bioRxiv preprint doi: https://doi.org/10.1101/365734; this version posted July 9, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Single-cell transcriptome analysis during cardiogenesis reveals basis for organ level developmental anomalies T. Yvanka de Soysa1,2, Sanjeev S. Ranade1,2, Satoshi Okawa3, Srikanth Ravichandran3, Yu Huang1,2, Hazel T. Salunga1,2, Amelia Schricker1,2, Antonio Del Sol3, Casey A. Gifford1,2*, Deepak Srivastava1,2,4,5* Affiliations: 1Gladstone Institute of Cardiovascular Disease, San Francisco, CA 94158, USA 2Roddenberry Center for Stem Cell Biology and Medicine at Gladstone, San Francisco, CA 94158, USA 3Computational Biology Group, Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg Departments of 4Pediatrics, and 5Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94143, USA *Corresponding author:
[email protected],
[email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/365734; this version posted July 9, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Organogenesis involves integration of myriad cell types with reciprocal interactions, each progressing through successive stages of lineage specification and differentiation. Establishment of unique gene networks within each cell dictates fate determination, and mutations of transcription factors that drive such networks can result in birth defects.