DEPARTMENT of RENEWABLE RESOURCES UNIVERSITY of ALBERTA RENR 327 the Mosses of Alberta: Conservation and Identification 2018 Syllabus
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About the Book the Format Acknowledgments
About the Book For more than ten years I have been working on a book on bryophyte ecology and was joined by Heinjo During, who has been very helpful in critiquing multiple versions of the chapters. But as the book progressed, the field of bryophyte ecology progressed faster. No chapter ever seemed to stay finished, hence the decision to publish online. Furthermore, rather than being a textbook, it is evolving into an encyclopedia that would be at least three volumes. Having reached the age when I could retire whenever I wanted to, I no longer needed be so concerned with the publish or perish paradigm. In keeping with the sharing nature of bryologists, and the need to educate the non-bryologists about the nature and role of bryophytes in the ecosystem, it seemed my personal goals could best be accomplished by publishing online. This has several advantages for me. I can choose the format I want, I can include lots of color images, and I can post chapters or parts of chapters as I complete them and update later if I find it important. Throughout the book I have posed questions. I have even attempt to offer hypotheses for many of these. It is my hope that these questions and hypotheses will inspire students of all ages to attempt to answer these. Some are simple and could even be done by elementary school children. Others are suitable for undergraduate projects. And some will take lifelong work or a large team of researchers around the world. Have fun with them! The Format The decision to publish Bryophyte Ecology as an ebook occurred after I had a publisher, and I am sure I have not thought of all the complexities of publishing as I complete things, rather than in the order of the planned organization. -
Mosses, Liverworts, Hornworts)
Bryophyte Phylogeny Poster Systematics and Characteristics of Nonvascular Land Plants (Mosses, Liverworts, Hornworts) Bryophyte Phylogeny Poster Anacrogynous. Lvs in three rows (2 lateral, succubous, 1 dorsal lobule). Oil bodies scattered. Mucilage on ventral surface Central strand parenchymatous, with glomerophycotean fungus Di- or monoicous. Single S per gynoecium. Gemmae in axils of dorsal lobules Treubiales Treubiaceae Subterranean axis. Lvs mostly isophyllous. Rhizoids – Tracheophyte shoot calyptra + Central strand +, cells thin-walled, perforated Phylogeny Di- or monoicous. Gametangia lateral, bracts –. Seta +, massive Blepharoplast: lamellar strip and spline < 90 microtubules, aperture on left side. Several S/gynoecium Poster CAP 4-valved; walls unistratose. Elaterophore basal. Elaters filamentous. Asex. repro. – Haplomitriales Haplomitriaceae Thalli winged ("leafy"), 2 ventral scale rows. Air chambers –, gametangiophores – Ventral "auricles" with Nostoc. Dioicous. AN dorsal, solitary. AR dorsal, behind apex Angiosperm Blepharoplast: marchantialean. CAP 4(-6)-valved Elaters 2-helical. Elaterophore basal, rudimentary Phylogeny Gemmae receptacles flasked-shaped (unique in liverworts) Blasiales Blasiaceae Poster Air chambers +, chlorophyllose filaments – Rhizoids smooth Ventral scales +, appendages – MARCHANTIIDAE Archegoniophores branched Gemmae Neohodgsoniales Neohodgsoniaceae Liverworts Thalli rosettes or stems; axes: winged or lobes leaf-like Air chambers –, mucilage cells –, pores – AR and S in pear-shaped involucres (dorsal -
Field Guide to the Moss Genera in New Jersey by Keith Bowman
Field Guide to the Moss Genera in New Jersey With Coefficient of Conservation and Indicator Status Keith Bowman, PhD 10/20/2017 Acknowledgements There are many individuals that have been essential to this project. Dr. Eric Karlin compiled the initial annotated list of New Jersey moss taxa. Second, I would like to recognize the contributions of the many northeastern bryologists that aided in the development of the initial coefficient of conservation values included in this guide including Dr. Richard Andrus, Dr. Barbara Andreas, Dr. Terry O’Brien, Dr. Scott Schuette, and Dr. Sean Robinson. I would also like to acknowledge the valuable photographic contributions from Kathleen S. Walz, Dr. Robert Klips, and Dr. Michael Lüth. Funding for this project was provided by the United States Environmental Protection Agency, Region 2, State Wetlands Protection Development Grant, Section 104(B)(3); CFDA No. 66.461, CD97225809. Recommended Citation: Bowman, Keith. 2017. Field Guide to the Moss Genera in New Jersey With Coefficient of Conservation and Indicator Status. New Jersey Department of Environmental Protection, New Jersey Forest Service, Office of Natural Lands Management, Trenton, NJ, 08625. Submitted to United States Environmental Protection Agency, Region 2, State Wetlands Protection Development Grant, Section 104(B)(3); CFDA No. 66.461, CD97225809. i Table of Contents Introduction .................................................................................................................................................. 1 Descriptions -
An All-Taxa Biodiversity Inventory of the Huron Mountain Club
AN ALL-TAXA BIODIVERSITY INVENTORY OF THE HURON MOUNTAIN CLUB Version: August 2016 Cite as: Woods, K.D. (Compiler). 2016. An all-taxa biodiversity inventory of the Huron Mountain Club. Version August 2016. Occasional papers of the Huron Mountain Wildlife Foundation, No. 5. [http://www.hmwf.org/species_list.php] Introduction and general compilation by: Kerry D. Woods Natural Sciences Bennington College Bennington VT 05201 Kingdom Fungi compiled by: Dana L. Richter School of Forest Resources and Environmental Science Michigan Technological University Houghton, MI 49931 DEDICATION This project is dedicated to Dr. William R. Manierre, who is responsible, directly and indirectly, for documenting a large proportion of the taxa listed here. Table of Contents INTRODUCTION 5 SOURCES 7 DOMAIN BACTERIA 11 KINGDOM MONERA 11 DOMAIN EUCARYA 13 KINGDOM EUGLENOZOA 13 KINGDOM RHODOPHYTA 13 KINGDOM DINOFLAGELLATA 14 KINGDOM XANTHOPHYTA 15 KINGDOM CHRYSOPHYTA 15 KINGDOM CHROMISTA 16 KINGDOM VIRIDAEPLANTAE 17 Phylum CHLOROPHYTA 18 Phylum BRYOPHYTA 20 Phylum MARCHANTIOPHYTA 27 Phylum ANTHOCEROTOPHYTA 29 Phylum LYCOPODIOPHYTA 30 Phylum EQUISETOPHYTA 31 Phylum POLYPODIOPHYTA 31 Phylum PINOPHYTA 32 Phylum MAGNOLIOPHYTA 32 Class Magnoliopsida 32 Class Liliopsida 44 KINGDOM FUNGI 50 Phylum DEUTEROMYCOTA 50 Phylum CHYTRIDIOMYCOTA 51 Phylum ZYGOMYCOTA 52 Phylum ASCOMYCOTA 52 Phylum BASIDIOMYCOTA 53 LICHENS 68 KINGDOM ANIMALIA 75 Phylum ANNELIDA 76 Phylum MOLLUSCA 77 Phylum ARTHROPODA 79 Class Insecta 80 Order Ephemeroptera 81 Order Odonata 83 Order Orthoptera 85 Order Coleoptera 88 Order Hymenoptera 96 Class Arachnida 110 Phylum CHORDATA 111 Class Actinopterygii 112 Class Amphibia 114 Class Reptilia 115 Class Aves 115 Class Mammalia 121 INTRODUCTION No complete species inventory exists for any area. -
Arctic Biodiversity Assessment
310 Arctic Biodiversity Assessment Purple saxifrage Saxifraga oppositifolia is a very common plant in poorly vegetated areas all over the high Arctic. It even grows on Kaffeklubben Island in N Greenland, at 83°40’ N, the most northerly plant locality in the world. It is one of the first plants to flower in spring and serves as the territorial flower of Nunavut in Canada. Zackenberg 2003. Photo: Erik Thomsen. 311 Chapter 9 Plants Lead Authors Fred J.A. Daniëls, Lynn J. Gillespie and Michel Poulin Contributing Authors Olga M. Afonina, Inger Greve Alsos, Mora Aronsson, Helga Bültmann, Stefanie Ickert-Bond, Nadya A. Konstantinova, Connie Lovejoy, Henry Väre and Kristine Bakke Westergaard Contents Summary ..............................................................312 9.4. Algae ..............................................................339 9.1. Introduction ......................................................313 9.4.1. Major algal groups ..........................................341 9.4.2. Arctic algal taxonomic diversity and regionality ..............342 9.2. Vascular plants ....................................................314 9.4.2.1. Russia ...............................................343 9.2.1. Taxonomic categories and species groups ....................314 9.4.2.2. Svalbard ............................................344 9.2.2. The Arctic territory and its subdivision .......................315 9.4.2.3. Greenland ...........................................344 9.2.3. The flora of the Arctic ........................................316 -
Literature Cited Robert W. Kiger, Editor This Is a Consolidated List Of
RWKiger 28 Feb 17 Literature Cited Robert W. Kiger, Editor This is a consolidated list of all works cited in volume 28, whether as selected references, in text, or in nomenclatural contexts. In citations of articles, both here and in the taxonomic treatments, and also in nomenclatural citations, the titles of serials are rendered in the forms recommended in G. D. R. Bridson and E. R. Smith (1991). When those forms are abbreviated, as most are, cross references to the corresponding full serial titles are interpolated here alphabetically by abbreviated form. In nomenclatural citations (only), book titles are rendered in the abbreviated forms recommended in F. A. Stafleu and R. S. Cowan (1976–1988) and Stafleu et al. (1992–2009). Here, those abbreviated forms are indicated parenthetically following the full citations of the corresponding works, and cross references to the full citations are interpolated in the list alphabetically by abbreviated form. Two or more works published in the same year by the same author or group of coauthors are distinguished uniquely and consistently throughout all volumes of Flora of North America by lower-case letters (b, c, d, ...) suffixed to the date for the second and subsequent works in the set. The suffixes are assigned in order of editorial encounter and do not reflect chronological sequence of publication. The first work by any particular author or group from any given year carries the implicit date suffix "a"; thus, the sequence of explicit suffixes begins with "b". Works missing from any suffixed sequence here are ones cited elsewhere in the Flora that are not pertinent in this volume. -
Molecular Phylogenetics of Mosses and Relatives
MOLECULAR PHYLOGENETICS OF MOSSES AND RELATIVES! by! Ying Chang! ! ! A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF ! DOCTOR OF PHILOSOPHY! in! The Faculty of Graduate Studies! (Botany)! ! ! THE UNIVERSITY OF BRITISH COLUMBIA! (Vancouver)! July 2011! © Ying Chang, 2011 ! ABSTRACT! Substantial ambiguities still remain concerning the broad backbone of moss phylogeny. I surveyed 17 slowly evolving plastid genes from representative taxa to reconstruct phylogenetic relationships among the major lineages of mosses in the overall context of land-plant phylogeny. I first designed 78 bryophyte-specific primers and demonstrated that they permit straightforward amplification and sequencing of 14 core genes across a broad range of bryophytes (three of the 17 genes required more effort). In combination, these genes can generate sturdy and well- resolved phylogenetic inferences of higher-order moss phylogeny, with little evidence of conflict among different data partitions or analyses. Liverworts are strongly supported as the sister group of the remaining land plants, and hornworts as sister to vascular plants. Within mosses, besides confirming some previously published findings based on other markers, my results substantially improve support for major branching patterns that were ambiguous before. The monogeneric classes Takakiopsida and Sphagnopsida likely represent the first and second split within moss phylogeny, respectively. However, this result is shown to be sensitive to the strategy used to estimate DNA substitution model parameter values and to different data partitioning methods. Regarding the placement of remaining nonperistomate lineages, the [[[Andreaeobryopsida, Andreaeopsida], Oedipodiopsida], peristomate mosses] arrangement receives moderate to strong support. Among peristomate mosses, relationships among Polytrichopsida, Tetraphidopsida and Bryopsida remain unclear, as do the earliest splits within sublcass Bryidae. -
Phylogenetic Significance of the Rpoa Loss in the Chloroplast Genome of Mosses
54 (2) • May 2005: 353–360 Goffinet & al. • Evolution of the rpoA region Phylogenetic significance of the rpoA loss in the chloroplast genome of mosses Bernard Goffinet1, Norman J. Wickett1, A. Jonathan Shaw2 & Cymon J. Cox2 1 Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs 06269, Connecticut, U.S.A. [email protected] (author for correspiondence); [email protected] 2 Department of Biology, Duke University, Durham 27708, North Carolina, U.S.A. [email protected]; [email protected] A recent survey of arthrodontous mosses revealed that their chloroplast genome lacks the gene encoding the alpha subunit of the RNA polymerase (i.e., rpoA), and that at least in Physcomitrella patens the gene has been transferred to the nuclear genome. Subsequently the gene was recorded from the cytoplasmic genome in Takakia and Sphagnum. Here we extend the survey to representatives of all major lineages of mosses to deter- mine when in the evolutionary history of the Bryophyta the loss took place. Amplifications using primers annealing to the flanking regions of the rpoA gene yield a product that contains the gene in Takakia, Sphagnum, Andreaea, Oedipodium, Polytrichaceae, and Buxbaumia. The gene is lacking in all arthrodontous mosses, including Diphyscium but also in both species of Tetraphis. Reconstruction of the transfer on the phylogeny of mosses suggests (a) that the rpoA gene was lost twice and (b) that the gene was lost after the divergence of Buxbaumiidae and prior to the divergence of Diphyscium from the remaining Bryopsida. KEYWORDS: Bryophyta, chloroplast genome, gene transfer, phylogeny, rpoA. maize and rice, and hence potentially in many or all INTRODUCTION grasses (Sandoval & al., 2003). -
Proceedings of the Indiana Academy of Science
Studies in Indiana Bryophytes Winona H. Welch, DePauw University The mosses used in this study are Indiana collections in herbaria in the following- institutions: Indiana University, Purdue University, DePauw University, Field Museum of Natural History, University of Illinois, University of Wisconsin, and University of Chicago, and in personal herbaria of the following: Chas. C. Deam, J. P. Naylor, Seville Flowers, Betty L. Wilson, and the author. Chas. C. Deam, William D. Gray, Earl L. Harger, Jr., and Harriet Gragg Winch have kindly pre- sented many collections to the writer. The nomenclature of Tetraphis, Bryoxiphium, and Fissidens is that of ''The Moss Flora of North America north of Mexico," A. J. Grout; of Polytrichum, "The Polytrichaceae of Western North America," T. C. Frye; of Pogonatum, Catharinea, (except C. plurilamellata which is according to "Manual of Mosses of Western Pennsylvania," O. E. Jenn- ings), Buxbaumia, and Webera, of "Mosses with Hand-Lens and Micro- scope," A. J. Grout. The distribution of each species is based largely upon Indiana speci- mens examined by the author and is shown by the list of counties in which collected. The asterisk preceding the name of a county indicates that the species has been reported from that locality according to pub- lished records but not studied by the author. The asterisk following the name of a species or a variety is an indication that, according to available literature, this is the first pub- lished record for Indiana. Tetraphidaceae Tetraphis pellucida Hedw. (Georgia pellucida Rabenh.) (Figs. 1, 2.) Stems 1-2 cm. high, always some bearing terminal gemmiferous cups; peristome teeth 4, narrowly triangular. -
Bryophyte Biology Second Edition
This page intentionally left blank Bryophyte Biology Second Edition Bryophyte Biology provides a comprehensive yet succinct overview of the hornworts, liverworts, and mosses: diverse groups of land plants that occupy a great variety of habitats throughout the world. This new edition covers essential aspects of bryophyte biology, from morphology, physiological ecology and conservation, to speciation and genomics. Revised classifications incorporate contributions from recent phylogenetic studies. Six new chapters complement fully updated chapters from the original book to provide a completely up-to-date resource. New chapters focus on the contributions of Physcomitrella to plant genomic research, population ecology of bryophytes, mechanisms of drought tolerance, a phylogenomic perspective on land plant evolution, and problems and progress of bryophyte speciation and conservation. Written by leaders in the field, this book offers an authoritative treatment of bryophyte biology, with rich citation of the current literature, suitable for advanced students and researchers. BERNARD GOFFINET is an Associate Professor in Ecology and Evolutionary Biology at the University of Connecticut and has contributed to nearly 80 publications. His current research spans from chloroplast genome evolution in liverworts and the phylogeny of mosses, to the systematics of lichen-forming fungi. A. JONATHAN SHAW is a Professor at the Biology Department at Duke University, an Associate Editor for several scientific journals, and Chairman for the Board of Directors, Highlands Biological Station. He has published over 130 scientific papers and book chapters. His research interests include the systematics and phylogenetics of mosses and liverworts and population genetics of peat mosses. Bryophyte Biology Second Edition BERNARD GOFFINET University of Connecticut, USA AND A. -
An Updated List of Mosses of Korea
Journal of Species Research 9(4):377-412, 2020 An updated list of mosses of Korea Wonhee Kim1,*, Masanobu Higuchi2 and Tomio Yamaguchi3 1National Institute of Biological Resources, 42 Hwangyeong-ro, Seo-gu, Incheon 22689 Republic of Korea 2Department of Botany, National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba 305-0005 Japan 3Program of Basci Biology, Graduate School of Integrated Science for Life, Hiroshima University, 1-3-1 Kagamiyama, Higashi-hiroshima-shi 739-8526 Japan *Correspondent: [email protected] Cardot (1904) first reported 98 Korean mosses, which were collected from Busan, Gangwon Province, Mokpo, Seoul, Wonsan and Pyongyang by Father Faurie in 1901. Thirty-four of these species were new species to the world. However, eight of these species have been not listed to the moss checklist of Korea before this study. Thus, this study complies the literature including Korean mosses, and lists all the species there. As the result, the moss list of Korea is updated as including 775 taxa (728 species, 7 subspecies, 38 varieties, 2 forma) arranged into 56 families and 250 genera. This list include species that have been newly recorded since 1980. Brachythecium is the largest genus in Korea, and Fissidens, Sphagnum, Dicranum and Entodon are relatively large. Additionally, this study cites specimens collected from Jeju Island, Samcheok, Gangwon Province, and Socheong Island, and it is possible to confirm the distribution of 338 species in Korea. Keywords: bryophytes, checklist, Korea, mosses, updated Ⓒ 2020 National Institute of Biological Resources DOI:10.12651/JSR.2020.9.4.377 INTRODUCTION Choi (1980), Park and Choi (2007) reported a “New List of Bryophytes in Korea” by presenting an overview of The first study on Korean bryophytes was published by bryophytes surveyed in Mt. -
Characterization and Phylogenetic Analysis of Chloroplast And
diversity Article Characterization and Phylogenetic Analysis of Chloroplast and Mitochondria Genomes from the Antarctic Polytrichaceae Species Polytrichum juniperinum and Polytrichum strictum Karine Elise Janner de Freitas 1, Geferson Fernando Metz 1, Ehidy Rocio Peña Cañon 1, Luiz Fernando Wurdig Roesch 2 ID , Antonio Batista Pereira 1,3 and Filipe Carvalho Victoria 1,3,* ID 1 Núcleo de Estudos da Vegetação Antártica, Universidade Federal do Pampa, São Gabriel 97307-020, Brazil; [email protected] (K.E.J.d.F.); [email protected] (G.F.M.); [email protected] (E.R.P.C.); [email protected] (A.B.P.) 2 Centro Interdisciplinar de Pesquisas em Biotecnologia, Universidade Federal do Pampa, São Gabriel 97307-020, Brazil; [email protected] 3 National Institute of Antarctic Science and Technology for Environmental Research, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-901, Brazil * Correspondence: fi[email protected]; Tel.: +55-55-32370858 Received: 12 April 2018; Accepted: 13 July 2018; Published: 14 August 2018 Abstract: In this study, the organelle genomes of Polytrichum juniperinum Hedw. and Polytrichum strictum Menzies ex Brid. (Polytrichaceae, Bryophyta) from Antarctica were sequenced and compared with the plastomes of the model moss species Physcomitrella patens Brid. The sizes of the cpDNA in P. juniperinum and P. strictum were estimated to be 55,168 and 20,183 bp, respectively; the sizes of the mtDNA were 88,021 and 58,896 bp, respectively. The genomes are very similar to each other, with the possible loss of petN in the cpDNA, which also showed some gene inversions when compared with the cpDNAs of P.