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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
Fungal-Algal Interactions in Ramalina Menziesii and Its Associated Epiphytic Lichen Community
The Lichenologist 44(4): 543–560 (2012) 6 British Lichen Society, 2012 doi:10.1017/S0024282912000138 Fungal-algal interactions in Ramalina menziesii and its associated epiphytic lichen community Silke WERTH Abstract: Lichens are a fascinating example of a symbiotic mutualism. It is still uncertain which processes guide fungal-photobiont interactions, and whether they are random or of a more complex nature. Here, the fungal-algal interactions in Ramalina menziesii and co-occurring taxa are analyzed by using DNA sequences of the algal Internal Transcribed Spacer region (ITS), to investigate fungal- algal associations in juvenile R. menziesii and allied species. Algal species were identified by a com- bination of BLAST searches, median-joining network analysis, and Bayesian phylogenetics. Fungal- algal networks were analyzed for nestedness, both at the species and haplotype level (fungal species vs. algal haplotypes), and the networks were inspected for evidence of compartmentalization. Bayesian phylogenetic trees indicated that the widespread green alga Trebouxia decolorans associated with R. menziesii, as well as six other fungal species. Four additional fungal species interacted with four different species of Trebouxia. Only in one out of ten samples were algal haplotypes shared with the nearest neighbours of juvenile R. menziesii. Fungal-algal species interactions were compartmen- talized, while at the level of algal haplotypes, nestedness was found. This pattern is similar to the compartmentalization found in other intimately interacting mutualists. Key words: compartmentalization, lichen-forming fungi, nestedness, photobiont, species interactions, specificity, symbiosis Accepted for publication 7 February 2012 Introduction one-to-one species, as well as haplotype in- teractions, have been analyzed in the lichen Species interactions are a major factor struc- symbiosis. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Diet and Habitat of Mountain Woodland Caribou Inferred From
ARCTIC VOL. 65, SUPPL. 1 (2012) P. 59 – 79 Diet and Habitat of Mountain Woodland Caribou Inferred from Dung Preserved in 5000-year-old Alpine Ice in the Selwyn Mountains, Northwest Territories, Canada JENNIFER M. GALLOWAY,1 JAN ADAMCZEWSKI,2 DANNA M. SCHOCK,3 THOMAS D. ANDREWS,4 GLEN MacK AY, 4 VANDY E. BOWYER,5 THOMAS MEULENDYK,6 BRIAN J. MOORMAN6 and SUSAN J. KUTZ3 (Received 22 February 2011; accepted in revised form 2 May 2011) ABSTRACT. Alpine ice patches are unique repositories of cryogenically preserved archaeological artefacts and biological specimens. Recent melting of ice in the Selwyn Mountains, Northwest Territories, Canada, has exposed layers of dung accumulated during seasonal use of ice patches by mountain woodland caribou of the ancestral Redstone population over the past ca. 5250 years. Although attempts to isolate the DNA of known caribou parasites were unsuccessful, the dung has yielded numerous well-preserved and diverse plant remains and palynomorphs. Plant remains preserved in dung suggest that the ancestral Redstone caribou population foraged on a variety of lichens (30%), bryophytes and lycopods (26.7%), shrubs (21.6%), grasses (10.5%), sedges (7.8%), and forbs (3.4%) during summer use of alpine ice. Dung palynomorph assemblages depict a mosaic of plant communities growing in the caribou’s summer habitat, including downslope boreal components and upslope floristically diverse herbaceous communities. Pollen and spore content of dung is only broadly similar to late Holocene assemblages preserved in lake sediments and peat in the study region, and differences are likely due to the influence of local vegetation and animal forage behaviour. -
Green-Algal Photobiont Diversity (Trebouxia Spp.) in Representatives of Teloschistaceae (Lecanoromycetes, Lichen-Forming Ascomycetes)
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2014 Green-algal photobiont diversity (Trebouxia spp.) in representatives of Teloschistaceae (Lecanoromycetes, lichen-forming ascomycetes) Nyati, Shyam ; Scherrer, Sandra ; Werth, Silke ; Honegger, Rosmarie Abstract: The green algal photobionts of 12 Xanthoria, seven Xanthomendoza, two Teloschistes species and Josefpoeltia parva (all Teloschistaceae) were analyzed. Xanthoria parietina was sampled on four continents. More than 300 photobiont isolates were brought into sterile culture. The nuclear ribosomal internal transcribed spacer region (nrITS; 101 sequences) and the large subunit of the RuBiSco gene (rbcL; 54 sequences) of either whole lichen DNA or photobiont isolates were phylogenetically analyzed. ITS and rbcL phylogenies were congruent, although some subclades had low bootstrap support. Trebouxia arbori- cola, T. decolorans and closely related, unnamed Trebouxia species, all belonging to clade A, were found as photobionts of Xanthoria species. Xanthomendoza species associated with either T. decolorans (clade A), T. impressa, T. gelatinosa (clade I) or with an unnamed Trebouxia species. Trebouxia gelatinosa genotypes (clade I) were the photobionts of Teloschistes chrysophthalmus, T. hosseusianus and Josefpoel- tia parva. Only weak correlations between distribution patterns of algal genotypes and environmental conditions or geographical location were observed. DOI: https://doi.org/10.1017/S0024282913000819 Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-107425 Journal Article Published Version Originally published at: Nyati, Shyam; Scherrer, Sandra; Werth, Silke; Honegger, Rosmarie (2014). Green-algal photobiont diversity (Trebouxia spp.) in representatives of Teloschistaceae (Lecanoromycetes, lichen-forming as- comycetes). -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Winter 2009 the California Lichen Society Seeks to Promote the Appreciation, Conservation and Study of Lichens
Bulletin of the California Lichen Society Volume 16 No. 2 Winter 2009 The California Lichen Society seeks to promote the appreciation, conservation and study of lichens. The interests of the Society include the entire western part of the continent, although the focus is on California. Dues categories (in $US per year): Student and fixed income - $10, Regular - $20 ($25 for foreign members), Family - $25, Sponsor and Libraries - $35, Donor - $50, Benefactor - $100 and Life Membership - $500 (one time) payable to the California Lichen Society, PO Box 7775 #21135 , San Francisco, California 94120-7775. Members receive the Bulletin and notices of meetings, field trips, lectures and workshops. Board Members of the California Lichen Society: President: Erin Martin, shastalichens gmail.com Vice President: Michelle Caisse Secretary: Patti Patterson Treasurer: Cheryl Beyer Editor: Tom Carlberg Committees of the California Lichen Society: Data Base: Bill Hill, chairperson Conservation: Eric Peterson, chairperson Education/Outreach: Erin Martin, chairperson Poster/Mini Guides: Janet Doell, chairperson Events/field trips/workshops: Judy Robertson, chairperson The Bulletin of the California Lichen Society (ISSN 1093-9148) is edited by Tom Carlberg, tcarlberg7 yahoo.com. The Bulletin has a review committee including Larry St. Clair, Shirley Tucker, William Sanders, and Richard Moe, and is produced by Eric Peterson. The Bulletin welcomes manuscripts on technical topics in lichenology relating to western North America and on conservation of the lichens, as well as news of lichenologists and their activities. The best way to submit manuscripts is by e-mail attachments or on a CD in the format of a major word processor (DOC or RTF preferred). -
'Photobiont Diversity in Teloschistaceae (Lecanoromycetes)'
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2006 Photobiont diversity in Teloschistaceae (Lecanoromycetes) Nyati, Shyam Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-163471 Dissertation Published Version Originally published at: Nyati, Shyam. Photobiont diversity in Teloschistaceae (Lecanoromycetes). 2006, University of Zurich, Faculty of Science. PHOTOBIONT DIVERSITY IN TELOSCHISTACEAE (LECANOROMYCETES) Dissertation zur Erlangung der naturwissenschaftlichen Doktorwürde (Dr. sc. nat) vorgelegt der Mathematisch-naturwissenschaftlichen Fakultät der Universität Zürich von Shyam Nyati aus Indien Promotionskomitee Prof. Dr. Ueli Grossniklaus (Vorsitz) Prof. Dr. Rosmarie Honegger (Leitung der Dissertation) Prof. Dr. Elena Conti Prof. Dr. Martin Grube Zürich, 2006 Table of Contents Table of Contents Zusammenfassung . i-v Summary . ii-vii 1 Introduction . 1-1 1.1 Lichen symbiosis . 1-1 1.1.1 Lichen-forming fungi and their photobionts. 1-1 1.1.2 Specificity and selectivity in lichen symbiosis . 1-2 1.2 Green algal lichen photobionts in focus. 1-3 1.2.1 Green algal taxonomy. 1-3 1.2.2 Trebouxiophyceae and the “lichen algae”. 1-5 1.2.3 The genus Trebouxia: most common and widespread lichen photobionts . 1-6 1.2.4 Trebouxia s.str. and Asterochloris (Tscherm.-Woess) Friedel ined. 1-7 1.3 Aims of the present investigation. .1-9 1.4 References . 1-14 2 Green algal photobiont diversity (Trebouxia spp.) in representatives of Teloschistaceae (Lecanoromycetes, lichen-forming ascomycetes) . 2-1 2.1 Summary . 2-1 2.1.1 Key words: . 2-2 2.2 Introduction . -
Ecological, Social and Commercial Role of Lichens in India With
Acdemia Arena 2010, Supplement 0201 http://www.sciencepub.net Ecological, Social and Commercial Role of Lichens in India with Special Reference to Garhwal Himalayas Balwant Kumar Young Scientist (DST) Department of Botany D. S. B. Campus Kumaun University, Nainital (India)-263001 [email protected] [Balwant Kumar. Ecological, Social and Commercial Role of Lichens in India with Special Reference to Garhwal Himalayas. Academia Arena 2010;Supplement 0201:1-118]. (ISSN 1553- 992X). http://www.sciencepub.net. 0 Acdemia Arena 2010, Supplement 0201 http://www.sciencepub.net CONTENTS Preface.............................................................................................................................3-4 Background…………………………………………………………………………………………………………………....5-12 Chapter 1: Introduction…………………………………………………………………………………………..13-19 Chapter 2: Review of Liturature…………………………………………………………………………...20-26 Chapter 3: Phytosociological Analysis Brown Oak Dominated Forest of Garhwal Himalaya, India……………………………………………………………………………….…....27-33 Chapter 4: Assessment of Lichen Species in a Temperate Region of Garhwal Himalaya, India……………………………………………..………………………………….....34- 55 Chapter 5: Macrolichens Cover and Their Distribution Pattern on Two Common Phorophytes (Quercus semecarpifolia and Rhodondron arboretum) in a Temperate Forest of Rudraprayag District Garhwal (Uttarakhand), India…………………………………………………………….…………....................................56-62 Chapter 6: Estimation of Dry Mass of Epiphytic Lichens in a Temperate Forest Of Garhwal Himalaya, -
Medicinal Lichens: the Final Frontier by Brian Kie Weissbuch, L.Ac., RH (AHG)
J A H G Volume 12 | Number 2 Journal of the American Herbalists Guild 23 MATERIA MEDICA MATERIA Medicinal Lichens: The Final Frontier by Brian Kie Weissbuch, L.Ac., RH (AHG) erbalists of myriad traditions article discusses recent scienti!c research Brian Kie Weissbuch L.Ac., AHG, is an acupuncturist have explored the healing indicating important uses for well-known lichens in private practice since properties of life-forms from at (Cetraria islandica and Usnea spp.) as well as less 1991. Brian is a botanist least !ve kingdoms: Monera familiar species (Flavoparmelia caperata and and herbalist with 44 years (bacteria)*, Protista (algae), Lobaria pulmonaria ). experience, and is co- Fungi, Plantae, and Animalia *Recall the ancient Nubians’ crafting of founder of KW Botanicals H Inc. in San Anselmo, CA, (the latter being primarily the domain of TCM medicinal beers, rich in tetracycline from the providing medicinal herb practitioners, who use gecko, snake, oyster shell, soil-borne Streptomyces bacteria found on the brewers’ formulae to primary health various insects, and other animal-derived grain (Nelson et al 2010). This medicine was given to care practitioners since 1983. substances). Nevertheless, with few exceptions, children as well as adults. He provides continuing herbalists have neglected an important life-form in education seminars to our medicines: the symbiotic intersection of algae Cetraria islandica, C. spp. The Iceland acupuncturists, and classes in herbal medicine for herbalists and fungi with a history of over 600 million years Mosses and health care practitioners. on our wayward planet —the lichens. Any discussion of edible and medicinal lichens He can be reached at brian@ How little we know of this symbiotic life- must begin with Cetraria islandica and allied kwbotanicals.com. -
Abstracts for IAL 6- ABLS Joint Meeting (2008)
Abstracts for IAL 6- ABLS Joint Meeting (2008) AÐALSTEINSSON, KOLBEINN 1, HEIÐMARSSON, STARRI 2 and VILHELMSSON, ODDUR 1 1The University of Akureyri, Borgir Nordurslod, IS-600 Akureyri, Iceland, 2Icelandic Institute of Natural History, Akureyri Division, Borgir Nordurslod, IS-600 Akureyri, Iceland Isolation and characterization of non-phototrophic bacterial symbionts of Icelandic lichens Lichens are symbiotic organisms comprise an ascomycete mycobiont, an algal or cyanobacterial photobiont, and typically a host of other bacterial symbionts that in most cases have remained uncharacterized. In the current project, which focuses on the identification and preliminary characterization of these bacterial symbionts, the species composition of the resident associate microbiota of eleven species of lichen was investigated using both 16S rDNA sequencing of isolated bacteria growing in pure culture and Denaturing Gradient Gel Electrophoresis (DGGE) of the 16S-23S internal transcribed spacer (ITS) region amplified from DNA isolated directly from lichen samples. Gram-positive bacteria appear to be the most prevalent, especially actinomycetes, although bacilli were also observed. Gamma-proteobacteria and species from the Bacteroides/Chlorobi group were also observed. Among identified genera are Rhodococcus, Micrococcus, Microbacterium, Bacillus, Chryseobacterium, Pseudomonas, Sporosarcina, Agreia, Methylobacterium and Stenotrophomonas . Further characterization of selected strains indicated that most strains ar psychrophilic or borderline psychrophilic,