN FOR THE SUMMER FLOUNDER FISHERY October 1987 Mid-Atlantic Fishery Management Council in cooperation with the National Marine Fisheries Service, the New England Fishery Management Council, and the South Atlantic Fishery Management Council Draft adopted by MAFMC: 29 October 1987 Final adopted by MAFMC: 16 April1988 Final approved by NOAA: 19 September 1988 3.14.89 FISHERY MANAGEMENT PLAN FOR THE SUMMER FLOUNDER FISHERY October 1987 Mid-Atlantic Fishery Management Council in cooperation with the National Marine Fisheries Service, the New England Fishery Management Council, and the South Atlantic Fishery Management Council See page 2 for a discussion of Amendment 1 to the FMP. Draft adopted by MAFMC: 21 October 1187 final adopted by MAFMC: 16 April1988 final approved by NOAA: 19 September 1988 1 2.27 91 THIS DOCUMENT IS THE SUMMER FLOUNDER FISHERY MANAGEMENT PLAN AS ADOPTED BY THE COUNCIL AND APPROVED BY THE NATIONAL MARINE FISHERIES SERVICE. THE REGULATIONS IN APPENDIX 6 (BLUE PAPER) ARE THE REGULATIONS CONTROLLING THE FISHERY AS OF THE DATE OF THIS PRINTING (27 FEBRUARY 1991). READERS SHOULD BE AWARE THAT THE COUNCIL ADOPTED AMENDMENT 1 TO THE FMP ON 31 OCTOBER 1990 TO DEFINE OVERFISHING AS REQUIRED BY 50 CFR 602 AND TO IMPOSE A 5.5" (DIAMOND MESH) AND 6" (SQUARE MESH) MINIMUM NET MESH IN THE TRAWL FISHERY. ON 15 FEBRUARY 1991 NMFS APPROVED THE OVERFISHING DEFINITION AND DISAPPROVED THE MINIMUM NET MESH. OVERFISHING FOR SUMMER FLOUNDER IS DEFINED AS FISHING IN EXCESS OF THE FMAX LEVEL. THIS ACTION DID NOT CHANGE THE REGULATIONS DISCUSSED ABOVE. 2 27.91 2 2. -
Yellowtail Flounder (Limanda Ferruginea) Ageing Manual
NOT TO BE CITED WITHOUT PRIOR REFERENCE TO THE AUTHOR(S) Northwest Atlantic Fisheries Organization Serial No. N4947 NAFO SCR Doc. 04/5 SCIENTIFIC COUNCIL MEETING – JUNE 2004 Yellowtail Flounder (Limanda ferruginea) Ageing Manual Karen Dwyer Northwest Atlantic Fisheries Centre Abstract This is a technical manual describing the methods and interpretations used for estimating age in yellowtail flounder (Limanda ferruginea). The paper gives a general overview of ageing, and then discusses how yellowtail flounder are presently being aged at the Northwest Atlantic Fisheries Centre (NAFC) in St. John’s, Newfoundland. It also provides information on the types of validation studies that are used to ensure accuracy of ageing, and attempts to troubleshoot any difficult aspects of ageing. The thin-sectioning method used to age this species is discussed, and includes detailed information on how it is carried out. The structure of the whole otolith were discussed, along with the limitations for ageing yellowtail flounder using this structure. This manual contains a glossary and high quality photos and diagrams for use when ageing yellowtail flounder. Introduction Age of marine fish can be determined by counting periodic markings on a variety of ‘hardparts’. Scales, vertebrae, spines and otoliths have been used to determine age in fish. In the case of flatfish otoliths are unique in that they have both symmetrical and asymmetrical sagittal otolith (Hunt, 1992). Age of fish is essential in fisheries management. Hence, accurate age determinations are a vital part of the scientific process of stock assessment and are critical for estimating mortality and growth rates (Chilton and Beamish, 1982; Penttila and Dery, 1988). -
Cefas PANDA Report
Project no. SSPE-CT-2003-502329 PANDA Permanent network to strengthen expertise on infectious diseases of aquaculture species and scientific advice to EU policy Coordination Action, Scientific support to policies WP4: Report on the current best methods for rapid and accurate detection of the main disease hazards in aquaculture, requirements for improvement, their eventual standardisation and validation, and how to achieve harmonised implementation throughout Europe of the best diagnostic methods Olga Haenen*, Inger Dalsgaard, Jean-Robert Bonami, Jean-Pierre Joly, Niels Olesen, Britt Bang Jensen, Ellen Ariel, Laurence Miossec and Isabelle Arzul Work package leader & corresponding author: Dr Olga Haenen, CIDC-Lelystad, NL ([email protected]) PANDA co-ordinator: Dr Barry Hill, CEFAS, UK; www.europanda.net © PANDA, 2007 Cover image: Koi with Koi Herpes Virus Disease: enophthalmia and gill necrosis (M.Engelsma acknowl.) Contents Executive summary 5 Section 1 Introduction 7 1.1 Description of work 7 1.2 Deliverables 8 1.3 Milestones and expected results 9 1.4 Structure of the report and how to use it 9 1.5 General remarks and links with other WPs of PANDA 9 Section 2 Materials and methods 10 2.1 Task force 10 2.2 Network 10 2.3 Workshops and dissemination 10 2.4 Analysis of data 10 2.5 Why harmonization throughout Europe background and aim 11 2.6. CRL functions 11 Section 3 Results 12 3.1 Task force 12 3.2 Network 12 3.3 Workshops and dissemination 12 3.4 Analysis of data 14 Diseases/pathogens of fish 14 3.4.1 Epizootic haematopoietic necrosis -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
Occurrence of Hypomelanization in Cultured Yellowtail Flounder Limanda Ferruginea
Aquaculture Research, 2002, 33, 1191±1193 SHORT COMMUNICATION Occurrence of hypomelanization in cultured yellowtail flounder Limanda ferruginea C F Purchase*, D L Boyce & J A Brown Ocean Sciences Centre, Memorial University of Newfoundland, St John's, Newfoundland, Canada Correspondence: J A Brown, Ocean Sciences Centre, Memorial University of Newfoundland, St John's, Newfoundland, A1C 5S7, Canada. E-mail: [email protected] *Present address: Department of Zoology, University of Toronto at Mississauga, 3359 Mississauga Road, Mississauga, Ontario, L5L 1C6, Canada. Flatfish often exhibit abnormal pigmentation under investigated for its potential as a cold-water cultured conditions, e.g. Japanese flounder Para- aquaculture species. Broodstock development along lichthys olivaceus (Temminck & Schlegel) (Seikai, with culture from the egg to the juvenile stage Watanabe & Shimozaki 1987). This is usually ex- have been successful. Current interest on this pressed as a lack of pigment, pseudo-albinism (hypo- species is being devoted to ongrowing of juveniles melanization), on the ocular side or, less often, as (e.g. Purchase, Boyce & Brown 2000). Here, we pigmentation on the blind side (hypermelanization), report the occurrence of hypomelanization in which is normally unpigmented (reviewed by juveniles of this species, which were produced at Venizelos & Benetti 1999). Abnormal pigmentation Memorial University of Newfoundland's Ocean Sci- may be a result of inadequate nutrition, light or ences Centre, near St John's, Newfoundland, Canada. stress during the larval stage (Matsumoto & Seikai Over a period of several years, yellowtail flounder 1992). Whether abnormal pigmentation is the result eggs were obtained from captive broodstock held at of more general metabolic problems is unclear.